Wall clock time and date at job start Tue Mar 31 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21332 * 120.00134 * 2 1 4 4 C 1.46482 * 119.99851 * 179.97438 * 2 1 3 5 5 C 1.40328 * 120.26701 * 0.27189 * 4 2 1 6 6 F 1.35097 * 120.08349 * 0.04489 * 5 4 2 7 7 C 1.37993 * 119.82403 * 180.29858 * 5 4 2 8 8 C 1.38551 * 120.36207 * 359.70069 * 7 5 4 9 9 C 1.38029 * 120.54100 * 0.02562 * 8 7 5 10 10 C 1.38868 * 120.16431 * 359.97438 * 9 8 7 11 11 N 1.38708 * 120.17996 * 180.02562 * 10 9 8 12 12 C 1.46842 * 111.00223 * 63.95595 * 11 10 9 13 13 C 1.53038 * 109.52595 * 174.15881 * 12 11 10 14 14 C 1.53110 * 109.27718 * 59.17838 * 13 12 11 15 15 C 1.53121 * 109.16147 * 302.34409 * 14 13 12 16 16 H 1.09000 * 109.50527 * 297.67361 * 15 14 13 17 17 C 1.50701 * 109.50288 * 177.59466 * 15 14 13 18 18 H 1.08003 * 120.00271 * 275.19798 * 17 15 14 19 19 C 1.37883 * 119.99954 * 95.47306 * 17 15 14 20 20 N 1.31514 * 119.99925 * 185.28167 * 19 17 15 21 21 Si 1.86801 * 119.99637 * 5.28427 * 19 17 15 22 22 H 1.48497 * 109.47098 * 84.78212 * 21 19 17 23 23 H 1.48504 * 109.46746 * 204.78207 * 21 19 17 24 24 H 1.48500 * 109.47294 * 324.78106 * 21 19 17 25 25 C 1.46849 * 111.00301 * 299.74263 * 11 10 9 26 26 H 1.09001 * 109.46895 * 240.00161 * 1 2 3 27 27 H 1.08990 * 109.47083 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.46980 * 120.00350 * 1 2 3 29 29 H 1.07998 * 119.81693 * 179.72211 * 7 5 4 30 30 H 1.07992 * 119.72768 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.91883 * 180.02562 * 9 8 7 32 32 H 1.09008 * 109.46176 * 54.14201 * 12 11 10 33 33 H 1.08992 * 109.46419 * 294.17347 * 12 11 10 34 34 H 1.09002 * 109.49927 * 299.23583 * 13 12 11 35 35 H 1.08999 * 109.53798 * 179.14425 * 13 12 11 36 36 H 1.09002 * 109.52159 * 182.44225 * 14 13 12 37 37 H 1.08994 * 109.52831 * 62.25437 * 14 13 12 38 38 H 0.97000 * 119.99763 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.45985 * 65.82389 * 25 11 10 40 40 H 1.08995 * 109.45969 * 305.86199 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2394 -1.2686 0.0006 5 6 1.5434 -2.4871 -0.0046 6 9 0.1925 -2.4953 -0.0111 7 6 2.2425 -3.6768 0.0022 8 6 3.6280 -3.6749 0.0079 9 6 4.3278 -2.4851 0.0074 10 6 3.6467 -1.2750 0.0006 11 7 4.3496 -0.0792 -0.0005 12 6 5.1402 0.0654 -1.2294 13 6 5.7845 1.4532 -1.2627 14 6 6.6813 1.6239 -0.0336 15 6 5.8436 1.4207 1.2319 16 1 5.0665 2.1835 1.2803 17 6 6.7308 1.5285 2.4453 18 1 7.2796 0.6652 2.7915 19 6 6.8374 2.7280 3.1169 20 7 7.6892 2.8513 4.1114 21 14 5.7721 4.1778 2.6142 22 1 4.4511 4.0774 3.2851 23 1 6.4367 5.4434 3.0165 24 1 5.5817 4.1651 1.1416 25 6 5.1977 0.0338 1.1930 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 1.7067 -4.6145 0.0027 30 1 4.1648 -4.6120 0.0128 31 1 5.4077 -2.4954 0.0115 32 1 4.4898 -0.0539 -2.0959 33 1 5.9188 -0.6969 -1.2521 34 1 5.0059 2.2161 -1.2540 35 1 6.3837 1.5553 -2.1675 36 1 7.1083 2.6268 -0.0306 37 1 7.4829 0.8859 -0.0622 38 1 7.7645 3.6953 4.5836 39 1 5.9760 -0.7285 1.1589 40 1 4.5890 -0.1086 2.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000664168126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:02 Heat of formation + Delta-G solvation = -62.338418 kcal Electronic energy + Delta-G solvation = -23925.353757 eV Core-core repulsion = 20426.034295 eV Total energy + Delta-G solvation = -3499.319462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.08888 -41.50853 -39.70006 -38.61477 -35.53760 -34.04020 -32.74194 -32.06725 -30.43890 -30.02928 -27.01251 -25.49786 -24.62796 -23.20564 -22.50425 -21.14018 -20.40792 -19.22921 -18.38023 -17.65620 -17.42493 -16.96726 -16.82809 -16.05192 -15.89077 -15.73397 -15.48983 -15.44328 -15.24673 -14.89145 -14.62357 -14.43476 -14.03784 -13.71774 -13.51892 -13.25240 -13.00404 -12.92377 -12.83822 -12.78828 -12.50848 -12.38303 -11.87516 -11.81974 -11.37361 -11.18469 -10.93893 -10.71037 -10.67262 -9.98630 -9.71328 -9.23811 -8.32985 -6.34609 -0.44078 0.06703 1.29903 1.32613 1.44933 1.49368 2.31812 2.54124 2.64284 3.04098 3.10210 3.28952 3.78188 3.90839 3.98770 4.07560 4.14517 4.21086 4.31099 4.33185 4.41286 4.56820 4.60505 4.60726 4.71500 4.78356 4.79972 4.90267 4.96260 5.00508 5.12669 5.15825 5.21076 5.24547 5.37671 5.53678 5.60566 5.71085 5.72896 6.01906 6.30946 6.46430 6.72093 6.73329 7.31587 8.83578 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019258 B = 0.005313 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.589477 B = 5268.384186 C = 5701.609576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.373 3.627 3 O -0.457 6.457 4 C -0.214 4.214 5 C 0.147 3.853 6 F -0.123 7.123 7 C -0.163 4.163 8 C -0.037 4.037 9 C -0.183 4.183 10 C 0.161 3.839 11 N -0.514 5.514 12 C 0.076 3.924 13 C -0.112 4.112 14 C -0.107 4.107 15 C 0.019 3.981 16 H 0.024 0.976 17 C -0.511 4.511 18 H 0.039 0.961 19 C 0.022 3.978 20 N -0.945 5.945 21 Si 0.934 3.066 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.099 3.901 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.175 0.825 30 H 0.174 0.826 31 H 0.135 0.865 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.266 0.734 39 H 0.034 0.966 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 -15.103 -13.282 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.251 3.749 3 O -0.332 6.332 4 C -0.217 4.217 5 C 0.127 3.873 6 F -0.101 7.101 7 C -0.181 4.181 8 C -0.055 4.055 9 C -0.203 4.203 10 C 0.066 3.934 11 N -0.235 5.235 12 C -0.050 4.050 13 C -0.149 4.149 14 C -0.145 4.145 15 C 0.000 4.000 16 H 0.042 0.958 17 C -0.549 4.549 18 H 0.057 0.943 19 C -0.176 4.176 20 N -0.585 5.585 21 Si 0.760 3.240 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.178 1.178 25 C -0.027 4.027 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.193 0.807 30 H 0.191 0.809 31 H 0.152 0.848 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.692 -13.999 -13.144 23.584 hybrid contribution 0.251 0.474 0.540 0.761 sum -13.440 -13.524 -12.605 22.857 Atomic orbital electron populations 1.22398 0.91296 1.05043 1.05799 1.22684 0.92671 0.87421 0.72121 1.90668 1.72663 1.34569 1.35310 1.20720 0.93856 0.94929 1.12201 1.17774 0.76929 0.93319 0.99254 1.91514 1.28159 1.97207 1.93220 1.21470 0.95042 0.97446 1.04187 1.21471 0.93244 0.98754 0.92063 1.22037 1.01618 0.92855 1.03771 1.19046 0.91628 0.89643 0.93121 1.59114 1.29298 1.31535 1.03587 1.22038 0.95158 0.97382 0.90379 1.21609 0.98496 0.96520 0.98315 1.21709 0.97928 1.00199 0.94711 1.19098 0.93769 0.93633 0.93513 0.95822 1.21201 1.26071 0.96609 1.11062 0.94317 1.25734 0.96025 1.01110 0.94694 1.70025 1.37433 1.26992 1.24018 0.85930 0.79017 0.79053 0.80014 1.20375 1.20910 1.17756 1.21918 0.93002 0.98058 0.89740 0.87855 0.90244 0.87152 0.80714 0.80867 0.84762 0.90360 0.93394 0.93229 0.89325 0.94250 0.92763 0.92505 0.94808 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.05 8.51 71.24 0.61 -3.44 16 2 C 0.37 11.58 7.21 27.84 0.20 11.78 16 3 O -0.46 -18.54 15.76 -3.19 -0.05 -18.59 16 4 C -0.21 -6.03 5.89 -20.01 -0.12 -6.15 16 5 C 0.15 3.06 7.26 22.72 0.16 3.22 16 6 F -0.12 -2.25 13.76 44.97 0.62 -1.64 16 7 C -0.16 -2.47 10.00 22.29 0.22 -2.25 16 8 C -0.04 -0.58 10.02 22.29 0.22 -0.36 16 9 C -0.18 -4.29 8.66 22.37 0.19 -4.10 16 10 C 0.16 4.91 4.67 38.81 0.18 5.09 16 11 N -0.51 -18.90 2.55 -694.58 -1.77 -20.68 16 12 C 0.08 2.41 5.16 86.33 0.45 2.85 16 13 C -0.11 -3.88 6.09 30.64 0.19 -3.69 16 14 C -0.11 -4.58 5.27 30.67 0.16 -4.42 16 15 C 0.02 0.95 1.94 -11.49 -0.02 0.92 16 16 H 0.02 1.26 5.26 -2.39 -0.01 1.25 16 17 C -0.51 -29.78 8.86 25.60 0.23 -29.56 16 18 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 19 C 0.02 1.32 5.47 84.66 0.46 1.78 16 20 N -0.94 -59.97 13.96 21.45 0.30 -59.67 16 21 Si 0.93 47.80 27.00 68.60 1.85 49.66 16 22 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.25 -12.52 6.80 99.48 0.68 -11.84 16 25 C 0.10 4.22 4.37 86.32 0.38 4.60 16 26 H 0.10 1.94 7.42 -2.39 -0.02 1.92 16 27 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 28 H 0.11 1.88 7.39 -2.39 -0.02 1.86 16 29 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.13 3.09 7.10 -2.91 -0.02 3.07 16 32 H 0.08 2.24 8.10 -2.38 -0.02 2.22 16 33 H 0.05 1.37 7.52 -2.39 -0.02 1.35 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.03 1.38 7.33 -2.39 -0.02 1.36 16 40 H 0.04 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -73.35 324.83 5.47 -67.88 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.01 Total: 6.73 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 3.51 Total: -23.70 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.48 Total: -80.34 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.62 Total: -1.64 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.85 Total: 49.66 kcal Total: -73.35 5.47 -67.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000664168126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.546 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds