Wall clock time and date at job start Tue Mar 31 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21312 * 119.99889 * 2 1 4 4 C 1.46642 * 119.99869 * 179.97438 * 2 1 3 5 5 C 1.40084 * 120.23090 * 354.58327 * 4 2 1 6 6 C 1.37814 * 119.87540 * 180.30072 * 5 4 2 7 7 F 1.35093 * 119.83332 * 179.72589 * 6 5 4 8 8 C 1.38881 * 120.34169 * 359.43871 * 6 5 4 9 9 C 1.37947 * 120.46309 * 0.56415 * 8 6 5 10 10 C 1.38929 * 120.11953 * 359.72015 * 9 8 6 11 11 N 1.38813 * 120.17135 * 179.97438 * 10 9 8 12 12 C 1.46850 * 111.00128 * 300.26259 * 11 10 9 13 13 C 1.53033 * 109.52302 * 185.83765 * 12 11 10 14 14 C 1.53122 * 109.28233 * 300.82050 * 13 12 11 15 15 C 1.53122 * 109.15672 * 57.65260 * 14 13 12 16 16 H 1.08997 * 109.53571 * 62.31152 * 15 14 13 17 17 C 1.50703 * 109.50361 * 182.40496 * 15 14 13 18 18 H 1.07995 * 119.99997 * 119.80115 * 17 15 14 19 19 C 1.37880 * 120.00091 * 299.81046 * 17 15 14 20 20 N 1.31516 * 120.00222 * 179.97438 * 19 17 15 21 21 Si 1.86802 * 119.99928 * 359.97438 * 19 17 15 22 22 H 1.48503 * 109.47053 * 90.00275 * 21 19 17 23 23 H 1.48495 * 109.47156 * 210.00727 * 21 19 17 24 24 H 1.48505 * 109.47213 * 330.00552 * 21 19 17 25 25 C 1.46846 * 110.99927 * 64.47355 * 11 10 9 26 26 H 1.09001 * 109.47046 * 270.00016 * 1 2 3 27 27 H 1.08995 * 109.47320 * 30.00130 * 1 2 3 28 28 H 1.08997 * 109.47090 * 150.00328 * 1 2 3 29 29 H 1.08001 * 120.06703 * 0.02562 * 5 4 2 30 30 H 1.07996 * 119.77013 * 180.28095 * 8 6 5 31 31 H 1.08002 * 119.93970 * 179.73712 * 9 8 6 32 32 H 1.08995 * 109.46081 * 305.85424 * 12 11 10 33 33 H 1.09003 * 109.45920 * 65.82385 * 12 11 10 34 34 H 1.08996 * 109.50705 * 180.88039 * 13 12 11 35 35 H 1.09004 * 109.53937 * 60.78018 * 13 12 11 36 36 H 1.08997 * 109.52125 * 297.75280 * 14 13 12 37 37 H 1.08998 * 109.52637 * 177.55716 * 14 13 12 38 38 H 0.96992 * 119.99919 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.46336 * 294.17261 * 25 11 10 40 40 H 1.08997 * 109.46575 * 54.15227 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5494 -2.4832 0.1154 6 6 2.2463 -3.6721 0.1213 7 9 1.5796 -4.8413 0.2377 8 6 3.6300 -3.6749 0.0024 9 6 4.3245 -2.4884 -0.1114 10 6 3.6418 -1.2784 -0.1137 11 7 4.3397 -0.0839 -0.2276 12 6 5.2949 0.0750 0.8764 13 6 5.9388 1.4611 0.8000 14 6 6.6549 1.6126 -0.5449 15 6 5.6480 1.3947 -1.6777 16 1 4.8721 2.1586 -1.6276 17 6 6.3565 1.4836 -3.0048 18 1 6.3542 0.6375 -3.6759 19 6 7.0080 2.6451 -3.3621 20 7 7.6267 2.7225 -4.5200 21 14 7.0116 4.1088 -2.2015 22 1 8.1871 4.0212 -1.2981 23 1 7.0853 5.3652 -2.9895 24 1 5.7653 4.1033 -1.3939 25 6 5.0124 0.0105 -1.5295 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 0.4730 -2.4867 0.2035 30 1 4.1664 -4.6122 0.0036 31 1 5.4009 -2.5002 -0.1992 32 1 4.7721 -0.0307 1.8269 33 1 6.0682 -0.6894 0.8003 34 1 6.6592 1.5730 1.6103 35 1 5.1681 2.2267 0.8900 36 1 7.4518 0.8726 -0.6186 37 1 7.0783 2.6141 -0.6215 38 1 8.0847 3.5397 -4.7715 39 1 5.7871 -0.7536 -1.5943 40 1 4.2845 -0.1420 -2.3264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000631358379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:54 Heat of formation + Delta-G solvation = -58.819333 kcal Electronic energy + Delta-G solvation = -23699.326407 eV Core-core repulsion = 20200.159544 eV Total energy + Delta-G solvation = -3499.166863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.90560 -41.58314 -39.73589 -38.59004 -35.63741 -33.98680 -33.10226 -32.08311 -30.26363 -29.85556 -26.94326 -25.51162 -25.02645 -23.17517 -22.54108 -21.02981 -20.43566 -19.02520 -18.45258 -17.83065 -17.57806 -16.66693 -16.58022 -16.17965 -16.03541 -15.67954 -15.58101 -15.47187 -15.21554 -14.90342 -14.84901 -14.34152 -14.05187 -13.84475 -13.53713 -13.13893 -12.97664 -12.92591 -12.80720 -12.77038 -12.53456 -12.36299 -11.97126 -11.80911 -11.49592 -11.07170 -10.91591 -10.65967 -10.63451 -10.18474 -9.58742 -9.23304 -8.32760 -6.35893 -0.43979 0.03372 1.26752 1.34861 1.46329 1.49286 2.31000 2.54650 2.79485 3.03050 3.03285 3.31904 3.66512 3.88536 3.95790 4.03378 4.13967 4.21759 4.28121 4.37098 4.41864 4.55217 4.56956 4.67861 4.71653 4.74394 4.76655 4.87904 4.92668 4.96592 5.01589 5.10368 5.15814 5.20718 5.39598 5.41645 5.58476 5.68537 5.69968 6.02872 6.28363 6.46553 6.70301 6.81818 7.29945 8.83952 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004801 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.985767 B = 5830.940692 C = 6212.289396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.377 3.623 3 O -0.456 6.456 4 C -0.141 4.141 5 C -0.091 4.091 6 C 0.075 3.925 7 F -0.137 7.137 8 C -0.106 4.106 9 C -0.141 4.141 10 C 0.124 3.876 11 N -0.507 5.507 12 C 0.073 3.927 13 C -0.112 4.112 14 C -0.120 4.120 15 C 0.023 3.977 16 H 0.015 0.985 17 C -0.518 4.518 18 H 0.035 0.965 19 C 0.019 3.981 20 N -0.947 5.947 21 Si 0.947 3.053 22 H -0.261 1.261 23 H -0.298 1.298 24 H -0.257 1.257 25 C 0.102 3.898 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.180 0.820 30 H 0.161 0.839 31 H 0.138 0.862 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.035 0.965 38 H 0.266 0.734 39 H 0.032 0.968 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.420 -12.718 15.138 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.254 3.746 3 O -0.331 6.331 4 C -0.144 4.144 5 C -0.110 4.110 6 C 0.055 3.945 7 F -0.116 7.116 8 C -0.125 4.125 9 C -0.161 4.161 10 C 0.029 3.971 11 N -0.228 5.228 12 C -0.052 4.052 13 C -0.150 4.150 14 C -0.157 4.157 15 C 0.004 3.996 16 H 0.033 0.967 17 C -0.556 4.556 18 H 0.054 0.946 19 C -0.179 4.179 20 N -0.588 5.588 21 Si 0.775 3.225 22 H -0.187 1.187 23 H -0.226 1.226 24 H -0.182 1.182 25 C -0.023 4.023 26 H 0.136 0.864 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.197 0.803 30 H 0.179 0.821 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.349 -11.689 15.061 23.274 hybrid contribution 0.990 -0.002 -0.416 1.074 sum -12.359 -11.691 14.645 22.448 Atomic orbital electron populations 1.22270 0.90616 1.05808 1.06141 1.22839 0.92974 0.86988 0.71838 1.90682 1.72842 1.34739 1.34795 1.20623 0.92622 0.95705 1.05403 1.21579 1.02350 0.88837 0.98199 1.17574 0.90396 0.81523 1.04969 1.91517 1.80560 1.45858 1.93675 1.21433 0.92605 0.99935 0.98565 1.21745 1.01427 0.91954 1.01009 1.19364 0.93016 0.89141 0.95613 1.59215 1.28895 1.31397 1.03263 1.22064 0.93112 0.97025 0.93050 1.21597 0.99325 0.97016 0.97013 1.21902 0.98693 0.99736 0.95409 1.19019 0.93753 0.93983 0.92834 0.96652 1.21270 1.32564 0.99596 1.02212 0.94634 1.25751 0.94419 1.01244 0.96459 1.70030 1.36556 1.28874 1.23328 0.85856 0.79873 0.78090 0.78706 1.18717 1.22576 1.18196 1.21760 0.94998 0.97395 0.88170 0.86447 0.89856 0.87372 0.80311 0.82146 0.84374 0.89863 0.93580 0.89313 0.92710 0.92367 0.94683 0.92486 0.95021 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.91 9.64 71.24 0.69 -2.22 16 2 C 0.38 9.97 7.20 27.88 0.20 10.17 16 3 O -0.46 -16.90 15.79 -3.13 -0.05 -16.95 16 4 C -0.14 -3.53 5.88 -20.05 -0.12 -3.65 16 5 C -0.09 -1.62 9.29 22.62 0.21 -1.41 16 6 C 0.07 1.40 7.28 22.32 0.16 1.56 16 7 F -0.14 -2.53 17.26 44.97 0.78 -1.76 16 8 C -0.11 -2.04 10.00 22.35 0.22 -1.82 16 9 C -0.14 -3.41 8.67 22.37 0.19 -3.22 16 10 C 0.12 3.63 4.67 38.79 0.18 3.81 16 11 N -0.51 -18.01 2.57 -694.52 -1.78 -19.79 16 12 C 0.07 2.28 5.10 86.32 0.44 2.72 16 13 C -0.11 -3.85 6.09 30.65 0.19 -3.67 16 14 C -0.12 -5.16 4.74 30.68 0.15 -5.01 16 15 C 0.02 1.15 1.85 -11.49 -0.02 1.13 16 16 H 0.02 0.83 7.19 -2.39 -0.02 0.81 16 17 C -0.52 -30.45 9.14 25.60 0.23 -30.22 16 18 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 19 C 0.02 1.11 5.45 84.66 0.46 1.57 16 20 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 21 Si 0.95 47.23 24.36 68.60 1.67 48.90 16 22 H -0.26 -12.17 6.89 99.48 0.69 -11.49 16 23 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 24 H -0.26 -12.57 6.53 99.48 0.65 -11.92 16 25 C 0.10 4.33 4.39 86.33 0.38 4.71 16 26 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.11 1.04 6.69 -2.39 -0.02 1.02 16 29 H 0.18 1.85 6.51 -2.91 -0.02 1.83 16 30 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.14 3.24 7.11 -2.91 -0.02 3.22 16 32 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 33 H 0.05 1.31 7.31 -2.39 -0.02 1.29 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.03 1.59 3.37 -2.39 -0.01 1.58 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.03 1.30 7.55 -2.39 -0.02 1.28 16 40 H 0.05 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -73.61 320.87 5.45 -68.15 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.97 Total: 7.05 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 3.57 Total: -25.54 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.48 Total: -79.85 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.05 Total: -16.95 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.67 Total: 48.90 kcal Total: -73.61 5.45 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000631358379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.333 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds