Wall clock time and date at job start Tue Mar 31 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21312 * 119.99889 * 2 1 4 4 C 1.46642 * 119.99869 * 179.97438 * 2 1 3 5 5 C 1.40084 * 120.23090 * 354.58327 * 4 2 1 6 6 C 1.37814 * 119.87540 * 180.30072 * 5 4 2 7 7 F 1.35093 * 119.83332 * 179.72589 * 6 5 4 8 8 C 1.38881 * 120.34169 * 359.43871 * 6 5 4 9 9 C 1.37947 * 120.46309 * 0.56415 * 8 6 5 10 10 C 1.38929 * 120.11953 * 359.72015 * 9 8 6 11 11 N 1.38813 * 120.17135 * 179.97438 * 10 9 8 12 12 C 1.46850 * 111.00128 * 300.26259 * 11 10 9 13 13 C 1.53033 * 109.52302 * 185.83765 * 12 11 10 14 14 C 1.53122 * 109.28233 * 300.82050 * 13 12 11 15 15 C 1.53122 * 109.15672 * 57.65260 * 14 13 12 16 16 H 1.08997 * 109.53571 * 62.31152 * 15 14 13 17 17 C 1.50703 * 109.50361 * 182.40496 * 15 14 13 18 18 H 1.07995 * 119.99997 * 119.80115 * 17 15 14 19 19 C 1.37880 * 120.00091 * 299.81046 * 17 15 14 20 20 N 1.31516 * 120.00222 * 179.97438 * 19 17 15 21 21 Si 1.86802 * 119.99928 * 359.97438 * 19 17 15 22 22 H 1.48503 * 109.47053 * 90.00275 * 21 19 17 23 23 H 1.48495 * 109.47156 * 210.00727 * 21 19 17 24 24 H 1.48505 * 109.47213 * 330.00552 * 21 19 17 25 25 C 1.46846 * 110.99927 * 64.47355 * 11 10 9 26 26 H 1.09001 * 109.47046 * 270.00016 * 1 2 3 27 27 H 1.08995 * 109.47320 * 30.00130 * 1 2 3 28 28 H 1.08997 * 109.47090 * 150.00328 * 1 2 3 29 29 H 1.08001 * 120.06703 * 0.02562 * 5 4 2 30 30 H 1.07996 * 119.77013 * 180.28095 * 8 6 5 31 31 H 1.08002 * 119.93970 * 179.73712 * 9 8 6 32 32 H 1.08995 * 109.46081 * 305.85424 * 12 11 10 33 33 H 1.09003 * 109.45920 * 65.82385 * 12 11 10 34 34 H 1.08996 * 109.50705 * 180.88039 * 13 12 11 35 35 H 1.09004 * 109.53937 * 60.78018 * 13 12 11 36 36 H 1.08997 * 109.52125 * 297.75280 * 14 13 12 37 37 H 1.08998 * 109.52637 * 177.55716 * 14 13 12 38 38 H 0.96992 * 119.99919 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.46336 * 294.17261 * 25 11 10 40 40 H 1.08997 * 109.46575 * 54.15227 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5494 -2.4832 0.1154 6 6 2.2463 -3.6721 0.1213 7 9 1.5796 -4.8413 0.2377 8 6 3.6300 -3.6749 0.0024 9 6 4.3245 -2.4884 -0.1114 10 6 3.6418 -1.2784 -0.1137 11 7 4.3397 -0.0839 -0.2276 12 6 5.2949 0.0750 0.8764 13 6 5.9388 1.4611 0.8000 14 6 6.6549 1.6126 -0.5449 15 6 5.6480 1.3947 -1.6777 16 1 4.8721 2.1586 -1.6276 17 6 6.3565 1.4836 -3.0048 18 1 6.3542 0.6375 -3.6759 19 6 7.0080 2.6451 -3.3621 20 7 7.6267 2.7225 -4.5200 21 14 7.0116 4.1088 -2.2015 22 1 8.1871 4.0212 -1.2981 23 1 7.0853 5.3652 -2.9895 24 1 5.7653 4.1033 -1.3939 25 6 5.0124 0.0105 -1.5295 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 0.4730 -2.4867 0.2035 30 1 4.1664 -4.6122 0.0036 31 1 5.4009 -2.5002 -0.1992 32 1 4.7721 -0.0307 1.8269 33 1 6.0682 -0.6894 0.8003 34 1 6.6592 1.5730 1.6103 35 1 5.1681 2.2267 0.8900 36 1 7.4518 0.8726 -0.6186 37 1 7.0783 2.6141 -0.6215 38 1 8.0847 3.5397 -4.7715 39 1 5.7871 -0.7536 -1.5943 40 1 4.2845 -0.1420 -2.3264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000631358379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:55 Heat of formation + Delta-G solvation = -39.644902 kcal Electronic energy + Delta-G solvation = -23698.494941 eV Core-core repulsion = 20200.159544 eV Total energy + Delta-G solvation = -3498.335398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.02850 -40.44678 -38.46852 -37.39585 -33.94144 -32.21409 -32.06949 -30.32619 -29.42752 -28.71876 -24.97612 -24.17165 -24.05911 -21.74501 -21.08415 -20.03256 -18.84507 -17.58383 -17.04568 -16.63988 -16.25162 -15.76721 -15.25801 -14.85846 -14.83644 -14.46989 -14.37822 -14.17317 -13.95592 -13.48534 -13.06059 -12.93107 -12.64807 -12.41612 -12.24760 -12.17893 -12.07007 -11.77710 -11.63592 -11.15686 -11.05441 -10.54704 -10.12915 -9.96521 -9.73496 -9.54467 -9.25790 -9.16998 -8.95806 -8.54814 -8.49506 -7.92593 -6.05366 -4.04631 0.53437 0.98447 2.47106 3.30734 3.42875 3.48199 3.51778 3.94391 4.04893 4.21844 4.45292 4.55178 4.72688 5.08098 5.09530 5.24014 5.29568 5.34600 5.35868 5.46506 5.52885 5.60026 5.75263 5.78894 5.88323 5.93475 5.97956 6.08853 6.23895 6.26814 6.28008 6.48033 6.57562 6.60468 6.82517 6.84705 7.20735 7.29185 7.65125 7.71051 7.81017 7.85565 8.52603 8.97037 9.57553 11.07775 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004801 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.985767 B = 5830.940692 C = 6212.289396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.379 3.621 3 O -0.397 6.397 4 C -0.127 4.127 5 C -0.109 4.109 6 C 0.073 3.927 7 F -0.142 7.142 8 C -0.115 4.115 9 C -0.136 4.136 10 C 0.156 3.844 11 N -0.499 5.499 12 C 0.073 3.927 13 C -0.118 4.118 14 C -0.122 4.122 15 C 0.022 3.978 16 H 0.040 0.960 17 C -0.514 4.514 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.902 5.902 21 Si 0.886 3.114 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.261 1.261 25 C 0.086 3.914 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.263 0.737 39 H 0.031 0.969 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.892 -11.177 12.547 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.252 3.748 3 O -0.267 6.267 4 C -0.129 4.129 5 C -0.128 4.128 6 C 0.054 3.946 7 F -0.120 7.120 8 C -0.135 4.135 9 C -0.157 4.157 10 C 0.060 3.940 11 N -0.220 5.220 12 C -0.053 4.053 13 C -0.156 4.156 14 C -0.160 4.160 15 C 0.003 3.997 16 H 0.058 0.942 17 C -0.553 4.553 18 H 0.090 0.910 19 C -0.129 4.129 20 N -0.541 5.541 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.226 1.226 24 H -0.186 1.186 25 C -0.038 4.038 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.798 -10.107 12.448 19.907 hybrid contribution 0.602 -0.302 0.442 0.806 sum -11.196 -10.409 12.890 19.996 Atomic orbital electron populations 1.22252 0.94507 1.04648 1.04207 1.22054 0.90827 0.87732 0.74161 1.90698 1.71338 1.33024 1.31687 1.20482 0.93131 0.94655 1.04632 1.21332 1.00773 0.90260 1.00472 1.17485 0.90306 0.81271 1.05534 1.91495 1.80671 1.46076 1.93780 1.21206 0.92333 0.99677 1.00250 1.21779 1.01277 0.92063 1.00532 1.19205 0.92194 0.89554 0.93044 1.59412 1.28945 1.28998 1.04609 1.22015 0.92759 0.97832 0.92715 1.21642 0.99284 0.96227 0.98457 1.22028 0.99199 1.00560 0.94187 1.19157 0.94068 0.92527 0.93991 0.94157 1.20967 1.32759 1.00782 1.00748 0.91002 1.24956 0.94682 0.98329 0.94975 1.69896 1.35028 1.27832 1.21311 0.86853 0.79156 0.81847 0.80545 1.20699 1.22604 1.18582 1.22169 0.95559 0.99632 0.86446 0.89030 0.89460 0.90092 0.83783 0.84586 0.84478 0.91815 0.94947 0.92582 0.91316 0.92546 0.93382 0.92691 0.95064 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 9.64 36.01 0.35 -1.45 16 2 C 0.38 5.24 7.20 -30.91 -0.22 5.01 16 3 O -0.40 -7.26 15.79 5.53 0.09 -7.17 16 4 C -0.13 -1.70 5.88 -104.91 -0.62 -2.32 16 5 C -0.11 -1.16 9.29 -39.04 -0.36 -1.53 16 6 C 0.07 0.82 7.28 -39.50 -0.29 0.53 16 7 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 8 C -0.12 -1.28 10.00 -39.45 -0.39 -1.67 16 9 C -0.14 -1.76 8.67 -39.43 -0.34 -2.10 16 10 C 0.16 2.36 4.67 -83.54 -0.39 1.97 16 11 N -0.50 -8.89 2.57 -170.87 -0.44 -9.32 16 12 C 0.07 1.19 5.10 -3.83 -0.02 1.17 16 13 C -0.12 -2.13 6.09 -26.65 -0.16 -2.29 16 14 C -0.12 -2.65 4.74 -26.61 -0.13 -2.77 16 15 C 0.02 0.52 1.85 -91.69 -0.17 0.35 16 16 H 0.04 1.05 7.19 -51.93 -0.37 0.68 16 17 C -0.51 -14.46 9.14 -34.44 -0.31 -14.77 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 20 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 21 Si 0.89 22.40 24.36 -169.99 -4.14 18.26 16 22 H -0.28 -6.85 6.89 56.52 0.39 -6.46 16 23 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 24 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 25 C 0.09 1.77 4.39 -3.84 -0.02 1.76 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.56 6.69 -51.93 -0.35 0.21 16 29 H 0.14 1.11 6.51 -52.49 -0.34 0.77 16 30 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.14 1.70 7.11 -52.49 -0.37 1.33 16 32 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.03 0.49 7.31 -51.93 -0.38 0.11 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.11 3.37 -51.93 -0.17 0.93 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.03 0.62 7.55 -51.93 -0.39 0.23 16 40 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -32.09 320.87 -7.38 -39.47 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.36 Total: -1.41 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.18 Total: -16.11 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.33 Total: -36.33 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.09 Total: -7.17 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.09 -7.38 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000631358379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.178 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds