Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99627 * 2 1 4 4 O 1.21592 * 120.00545 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99734 * 180.02562 * 3 2 1 6 6 N 1.40099 * 119.99980 * 359.97438 * 5 3 2 7 7 C 1.29727 * 120.00055 * 180.02562 * 6 5 3 8 8 C 1.47513 * 120.00174 * 180.02562 * 7 6 5 9 9 C 1.39711 * 120.12517 * 359.97163 * 8 7 6 10 10 C 1.37946 * 119.95292 * 180.02562 * 9 8 7 11 11 C 1.38295 * 120.21633 * 359.72843 * 10 9 8 12 12 C 1.38831 * 120.25720 * 0.54883 * 11 10 9 13 13 O 1.35903 * 119.98058 * 179.72855 * 12 11 10 14 14 C 1.42898 * 116.99959 * 359.72225 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38474 * 120.04231 * 359.45050 * 12 11 10 25 25 H 1.09000 * 109.46960 * 60.00108 * 1 2 3 26 26 H 1.08997 * 109.46875 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47319 * 300.00160 * 1 2 3 28 28 H 0.96997 * 119.99538 * 180.02562 * 2 1 3 29 29 H 0.96999 * 120.00331 * 180.02562 * 5 3 2 30 30 H 1.07999 * 120.00079 * 0.02562 * 7 6 5 31 31 H 1.08000 * 120.02882 * 0.02562 * 9 8 7 32 32 H 1.08007 * 119.89443 * 180.02562 * 10 9 8 33 33 H 1.07995 * 119.87367 * 180.29450 * 11 10 9 34 34 H 1.09002 * 109.47259 * 300.00539 * 14 13 12 35 35 H 1.09001 * 109.47074 * 60.00561 * 14 13 12 36 36 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 37 37 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 38 38 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.10429 * 180.25129 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 -0.0005 6 7 4.1871 -0.0460 -0.0005 7 6 5.4844 -0.0460 -0.0005 8 6 6.2220 -1.3235 -0.0011 9 6 5.5261 -2.5350 -0.0010 10 6 6.2195 -3.7275 -0.0010 11 6 7.6024 -3.7286 -0.0068 12 6 8.3029 -2.5299 -0.0011 13 8 9.6619 -2.5375 -0.0011 14 6 10.3035 -3.8144 -0.0011 15 6 11.8214 -3.6225 -0.0006 16 6 12.4980 -4.9690 -0.0012 17 1 11.9048 -5.8714 -0.0023 18 6 13.8745 -5.0489 -0.0014 19 7 14.4650 -6.2240 -0.0024 20 14 14.9007 -3.4880 -0.0016 21 1 15.1727 -3.0742 1.3984 22 1 16.1857 -3.7404 -0.7017 23 1 14.1593 -2.4083 -0.7016 24 6 7.6177 -1.3266 -0.0011 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.9499 -0.8401 -0.0004 29 1 3.9716 2.0073 -0.0001 30 1 6.0244 0.8893 -0.0001 31 1 4.4461 -2.5379 -0.0010 32 1 5.6806 -4.6636 -0.0014 33 1 8.1396 -4.6654 -0.0115 34 1 10.0075 -4.3697 0.8889 35 1 10.0075 -4.3698 -0.8911 36 1 12.1177 -3.0669 -0.8904 37 1 12.1171 -3.0672 0.8895 38 1 15.4333 -6.2802 -0.0022 39 1 8.1616 -0.3936 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726736985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = -29.300227 kcal Electronic energy + Delta-G solvation = -21173.696493 eV Core-core repulsion = 17695.729635 eV Total energy + Delta-G solvation = -3477.966857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14280 -40.96158 -38.89498 -37.52075 -35.62190 -35.39133 -33.73981 -32.90775 -31.37756 -30.23304 -27.44385 -27.15190 -25.02942 -23.48394 -22.82873 -21.92083 -21.36349 -19.67996 -19.41128 -18.71405 -18.00657 -16.94533 -16.88823 -16.75584 -16.69786 -16.28137 -16.06788 -15.64196 -15.18285 -14.81419 -14.64130 -14.37137 -14.30186 -14.20370 -13.71428 -13.25591 -13.07884 -13.03117 -12.60411 -12.52489 -12.24755 -12.03603 -11.78711 -11.76791 -11.55793 -11.46096 -11.34680 -10.79789 -10.72334 -10.15236 -9.39087 -9.02594 -8.33081 -6.39618 -0.28443 0.54600 1.25985 1.31821 1.37891 1.39581 1.51713 2.08034 2.29642 2.34756 2.57890 2.92758 3.02278 3.64942 3.91687 4.08398 4.24863 4.27365 4.29014 4.32080 4.45256 4.50492 4.55345 4.64572 4.71142 4.86292 4.94107 5.03339 5.16183 5.34194 5.37275 5.40857 5.48259 5.52331 5.55974 5.65851 5.83995 6.18022 6.20299 6.53972 6.66724 7.01368 7.25683 7.42831 8.82459 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.044844 B = 0.002174 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.231503 B =12873.742979 C =13472.225629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.725 5.725 3 C 0.723 3.277 4 O -0.625 6.625 5 N -0.584 5.584 6 N -0.262 5.262 7 C 0.142 3.858 8 C -0.024 4.024 9 C -0.120 4.120 10 C -0.084 4.084 11 C -0.204 4.204 12 C 0.105 3.895 13 O -0.333 6.333 14 C 0.087 3.913 15 C -0.008 4.008 16 C -0.536 4.536 17 H 0.042 0.958 18 C 0.012 3.988 19 N -0.943 5.943 20 Si 0.948 3.052 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.248 1.248 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.112 0.888 27 H 0.052 0.948 28 H 0.418 0.582 29 H 0.408 0.592 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.269 0.731 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.345 11.453 0.000 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.380 5.380 3 C 0.423 3.577 4 O -0.504 6.504 5 N -0.331 5.331 6 N -0.070 5.070 7 C -0.069 4.069 8 C -0.027 4.027 9 C -0.140 4.140 10 C -0.102 4.102 11 C -0.224 4.224 12 C 0.060 3.940 13 O -0.248 6.248 14 C 0.012 3.988 15 C -0.045 4.045 16 C -0.574 4.574 17 H 0.061 0.939 18 C -0.186 4.186 19 N -0.583 5.583 20 Si 0.771 3.229 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.172 1.172 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.071 0.929 28 H 0.255 0.745 29 H 0.250 0.750 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.144 0.856 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -25.614 11.756 -0.005 28.183 hybrid contribution 2.021 0.442 0.018 2.069 sum -23.593 12.198 0.014 26.560 Atomic orbital electron populations 1.21655 0.76947 1.04404 1.01628 1.44937 1.08461 1.07272 1.77380 1.15685 0.80174 0.84726 0.77106 1.90978 1.66583 1.32420 1.60433 1.46228 1.04657 1.05585 1.76653 1.74261 1.10637 1.07668 1.14481 1.24377 0.90200 0.98125 0.94171 1.18046 0.90941 0.91621 1.02084 1.21460 1.01144 0.90811 1.00554 1.21177 0.92428 0.99634 0.96928 1.21690 0.96569 0.97386 1.06708 1.19236 0.82651 0.95008 0.97126 1.86035 1.16861 1.33420 1.88443 1.22662 0.93124 0.82179 1.00809 1.19451 0.90914 0.96281 0.97891 1.21134 0.92209 0.92291 1.51727 0.93919 1.25890 0.99276 0.99679 0.93767 1.70028 1.10567 1.26000 1.51681 0.85686 0.77931 0.79895 0.79359 1.19033 1.20754 1.17174 1.20573 0.92767 0.96745 1.04714 0.92950 0.86937 0.92938 0.74526 0.75040 0.83058 0.83181 0.83090 0.85568 0.92268 0.92279 0.95356 0.95440 0.92186 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 10.70 127.77 1.37 2.43 16 2 N -0.73 -10.77 5.68 -500.19 -2.84 -13.61 16 3 C 0.72 15.06 8.68 179.06 1.55 16.61 16 4 O -0.63 -17.78 17.18 -4.01 -0.07 -17.85 16 5 N -0.58 -9.51 6.27 -184.75 -1.16 -10.67 16 6 N -0.26 -3.81 9.46 -52.16 -0.49 -4.30 16 7 C 0.14 1.84 10.75 87.45 0.94 2.78 16 8 C -0.02 -0.42 5.87 -20.15 -0.12 -0.54 16 9 C -0.12 -1.98 9.57 22.56 0.22 -1.77 16 10 C -0.08 -1.57 10.02 22.21 0.22 -1.34 16 11 C -0.20 -5.09 9.03 22.43 0.20 -4.89 16 12 C 0.11 2.92 6.68 22.47 0.15 3.07 16 13 O -0.33 -11.50 10.13 -92.46 -0.94 -12.44 16 14 C 0.09 3.31 4.68 71.98 0.34 3.65 16 15 C -0.01 -0.36 4.41 29.85 0.13 -0.23 16 16 C -0.54 -29.73 9.66 25.60 0.25 -29.49 16 17 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 18 C 0.01 0.68 5.47 84.65 0.46 1.14 16 19 N -0.94 -57.25 13.96 21.45 0.30 -56.95 16 20 Si 0.95 42.98 27.47 68.60 1.88 44.86 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 24 C -0.13 -2.71 9.73 22.65 0.22 -2.49 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 26 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.42 4.81 7.87 -92.71 -0.73 4.08 16 29 H 0.41 5.43 8.75 -213.32 -1.87 3.56 16 30 H 0.15 1.15 8.02 -2.91 -0.02 1.13 16 31 H 0.15 1.86 7.55 -2.91 -0.02 1.83 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.13 3.29 6.28 -2.91 -0.02 3.27 16 34 H 0.06 2.19 7.67 -2.39 -0.02 2.17 16 35 H 0.06 2.19 7.64 -2.39 -0.02 2.17 16 36 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 37 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -71.63 341.54 1.05 -70.58 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -1.57 Total: 11.43 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 5.93 Total: -11.06 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -4.19 Total: -85.53 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.01 Total: -30.29 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Total: -71.63 1.05 -70.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726736985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.277 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds