Wall clock time and date at job start Tue Mar 31 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99791 * 2 1 4 4 C 1.46903 * 110.99774 * 123.95300 * 2 1 3 5 5 C 1.50697 * 109.46858 * 170.00339 * 4 2 1 6 6 O 1.21308 * 120.00231 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99997 * 180.02562 * 5 4 2 8 8 N 1.40099 * 119.99810 * 179.97438 * 7 5 4 9 9 C 1.29836 * 119.99517 * 179.97438 * 8 7 5 10 10 C 1.47353 * 119.99695 * 180.02562 * 9 8 7 11 11 C 1.39819 * 120.08832 * 179.97438 * 10 9 8 12 12 C 1.37708 * 119.91100 * 180.02562 * 11 10 9 13 13 C 1.39080 * 120.09196 * 0.02562 * 12 11 10 14 14 O 1.35651 * 119.91220 * 179.97438 * 13 12 11 15 15 C 1.34806 * 117.00534 * 5.54991 * 14 13 12 16 16 H 1.08002 * 119.99584 * 354.94801 * 15 14 13 17 17 C 1.38632 * 120.00484 * 174.94495 * 15 14 13 18 18 N 1.31558 * 120.00195 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99887 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47286 * 90.00361 * 19 17 15 21 21 H 1.48506 * 109.47167 * 210.00289 * 19 17 15 22 22 H 1.48495 * 109.47114 * 330.00165 * 19 17 15 23 23 C 1.39078 * 120.17427 * 0.23285 * 13 12 11 24 24 C 1.37722 * 120.08653 * 359.48686 * 23 13 12 25 25 H 1.08997 * 109.47625 * 296.04454 * 1 2 3 26 26 H 1.08992 * 109.47207 * 56.04940 * 1 2 3 27 27 H 1.09002 * 109.47207 * 176.04933 * 1 2 3 28 28 H 1.08997 * 109.47096 * 183.95151 * 3 2 1 29 29 H 1.08995 * 109.47269 * 303.95527 * 3 2 1 30 30 H 1.09002 * 109.47309 * 63.95613 * 3 2 1 31 31 H 1.08999 * 109.47171 * 50.00357 * 4 2 1 32 32 H 1.08996 * 109.47128 * 290.00005 * 4 2 1 33 33 H 0.97003 * 119.99709 * 359.97438 * 7 5 4 34 34 H 1.08001 * 120.00435 * 0.02562 * 9 8 7 35 35 H 1.07996 * 120.04038 * 0.02562 * 11 10 9 36 36 H 1.08004 * 119.95437 * 180.02562 * 12 11 10 37 37 H 0.97001 * 120.00246 * 179.97438 * 18 17 15 38 38 H 1.07998 * 119.95568 * 179.74621 * 23 13 12 39 39 H 1.07991 * 120.04358 * 180.25556 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4817 -0.9524 0.9729 6 8 4.0469 -0.4928 0.0029 7 7 4.1829 -1.6307 1.9029 8 7 5.5646 -1.8045 1.7494 9 6 6.2402 -2.4575 2.6455 10 6 7.6935 -2.6398 2.4845 11 6 8.4229 -3.3422 3.4486 12 6 9.7810 -3.5100 3.2947 13 6 10.4273 -2.9813 2.1824 14 8 11.7654 -3.1483 2.0347 15 6 12.3880 -3.9314 2.9383 16 1 11.8386 -4.3265 3.7800 17 6 13.7333 -4.2298 2.7870 18 7 14.3407 -4.9945 3.6686 19 14 14.6834 -3.5472 1.3307 20 1 15.2709 -2.2329 1.6950 21 1 15.7700 -4.4902 0.9626 22 1 13.7647 -3.3759 0.1767 23 6 9.7063 -2.2774 1.2239 24 6 8.3468 -2.1102 1.3676 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5090 -1.7407 1.1756 32 1 1.7975 -0.2248 2.0628 33 1 3.7309 -1.9986 2.6783 34 1 5.7370 -2.8671 3.5089 35 1 7.9218 -3.7526 4.3127 36 1 10.3451 -4.0528 4.0387 37 1 15.2820 -5.2035 3.5625 38 1 10.2124 -1.8649 0.3636 39 1 7.7869 -1.5671 0.6208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727648052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:03 Heat of formation + Delta-G solvation = 21.938901 kcal Electronic energy + Delta-G solvation = -21395.343775 eV Core-core repulsion = 17919.598813 eV Total energy + Delta-G solvation = -3475.744962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90512 -39.27138 -37.49398 -36.83237 -35.74082 -32.72172 -32.28317 -30.43216 -29.50172 -28.02475 -27.83166 -25.57196 -23.41859 -22.36851 -22.07350 -20.63339 -20.14493 -18.14055 -17.64550 -17.24630 -16.83966 -16.12989 -15.57164 -15.14520 -14.86391 -14.76188 -14.66766 -14.02303 -13.83976 -13.74547 -13.36223 -12.97609 -12.78574 -12.67177 -12.38411 -12.31777 -12.29145 -12.06026 -11.84998 -11.36600 -11.30850 -10.88580 -10.81105 -10.28754 -10.10778 -9.86501 -9.49723 -9.24661 -8.82453 -8.72048 -8.38054 -7.24538 -6.54485 -4.19347 1.27835 2.10860 2.38147 2.43282 3.00912 3.18994 3.20807 3.35142 3.61176 4.14763 4.35083 4.47771 4.67402 4.71572 4.79557 4.83143 4.90732 4.98257 5.00689 5.09556 5.26054 5.27912 5.45243 5.49795 5.67420 5.83308 5.88606 6.04622 6.23917 6.45066 6.47603 6.60784 6.70686 6.95728 7.03996 7.13047 7.14883 7.48135 7.63183 7.67697 7.90274 8.43759 8.79588 9.40301 10.51942 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.046203 B = 0.002294 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.870371 B =12200.769447 C =12707.060775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.530 5.530 3 C 0.016 3.984 4 C 0.042 3.958 5 C 0.527 3.473 6 O -0.489 6.489 7 N -0.590 5.590 8 N -0.263 5.263 9 C 0.147 3.853 10 C -0.164 4.164 11 C -0.036 4.036 12 C -0.230 4.230 13 C 0.176 3.824 14 O -0.206 6.206 15 C -0.391 4.391 16 H 0.110 0.890 17 C 0.065 3.935 18 N -0.871 5.871 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.258 1.258 23 C -0.201 4.201 24 C -0.027 4.027 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.378 0.622 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.282 0.718 38 H 0.121 0.879 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.809 6.607 -0.516 24.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.254 5.254 3 C -0.132 4.132 4 C -0.091 4.091 5 C 0.312 3.688 6 O -0.360 6.360 7 N -0.332 5.332 8 N -0.068 5.068 9 C -0.061 4.061 10 C -0.168 4.168 11 C -0.057 4.057 12 C -0.249 4.249 13 C 0.121 3.879 14 O -0.109 6.109 15 C -0.466 4.466 16 H 0.128 0.872 17 C -0.139 4.139 18 N -0.507 5.507 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.181 1.181 23 C -0.220 4.220 24 C -0.047 4.047 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.215 0.785 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.996 7.228 -2.629 24.248 hybrid contribution -0.271 -0.181 1.690 1.721 sum -23.267 7.047 -0.940 24.329 Atomic orbital electron populations 1.22431 0.86429 1.02544 1.00873 1.61606 1.07698 1.14954 1.41162 1.22613 1.03271 0.87297 1.00022 1.21943 0.92141 1.01061 0.93956 1.20330 0.88312 0.77949 0.82180 1.90696 1.70825 1.45789 1.28644 1.46962 1.04803 1.56336 1.25133 1.75113 0.89474 1.17779 1.24477 1.24433 0.94429 0.93173 0.94086 1.17852 0.89079 1.10251 0.99639 1.20831 0.93405 0.94966 0.96486 1.21160 0.94700 1.08207 1.00821 1.19345 0.83471 0.92303 0.92755 1.83545 1.16130 1.60407 1.50772 1.20834 0.94176 1.26895 1.04670 0.87249 1.24513 0.95781 0.95379 0.98271 1.69639 1.12170 1.34091 1.34814 0.86167 0.79379 0.78918 0.82449 1.19700 1.20638 1.18144 1.20204 0.93633 1.07412 1.00761 1.20919 0.92935 0.95185 0.95683 0.95509 0.90760 0.91134 0.89140 0.91155 0.96021 0.87573 0.91657 0.78520 0.87465 0.86614 0.84443 0.90785 0.86073 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.57 60.07 0.57 0.73 16 2 N -0.53 -5.01 4.76 -252.73 -1.20 -6.21 16 3 C 0.02 0.15 9.21 60.06 0.55 0.70 16 4 C 0.04 0.34 5.45 -4.98 -0.03 0.31 16 5 C 0.53 6.61 7.67 -10.99 -0.08 6.53 16 6 O -0.49 -8.42 14.65 5.53 0.08 -8.34 16 7 N -0.59 -6.86 6.26 31.22 0.20 -6.67 16 8 N -0.26 -3.97 10.15 32.14 0.33 -3.64 16 9 C 0.15 1.98 10.74 -14.69 -0.16 1.83 16 10 C -0.16 -2.68 5.87 -105.01 -0.62 -3.29 16 11 C -0.04 -0.59 9.78 -39.18 -0.38 -0.98 16 12 C -0.23 -4.59 9.15 -39.46 -0.36 -4.95 16 13 C 0.18 3.89 6.65 -38.96 -0.26 3.63 16 14 O -0.21 -5.21 8.58 0.42 0.00 -5.21 16 15 C -0.39 -10.51 9.94 30.88 0.31 -10.20 16 16 H 0.11 2.97 5.42 -52.49 -0.28 2.68 16 17 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 18 N -0.87 -24.17 13.96 55.48 0.77 -23.40 16 19 Si 0.91 20.98 28.62 -169.99 -4.86 16.11 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.20 -3.94 9.97 -39.46 -0.39 -4.34 16 24 C -0.03 -0.48 9.57 -39.18 -0.37 -0.86 16 25 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 26 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 29 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.11 0.61 8.06 -51.93 -0.42 0.20 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.38 2.82 8.65 -182.60 -1.58 1.24 16 34 H 0.11 1.04 8.02 -52.49 -0.42 0.62 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.14 2.85 5.62 -52.48 -0.29 2.55 16 37 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.13 2.21 7.55 -52.49 -0.40 1.81 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -32.40 339.76 -7.10 -39.50 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.21 Total: 1.95 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.32 Total: -9.21 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.09 Total: -39.92 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.86 Total: 16.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.40 -7.10 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727648052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.438 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds