Wall clock time and date at job start Tue Mar 31 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21332 * 120.00134 * 2 1 4 4 C 1.46482 * 119.99851 * 179.97438 * 2 1 3 5 5 C 1.40328 * 120.26701 * 0.27189 * 4 2 1 6 6 F 1.35097 * 120.08349 * 0.04489 * 5 4 2 7 7 C 1.37993 * 119.82403 * 180.29858 * 5 4 2 8 8 C 1.38551 * 120.36207 * 359.70069 * 7 5 4 9 9 C 1.38029 * 120.54100 * 0.02562 * 8 7 5 10 10 C 1.38868 * 120.16431 * 359.97438 * 9 8 7 11 11 N 1.38708 * 120.17996 * 180.02562 * 10 9 8 12 12 C 1.46842 * 111.00223 * 63.95595 * 11 10 9 13 13 C 1.53038 * 109.52595 * 174.15881 * 12 11 10 14 14 C 1.53110 * 109.27718 * 59.17838 * 13 12 11 15 15 C 1.53121 * 109.16147 * 302.34409 * 14 13 12 16 16 H 1.09000 * 109.50527 * 297.67361 * 15 14 13 17 17 C 1.50701 * 109.50288 * 177.59466 * 15 14 13 18 18 H 1.08003 * 120.00271 * 275.19798 * 17 15 14 19 19 C 1.37883 * 119.99954 * 95.47306 * 17 15 14 20 20 N 1.31514 * 119.99925 * 185.28167 * 19 17 15 21 21 Si 1.86801 * 119.99637 * 5.28427 * 19 17 15 22 22 H 1.48497 * 109.47098 * 84.78212 * 21 19 17 23 23 H 1.48504 * 109.46746 * 204.78207 * 21 19 17 24 24 H 1.48500 * 109.47294 * 324.78106 * 21 19 17 25 25 C 1.46849 * 111.00301 * 299.74263 * 11 10 9 26 26 H 1.09001 * 109.46895 * 240.00161 * 1 2 3 27 27 H 1.08990 * 109.47083 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.46980 * 120.00350 * 1 2 3 29 29 H 1.07998 * 119.81693 * 179.72211 * 7 5 4 30 30 H 1.07992 * 119.72768 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.91883 * 180.02562 * 9 8 7 32 32 H 1.09008 * 109.46176 * 54.14201 * 12 11 10 33 33 H 1.08992 * 109.46419 * 294.17347 * 12 11 10 34 34 H 1.09002 * 109.49927 * 299.23583 * 13 12 11 35 35 H 1.08999 * 109.53798 * 179.14425 * 13 12 11 36 36 H 1.09002 * 109.52159 * 182.44225 * 14 13 12 37 37 H 1.08994 * 109.52831 * 62.25437 * 14 13 12 38 38 H 0.97000 * 119.99763 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.45985 * 65.82389 * 25 11 10 40 40 H 1.08995 * 109.45969 * 305.86199 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2394 -1.2686 0.0006 5 6 1.5434 -2.4871 -0.0046 6 9 0.1925 -2.4953 -0.0111 7 6 2.2425 -3.6768 0.0022 8 6 3.6280 -3.6749 0.0079 9 6 4.3278 -2.4851 0.0074 10 6 3.6467 -1.2750 0.0006 11 7 4.3496 -0.0792 -0.0005 12 6 5.1402 0.0654 -1.2294 13 6 5.7845 1.4532 -1.2627 14 6 6.6813 1.6239 -0.0336 15 6 5.8436 1.4207 1.2319 16 1 5.0665 2.1835 1.2803 17 6 6.7308 1.5285 2.4453 18 1 7.2796 0.6652 2.7915 19 6 6.8374 2.7280 3.1169 20 7 7.6892 2.8513 4.1114 21 14 5.7721 4.1778 2.6142 22 1 4.4511 4.0774 3.2851 23 1 6.4367 5.4434 3.0165 24 1 5.5817 4.1651 1.1416 25 6 5.1977 0.0338 1.1930 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 1.7067 -4.6145 0.0027 30 1 4.1648 -4.6120 0.0128 31 1 5.4077 -2.4954 0.0115 32 1 4.4898 -0.0539 -2.0959 33 1 5.9188 -0.6969 -1.2521 34 1 5.0059 2.2161 -1.2540 35 1 6.3837 1.5553 -2.1675 36 1 7.1083 2.6268 -0.0306 37 1 7.4829 0.8859 -0.0622 38 1 7.7645 3.6953 4.5836 39 1 5.9760 -0.7285 1.1589 40 1 4.5890 -0.1086 2.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000664168126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:02 Heat of formation + Delta-G solvation = -44.051342 kcal Electronic energy + Delta-G solvation = -23924.560770 eV Core-core repulsion = 20426.034295 eV Total energy + Delta-G solvation = -3498.526475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.20893 -40.33037 -38.37875 -37.41345 -33.83396 -32.22796 -31.68616 -30.30079 -29.48462 -28.90555 -25.03749 -24.15047 -23.65760 -21.72567 -21.09303 -20.07301 -18.77115 -17.66733 -16.72823 -16.64540 -16.38329 -16.02141 -15.45906 -14.77597 -14.54557 -14.37659 -14.22826 -14.07327 -13.82163 -13.57327 -12.95245 -12.82285 -12.55305 -12.48091 -12.26138 -12.20121 -11.85485 -11.74521 -11.44183 -11.13941 -10.98885 -10.68630 -10.19156 -9.82257 -9.58554 -9.49956 -9.39477 -9.05172 -8.93039 -8.69947 -8.46871 -7.90779 -6.05728 -4.05319 0.56194 1.01381 2.55011 3.37563 3.44365 3.51788 3.52372 3.77416 4.12664 4.31233 4.48349 4.68663 4.76697 5.04686 5.20307 5.21540 5.26354 5.46024 5.47467 5.50089 5.54540 5.70527 5.79396 5.81407 5.92245 5.99606 6.10704 6.16224 6.27337 6.30995 6.37301 6.51734 6.60823 6.67459 6.85666 6.93426 7.29548 7.41459 7.56577 7.72171 7.84775 7.87739 8.53596 8.98189 9.58572 11.07143 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019258 B = 0.005313 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.589477 B = 5268.384186 C = 5701.609576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.379 3.621 3 O -0.400 6.400 4 C -0.190 4.190 5 C 0.143 3.857 6 F -0.130 7.130 7 C -0.179 4.179 8 C -0.054 4.054 9 C -0.175 4.175 10 C 0.194 3.806 11 N -0.502 5.502 12 C 0.075 3.925 13 C -0.119 4.119 14 C -0.112 4.112 15 C 0.022 3.978 16 H 0.044 0.956 17 C -0.513 4.513 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.262 1.262 25 C 0.082 3.918 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.263 0.737 39 H 0.030 0.970 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -12.585 -11.292 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.253 3.747 3 O -0.271 6.271 4 C -0.192 4.192 5 C 0.123 3.877 6 F -0.109 7.109 7 C -0.198 4.198 8 C -0.073 4.073 9 C -0.196 4.196 10 C 0.098 3.902 11 N -0.223 5.223 12 C -0.051 4.051 13 C -0.157 4.157 14 C -0.150 4.150 15 C 0.002 3.998 16 H 0.062 0.938 17 C -0.551 4.551 18 H 0.089 0.911 19 C -0.128 4.128 20 N -0.539 5.539 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.186 1.186 25 C -0.043 4.043 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.972 -11.450 -11.132 19.959 hybrid contribution -0.231 -0.106 -0.080 0.266 sum -12.203 -11.556 -11.211 20.203 Atomic orbital electron populations 1.22407 0.94246 1.04429 1.04269 1.21957 0.90891 0.87681 0.74218 1.90692 1.71341 1.32861 1.32231 1.20658 0.93942 0.94144 1.10502 1.17734 0.76614 0.93623 0.99760 1.91496 1.28716 1.97260 1.93383 1.21019 0.94990 0.96888 1.06858 1.21043 0.93033 0.98417 0.94779 1.21975 1.01421 0.92759 1.03431 1.18957 0.91204 0.89814 0.90238 1.59377 1.29740 1.28880 1.04334 1.22002 0.94582 0.98075 0.90464 1.21679 0.99281 0.95921 0.98844 1.21866 0.97735 1.00973 0.94404 1.19152 0.94553 0.92175 0.93891 0.93760 1.20924 1.26418 0.97898 1.09871 0.91111 1.25026 0.94826 0.98441 0.94481 1.69911 1.35483 1.26079 1.22384 0.86847 0.80897 0.81794 0.79994 1.20152 1.21837 1.18602 1.22376 0.93023 1.00102 0.88764 0.89225 0.90219 0.89328 0.84446 0.84782 0.84814 0.92010 0.94954 0.91490 0.92647 0.92749 0.93188 0.92678 0.95209 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.25 8.51 36.01 0.31 -1.94 16 2 C 0.38 5.92 7.21 -30.99 -0.22 5.69 16 3 O -0.40 -7.89 15.76 5.51 0.09 -7.80 16 4 C -0.19 -2.79 5.89 -104.85 -0.62 -3.41 16 5 C 0.14 1.71 7.26 -38.89 -0.28 1.43 16 6 F -0.13 -1.43 13.76 2.25 0.03 -1.39 16 7 C -0.18 -1.79 10.00 -39.56 -0.40 -2.18 16 8 C -0.05 -0.54 10.02 -39.54 -0.40 -0.94 16 9 C -0.18 -2.27 8.66 -39.42 -0.34 -2.61 16 10 C 0.19 3.05 4.67 -83.58 -0.39 2.66 16 11 N -0.50 -9.23 2.55 -170.89 -0.44 -9.66 16 12 C 0.07 1.23 5.16 -3.84 -0.02 1.21 16 13 C -0.12 -2.13 6.09 -26.65 -0.16 -2.29 16 14 C -0.11 -2.37 5.27 -26.61 -0.14 -2.51 16 15 C 0.02 0.52 1.94 -91.69 -0.18 0.34 16 16 H 0.04 1.14 5.26 -51.93 -0.27 0.87 16 17 C -0.51 -14.35 8.86 -34.44 -0.31 -14.66 16 18 H 0.07 2.13 8.06 -52.48 -0.42 1.70 16 19 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 20 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 21 Si 0.88 22.44 27.00 -169.99 -4.59 17.85 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.26 -6.51 6.80 56.52 0.38 -6.12 16 25 C 0.08 1.71 4.37 -3.83 -0.02 1.69 16 26 H 0.09 0.93 7.42 -51.93 -0.39 0.54 16 27 H 0.08 0.89 8.12 -51.93 -0.42 0.46 16 28 H 0.09 0.86 7.39 -51.93 -0.38 0.48 16 29 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.13 1.68 7.10 -52.49 -0.37 1.30 16 32 H 0.06 0.94 8.10 -51.92 -0.42 0.52 16 33 H 0.03 0.50 7.52 -51.93 -0.39 0.10 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.03 0.60 7.33 -51.93 -0.38 0.22 16 40 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -31.82 324.83 -8.06 -39.88 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.56 Total: -1.44 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -3.26 Total: -15.46 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.34 Total: -36.53 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.03 Total: -1.39 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.59 Total: 17.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.82 -8.06 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000664168126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.167 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds