Wall clock time and date at job start Tue Mar 31 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38099 * 119.75258 * 2 1 4 4 C 1.38271 * 119.88713 * 180.02562 * 3 2 1 5 5 C 1.37851 * 119.95327 * 0.13170 * 4 3 2 6 6 C 1.39574 * 120.41570 * 359.95288 * 5 4 3 7 7 C 1.38409 * 119.39440 * 359.78860 * 6 5 4 8 8 C 1.50921 * 122.03241 * 180.76587 * 7 6 5 9 9 C 1.53049 * 109.59128 * 344.31567 * 8 7 6 10 10 C 1.53380 * 107.98115 * 47.29584 * 9 8 7 11 11 N 1.39413 * 117.65886 * 179.71292 * 6 5 4 12 12 C 1.46898 * 111.00286 * 285.34763 * 11 6 5 13 13 C 1.53001 * 109.47160 * 167.23418 * 12 11 6 14 14 C 1.52992 * 109.47158 * 179.97438 * 13 12 11 15 15 S 1.80996 * 109.47167 * 179.97438 * 14 13 12 16 16 C 1.76200 * 100.00016 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00217 * 0.02562 * 16 15 14 18 18 C 1.38802 * 120.00154 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99858 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00234 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46617 * 90.00505 * 20 18 16 22 22 H 1.48495 * 109.47495 * 210.00241 * 20 18 16 23 23 H 1.48496 * 109.47146 * 330.00596 * 20 18 16 24 24 H 1.09001 * 109.47163 * 90.00474 * 1 2 3 25 25 H 1.09002 * 109.47260 * 209.99676 * 1 2 3 26 26 H 1.08997 * 109.47338 * 330.00237 * 1 2 3 27 27 H 1.07994 * 120.06032 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.02664 * 180.11807 * 4 3 2 29 29 H 1.08000 * 119.79033 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.50998 * 224.25694 * 8 7 6 31 31 H 1.08998 * 109.43964 * 104.33011 * 8 7 6 32 32 H 1.09002 * 109.76837 * 287.66008 * 9 8 7 33 33 H 1.09004 * 109.76823 * 166.93280 * 9 8 7 34 34 H 1.09009 * 109.60406 * 51.48725 * 10 9 8 35 35 H 1.09001 * 109.60414 * 171.81743 * 10 9 8 36 36 H 1.09004 * 109.47075 * 287.23282 * 12 11 6 37 37 H 1.08996 * 109.46729 * 47.23197 * 12 11 6 38 38 H 1.09004 * 109.47016 * 299.99900 * 13 12 11 39 39 H 1.09000 * 109.46856 * 59.99876 * 13 12 11 40 40 H 1.09004 * 109.47089 * 299.99871 * 14 13 12 41 41 H 1.09001 * 109.47164 * 59.99650 * 14 13 12 42 42 H 0.97008 * 120.00257 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1989 0.0000 4 6 3.5750 1.2022 -0.0005 5 6 4.2661 0.0094 -0.0038 6 6 3.5788 -1.2054 -0.0056 7 6 2.1948 -1.2030 0.0004 8 6 1.3921 -2.4809 0.0159 9 6 2.2930 -3.6575 -0.3667 10 6 3.5875 -3.5473 0.4486 11 7 4.3350 -2.3767 -0.0151 12 6 4.9182 -2.6161 -1.3419 13 6 5.9823 -3.7109 -1.2413 14 6 6.5893 -3.9607 -2.6232 15 16 7.8485 -5.2553 -2.5040 16 6 8.3654 -5.3353 -4.1866 17 1 7.9116 -4.6877 -4.9223 18 6 9.3563 -6.2298 -4.5665 19 7 9.9097 -7.0187 -3.6699 20 14 9.9038 -6.3151 -6.3505 21 1 11.0238 -5.3651 -6.5704 22 1 10.3558 -7.6944 -6.6642 23 1 8.7670 -5.9536 -7.2349 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6493 2.1324 0.0004 28 1 4.1132 2.1385 0.0014 29 1 5.3461 0.0150 -0.0046 30 1 0.5722 -2.4046 -0.6983 31 1 0.9880 -2.6434 1.0151 32 1 2.5231 -3.6147 -1.4313 33 1 1.7906 -4.5969 -0.1357 34 1 3.3456 -3.4319 1.5052 35 1 4.1868 -4.4467 0.3067 36 1 4.1354 -2.9325 -2.0312 37 1 5.3757 -1.6973 -1.7087 38 1 6.7651 -3.3944 -0.5519 39 1 5.5246 -4.6296 -0.8743 40 1 5.8062 -4.2773 -3.3122 41 1 7.0467 -3.0420 -2.9906 42 1 10.6020 -7.6442 -3.9354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610409838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:18 Heat of formation + Delta-G solvation = -9.726554 kcal Electronic energy + Delta-G solvation = -20438.898990 eV Core-core repulsion = 17508.074126 eV Total energy + Delta-G solvation = -2930.824865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67724 -38.48180 -35.60893 -34.63373 -34.37401 -31.84690 -31.15460 -28.00410 -27.60574 -27.31623 -25.32497 -24.23073 -22.48585 -21.59159 -20.16862 -19.56532 -17.65373 -17.35741 -16.90274 -16.79088 -16.35192 -16.07120 -15.46968 -15.32285 -15.00560 -14.66784 -14.49727 -14.12320 -14.04402 -13.60507 -13.47816 -13.28175 -13.15412 -13.07699 -12.90602 -12.77761 -12.50774 -12.43110 -12.37216 -12.13685 -11.97212 -11.57599 -11.47922 -11.31022 -11.14566 -10.35262 -10.15081 -9.43887 -8.80869 -8.67367 -8.38071 -6.14368 0.43540 0.46474 1.30751 1.38880 1.48040 1.72336 2.27214 2.68620 2.91459 2.96143 3.31415 3.76299 3.79289 3.89685 3.96088 4.02833 4.15569 4.20073 4.26795 4.34207 4.42247 4.44578 4.49954 4.62911 4.63982 4.71703 4.75473 4.79510 4.86007 4.91141 4.95349 4.98595 5.13755 5.14878 5.19796 5.30934 5.34842 5.39004 5.44390 5.59041 5.70863 5.91748 6.08590 6.17408 6.50202 7.04115 8.71363 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.002892 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.965558 B = 9680.933447 C = 9959.646110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.111 4.111 5 C -0.146 4.146 6 C 0.099 3.901 7 C -0.135 4.135 8 C -0.072 4.072 9 C -0.156 4.156 10 C 0.048 3.952 11 N -0.506 5.506 12 C 0.079 3.921 13 C -0.081 4.081 14 C -0.087 4.087 15 S -0.193 6.193 16 C -0.539 4.539 17 H 0.072 0.928 18 C 0.015 3.985 19 N -0.907 5.907 20 Si 0.994 3.006 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.263 1.263 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.373 14.373 8.023 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.161 4.161 4 C -0.129 4.129 5 C -0.166 4.166 6 C 0.003 3.997 7 C -0.137 4.137 8 C -0.109 4.109 9 C -0.195 4.195 10 C -0.079 4.079 11 N -0.222 5.222 12 C -0.048 4.048 13 C -0.120 4.120 14 C -0.237 4.237 15 S 0.036 5.964 16 C -0.687 4.687 17 H 0.090 0.910 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.816 3.184 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.187 1.187 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.137 0.863 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.469 13.642 9.277 25.519 hybrid contribution -0.058 0.289 -2.399 2.417 sum -19.527 13.930 6.878 24.954 Atomic orbital electron populations 1.20870 0.89438 1.03738 1.02939 1.20085 0.97317 0.92051 0.98681 1.21236 0.94227 0.98171 1.02499 1.21216 0.94804 0.97857 0.99037 1.21198 1.00158 0.91676 1.03566 1.18697 0.90677 0.90607 0.99767 1.20097 0.92710 0.96364 1.04555 1.20570 0.97210 0.90211 1.02890 1.22175 0.97261 0.99903 1.00143 1.22340 0.93476 0.92357 0.99711 1.58615 1.35078 1.02768 1.25764 1.22063 0.95980 0.98893 0.87840 1.21186 0.97739 0.98649 0.94404 1.23127 0.99715 1.00260 1.00588 1.84623 1.47016 1.48911 1.15851 1.23040 1.25887 1.26111 0.93634 0.90989 1.26071 0.95204 0.93995 1.03704 1.70154 1.25904 1.22278 1.36036 0.85016 0.78716 0.78021 0.76663 1.19290 1.19828 1.18719 0.90551 0.90743 0.90296 0.84029 0.84180 0.86326 0.89458 0.89459 0.92549 0.88867 0.89812 0.89748 0.93780 0.90745 0.91483 0.91194 0.91995 0.92039 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.21 71.23 0.66 -0.72 16 2 C -0.08 -1.49 5.88 -19.82 -0.12 -1.61 16 3 C -0.14 -2.55 9.69 22.24 0.22 -2.33 16 4 C -0.11 -2.19 10.04 22.19 0.22 -1.97 16 5 C -0.15 -3.53 9.20 22.50 0.21 -3.33 16 6 C 0.10 2.48 5.11 38.30 0.20 2.68 16 7 C -0.13 -2.90 5.75 -19.67 -0.11 -3.02 16 8 C -0.07 -1.24 4.54 29.93 0.14 -1.10 16 9 C -0.16 -3.00 6.03 30.74 0.19 -2.82 16 10 C 0.05 1.09 5.69 86.52 0.49 1.58 16 11 N -0.51 -13.29 4.49 -695.81 -3.12 -16.41 16 12 C 0.08 2.23 4.77 86.30 0.41 2.64 16 13 C -0.08 -2.69 5.17 30.59 0.16 -2.53 16 14 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 15 S -0.19 -10.38 21.44 -56.49 -1.21 -11.60 16 16 C -0.54 -31.49 9.50 67.95 0.65 -30.84 16 17 H 0.07 4.06 7.80 -2.91 -0.02 4.03 16 18 C 0.02 0.87 5.49 84.86 0.47 1.34 16 19 N -0.91 -55.20 13.22 21.65 0.29 -54.92 16 20 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.80 6.73 -2.39 -0.02 0.78 16 26 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 27 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 28 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 30 H 0.09 1.28 7.36 -2.39 -0.02 1.27 16 31 H 0.09 1.29 8.07 -2.39 -0.02 1.27 16 32 H 0.06 1.25 6.35 -2.39 -0.02 1.23 16 33 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.78 8.11 -2.38 -0.02 1.76 16 35 H 0.08 2.00 6.03 -2.39 -0.01 1.99 16 36 H 0.04 1.23 6.33 -2.38 -0.02 1.21 16 37 H 0.07 2.12 7.53 -2.39 -0.02 2.10 16 38 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.07 2.30 6.33 -2.39 -0.02 2.28 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.06 2.50 8.14 -2.40 -0.02 2.48 16 42 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -67.75 343.67 3.14 -64.61 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.99 Total: 17.23 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 4.17 Total: -45.19 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -2.84 Total: -71.33 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -10.38 SS G_CDS: -1.21 Total: -11.60 kcal Total: -67.75 3.14 -64.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.886 kcal (2) G-P(sol) polarization free energy of solvation -67.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds