Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99627 * 2 1 4 4 O 1.21592 * 120.00545 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99734 * 180.02562 * 3 2 1 6 6 N 1.40099 * 119.99980 * 359.97438 * 5 3 2 7 7 C 1.29727 * 120.00055 * 180.02562 * 6 5 3 8 8 C 1.47513 * 120.00174 * 180.02562 * 7 6 5 9 9 C 1.39711 * 120.12517 * 359.97163 * 8 7 6 10 10 C 1.37946 * 119.95292 * 180.02562 * 9 8 7 11 11 C 1.38295 * 120.21633 * 359.72843 * 10 9 8 12 12 C 1.38831 * 120.25720 * 0.54883 * 11 10 9 13 13 O 1.35903 * 119.98058 * 179.72855 * 12 11 10 14 14 C 1.42898 * 116.99959 * 359.72225 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38474 * 120.04231 * 359.45050 * 12 11 10 25 25 H 1.09000 * 109.46960 * 60.00108 * 1 2 3 26 26 H 1.08997 * 109.46875 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47319 * 300.00160 * 1 2 3 28 28 H 0.96997 * 119.99538 * 180.02562 * 2 1 3 29 29 H 0.96999 * 120.00331 * 180.02562 * 5 3 2 30 30 H 1.07999 * 120.00079 * 0.02562 * 7 6 5 31 31 H 1.08000 * 120.02882 * 0.02562 * 9 8 7 32 32 H 1.08007 * 119.89443 * 180.02562 * 10 9 8 33 33 H 1.07995 * 119.87367 * 180.29450 * 11 10 9 34 34 H 1.09002 * 109.47259 * 300.00539 * 14 13 12 35 35 H 1.09001 * 109.47074 * 60.00561 * 14 13 12 36 36 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 37 37 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 38 38 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.10429 * 180.25129 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 -0.0005 6 7 4.1871 -0.0460 -0.0005 7 6 5.4844 -0.0460 -0.0005 8 6 6.2220 -1.3235 -0.0011 9 6 5.5261 -2.5350 -0.0010 10 6 6.2195 -3.7275 -0.0010 11 6 7.6024 -3.7286 -0.0068 12 6 8.3029 -2.5299 -0.0011 13 8 9.6619 -2.5375 -0.0011 14 6 10.3035 -3.8144 -0.0011 15 6 11.8214 -3.6225 -0.0006 16 6 12.4980 -4.9690 -0.0012 17 1 11.9048 -5.8714 -0.0023 18 6 13.8745 -5.0489 -0.0014 19 7 14.4650 -6.2240 -0.0024 20 14 14.9007 -3.4880 -0.0016 21 1 15.1727 -3.0742 1.3984 22 1 16.1857 -3.7404 -0.7017 23 1 14.1593 -2.4083 -0.7016 24 6 7.6177 -1.3266 -0.0011 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.9499 -0.8401 -0.0004 29 1 3.9716 2.0073 -0.0001 30 1 6.0244 0.8893 -0.0001 31 1 4.4461 -2.5379 -0.0010 32 1 5.6806 -4.6636 -0.0014 33 1 8.1396 -4.6654 -0.0115 34 1 10.0075 -4.3697 0.8889 35 1 10.0075 -4.3698 -0.8911 36 1 12.1177 -3.0669 -0.8904 37 1 12.1171 -3.0672 0.8895 38 1 15.4333 -6.2802 -0.0022 39 1 8.1616 -0.3936 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726736985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = -6.617089 kcal Electronic energy + Delta-G solvation = -21172.712878 eV Core-core repulsion = 17695.729635 eV Total energy + Delta-G solvation = -3476.983243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32003 -39.95023 -37.90304 -36.65270 -34.89008 -33.44603 -32.92254 -31.28271 -30.29963 -29.24388 -26.84600 -25.53830 -24.01092 -22.57868 -21.47300 -21.00363 -20.24089 -18.93538 -18.26173 -17.38931 -16.71866 -15.99383 -15.85567 -15.74671 -15.56240 -15.16025 -14.97952 -14.46861 -14.13018 -13.89351 -13.56388 -13.26015 -13.22351 -12.65932 -12.63699 -12.56972 -11.79667 -11.74829 -11.64484 -11.00456 -10.91013 -10.89698 -10.67925 -10.26601 -10.10819 -9.91378 -9.85184 -9.45465 -9.40671 -8.67704 -8.55536 -8.04941 -6.18531 -4.19964 0.51671 1.44927 2.03294 2.04993 2.88241 3.11886 3.24462 3.32234 3.36598 3.62815 3.80436 4.30707 4.34207 4.72144 4.82544 4.93128 5.08499 5.15412 5.15450 5.15511 5.25250 5.38011 5.41218 5.66887 5.82933 5.83325 5.88108 6.05160 6.25578 6.30033 6.30785 6.39506 6.46738 6.67573 6.90106 7.00200 7.15978 7.55882 7.67786 7.77273 8.17686 8.32873 8.81803 9.41490 10.93858 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.044844 B = 0.002174 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.231503 B =12873.742979 C =13472.225629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.733 5.733 3 C 0.731 3.269 4 O -0.586 6.586 5 N -0.589 5.589 6 N -0.259 5.259 7 C 0.137 3.863 8 C -0.029 4.029 9 C -0.127 4.127 10 C -0.085 4.085 11 C -0.190 4.190 12 C 0.141 3.859 13 O -0.318 6.318 14 C 0.072 3.928 15 C -0.009 4.009 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.129 4.129 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.410 0.590 29 H 0.401 0.599 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.949 9.950 -0.018 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.389 5.389 3 C 0.431 3.569 4 O -0.461 6.461 5 N -0.336 5.336 6 N -0.067 5.067 7 C -0.073 4.073 8 C -0.031 4.031 9 C -0.147 4.147 10 C -0.103 4.103 11 C -0.210 4.210 12 C 0.094 3.906 13 O -0.231 6.231 14 C -0.002 4.002 15 C -0.047 4.047 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.150 4.150 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.246 0.754 29 H 0.242 0.758 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.198 10.274 -0.023 26.289 hybrid contribution 1.762 0.974 0.023 2.013 sum -22.436 11.248 0.000 25.098 Atomic orbital electron populations 1.21479 0.78084 1.02363 1.02305 1.44877 1.07642 1.07772 1.78571 1.15456 0.79707 0.84594 0.77119 1.91009 1.65662 1.30918 1.58490 1.46342 1.05064 1.05066 1.77128 1.74289 1.10280 1.07934 1.14246 1.24313 0.90200 0.97875 0.94960 1.17934 0.91499 0.90631 1.03055 1.21121 1.00030 0.91169 1.02417 1.20904 0.93415 0.98101 0.97899 1.21615 0.95368 0.98084 1.05924 1.18934 0.83971 0.93392 0.94305 1.86136 1.14800 1.34986 1.87226 1.23121 0.95297 0.81184 1.00621 1.19588 0.88266 0.98848 0.97954 1.20825 0.91954 0.91288 1.52551 0.90727 1.24939 0.97783 0.96219 0.94078 1.69889 1.10050 1.23497 1.50010 0.86757 0.79749 0.83970 0.78773 1.20051 1.21167 1.18757 1.20399 0.92056 0.97080 1.05496 0.92256 0.90324 0.92247 0.75409 0.75785 0.85809 0.85330 0.85517 0.84709 0.92370 0.92344 0.95374 0.95794 0.92404 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 10.70 59.85 0.64 1.29 16 2 N -0.73 -6.18 5.68 -72.07 -0.41 -6.59 16 3 C 0.73 8.13 8.68 -86.92 -0.75 7.38 16 4 O -0.59 -8.47 17.18 5.28 0.09 -8.38 16 5 N -0.59 -5.43 6.27 27.63 0.17 -5.25 16 6 N -0.26 -2.28 9.46 32.16 0.30 -1.97 16 7 C 0.14 1.12 10.75 -14.66 -0.16 0.97 16 8 C -0.03 -0.29 5.87 -105.07 -0.62 -0.90 16 9 C -0.13 -1.25 9.57 -39.14 -0.37 -1.63 16 10 C -0.09 -0.89 10.02 -39.67 -0.40 -1.29 16 11 C -0.19 -2.45 9.03 -39.34 -0.36 -2.81 16 12 C 0.14 2.02 6.68 -39.28 -0.26 1.76 16 13 O -0.32 -5.56 10.13 -19.44 -0.20 -5.76 16 14 C 0.07 1.36 4.68 37.16 0.17 1.53 16 15 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 16 C -0.53 -14.34 9.66 -34.44 -0.33 -14.68 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 20 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.26 -6.04 6.54 56.52 0.37 -5.68 16 24 C -0.13 -1.51 9.73 -39.00 -0.38 -1.89 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.41 2.93 7.87 -40.82 -0.32 2.61 16 29 H 0.40 3.07 8.75 -182.60 -1.60 1.48 16 30 H 0.12 0.71 8.02 -52.49 -0.42 0.29 16 31 H 0.13 1.05 7.55 -52.49 -0.40 0.66 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.14 1.74 6.28 -52.49 -0.33 1.41 16 34 H 0.06 1.05 7.67 -51.93 -0.40 0.66 16 35 H 0.06 1.06 7.64 -51.93 -0.40 0.66 16 36 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 37 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -32.61 341.54 -8.15 -40.76 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.33 Total: 0.26 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.04 Total: -8.68 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.84 Total: -39.64 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.11 Total: -14.13 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.61 -8.15 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726736985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.142 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds