Wall clock time and date at job start Tue Mar 31 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99791 * 2 1 4 4 C 1.46903 * 110.99774 * 123.95300 * 2 1 3 5 5 C 1.50697 * 109.46858 * 170.00339 * 4 2 1 6 6 O 1.21308 * 120.00231 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99997 * 180.02562 * 5 4 2 8 8 N 1.40099 * 119.99810 * 179.97438 * 7 5 4 9 9 C 1.29836 * 119.99517 * 179.97438 * 8 7 5 10 10 C 1.47353 * 119.99695 * 180.02562 * 9 8 7 11 11 C 1.39819 * 120.08832 * 179.97438 * 10 9 8 12 12 C 1.37708 * 119.91100 * 180.02562 * 11 10 9 13 13 C 1.39080 * 120.09196 * 0.02562 * 12 11 10 14 14 O 1.35651 * 119.91220 * 179.97438 * 13 12 11 15 15 C 1.34806 * 117.00534 * 5.54991 * 14 13 12 16 16 H 1.08002 * 119.99584 * 354.94801 * 15 14 13 17 17 C 1.38632 * 120.00484 * 174.94495 * 15 14 13 18 18 N 1.31558 * 120.00195 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99887 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47286 * 90.00361 * 19 17 15 21 21 H 1.48506 * 109.47167 * 210.00289 * 19 17 15 22 22 H 1.48495 * 109.47114 * 330.00165 * 19 17 15 23 23 C 1.39078 * 120.17427 * 0.23285 * 13 12 11 24 24 C 1.37722 * 120.08653 * 359.48686 * 23 13 12 25 25 H 1.08997 * 109.47625 * 296.04454 * 1 2 3 26 26 H 1.08992 * 109.47207 * 56.04940 * 1 2 3 27 27 H 1.09002 * 109.47207 * 176.04933 * 1 2 3 28 28 H 1.08997 * 109.47096 * 183.95151 * 3 2 1 29 29 H 1.08995 * 109.47269 * 303.95527 * 3 2 1 30 30 H 1.09002 * 109.47309 * 63.95613 * 3 2 1 31 31 H 1.08999 * 109.47171 * 50.00357 * 4 2 1 32 32 H 1.08996 * 109.47128 * 290.00005 * 4 2 1 33 33 H 0.97003 * 119.99709 * 359.97438 * 7 5 4 34 34 H 1.08001 * 120.00435 * 0.02562 * 9 8 7 35 35 H 1.07996 * 120.04038 * 0.02562 * 11 10 9 36 36 H 1.08004 * 119.95437 * 180.02562 * 12 11 10 37 37 H 0.97001 * 120.00246 * 179.97438 * 18 17 15 38 38 H 1.07998 * 119.95568 * 179.74621 * 23 13 12 39 39 H 1.07991 * 120.04358 * 180.25556 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4817 -0.9524 0.9729 6 8 4.0469 -0.4928 0.0029 7 7 4.1829 -1.6307 1.9029 8 7 5.5646 -1.8045 1.7494 9 6 6.2402 -2.4575 2.6455 10 6 7.6935 -2.6398 2.4845 11 6 8.4229 -3.3422 3.4486 12 6 9.7810 -3.5100 3.2947 13 6 10.4273 -2.9813 2.1824 14 8 11.7654 -3.1483 2.0347 15 6 12.3880 -3.9314 2.9383 16 1 11.8386 -4.3265 3.7800 17 6 13.7333 -4.2298 2.7870 18 7 14.3407 -4.9945 3.6686 19 14 14.6834 -3.5472 1.3307 20 1 15.2709 -2.2329 1.6950 21 1 15.7700 -4.4902 0.9626 22 1 13.7647 -3.3759 0.1767 23 6 9.7063 -2.2774 1.2239 24 6 8.3468 -2.1102 1.3676 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5090 -1.7407 1.1756 32 1 1.7975 -0.2248 2.0628 33 1 3.7309 -1.9986 2.6783 34 1 5.7370 -2.8671 3.5089 35 1 7.9218 -3.7526 4.3127 36 1 10.3451 -4.0528 4.0387 37 1 15.2820 -5.2035 3.5625 38 1 10.2124 -1.8649 0.3636 39 1 7.7869 -1.5671 0.6208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727648052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:02 Heat of formation + Delta-G solvation = -2.013422 kcal Electronic energy + Delta-G solvation = -21396.382425 eV Core-core repulsion = 17919.598813 eV Total energy + Delta-G solvation = -3476.783613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96175 -40.78961 -38.79519 -37.82271 -36.89898 -34.51905 -33.57841 -31.94655 -30.69287 -28.98607 -28.44241 -27.37904 -24.53637 -23.75798 -23.18997 -21.63470 -21.42289 -19.87807 -19.17638 -18.34966 -18.00576 -16.85919 -16.61494 -16.53907 -16.05428 -15.82233 -15.73653 -15.55543 -15.44395 -15.29458 -14.38179 -14.17532 -14.12861 -14.01155 -13.98311 -13.26333 -13.07963 -12.85656 -12.84216 -12.71193 -12.59100 -12.48856 -12.34263 -11.98813 -11.36140 -11.11429 -10.96596 -10.88983 -10.22311 -9.86892 -9.33479 -8.76009 -8.51241 -6.22436 -0.02488 0.58459 1.25540 1.33114 1.38683 1.48098 1.52244 1.92132 2.27509 2.80829 3.00046 3.02340 3.18416 3.54373 3.79632 4.01371 4.13732 4.14894 4.26766 4.33210 4.35610 4.47163 4.51287 4.62722 4.68997 4.71730 4.80761 4.92596 5.05564 5.09964 5.23316 5.36757 5.53719 5.63440 5.77876 5.84219 5.85518 6.03024 6.15964 6.22838 6.64324 6.82899 7.51032 7.55416 8.59213 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.046203 B = 0.002294 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.870371 B =12200.769447 C =12707.060775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.558 5.558 3 C 0.020 3.980 4 C 0.050 3.950 5 C 0.521 3.479 6 O -0.544 6.544 7 N -0.577 5.577 8 N -0.295 5.295 9 C 0.150 3.850 10 C -0.140 4.140 11 C -0.023 4.023 12 C -0.239 4.239 13 C 0.141 3.859 14 O -0.239 6.239 15 C -0.399 4.399 16 H 0.092 0.908 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 0.964 3.036 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.265 1.265 23 C -0.202 4.202 24 C -0.034 4.034 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.136 0.864 32 H 0.095 0.905 33 H 0.404 0.596 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.124 0.876 37 H 0.285 0.715 38 H 0.125 0.875 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.957 7.060 0.091 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.283 5.283 3 C -0.128 4.128 4 C -0.082 4.082 5 C 0.309 3.691 6 O -0.418 6.418 7 N -0.322 5.322 8 N -0.101 5.101 9 C -0.059 4.059 10 C -0.144 4.144 11 C -0.044 4.044 12 C -0.259 4.259 13 C 0.090 3.910 14 O -0.145 6.145 15 C -0.475 4.475 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.787 3.213 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.189 1.189 23 C -0.222 4.222 24 C -0.054 4.054 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.154 0.846 32 H 0.113 0.887 33 H 0.244 0.756 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.141 0.859 37 H 0.095 0.905 38 H 0.143 0.857 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.218 7.683 -1.997 28.352 hybrid contribution 0.456 -0.191 1.478 1.559 sum -26.762 7.491 -0.519 27.795 Atomic orbital electron populations 1.22469 0.84296 1.03548 1.01703 1.61556 1.09639 1.14748 1.42402 1.22481 1.01132 0.88114 1.01045 1.22024 0.88586 1.02867 0.94720 1.21352 0.90043 0.76542 0.81189 1.90688 1.72204 1.47946 1.30965 1.46813 1.03378 1.55961 1.26016 1.74972 0.91911 1.17395 1.25797 1.24430 0.92645 0.93231 0.95548 1.18241 0.91075 1.07117 0.97930 1.21195 0.91710 0.93758 0.97695 1.21263 0.96441 1.08185 0.99964 1.19817 0.83004 0.93837 0.94389 1.83502 1.17718 1.62129 1.51179 1.20784 0.94567 1.27422 1.04743 0.89047 1.25221 0.96639 0.95971 1.00698 1.69709 1.12695 1.36394 1.36738 0.85300 0.78130 0.78650 0.79206 1.19133 1.19247 1.18949 1.20368 0.94437 1.06886 1.00463 1.21086 0.92139 0.95457 0.96704 0.93981 0.90747 0.89934 0.92524 0.90720 0.94516 0.84587 0.88723 0.75552 0.82462 0.81884 0.85875 0.90483 0.85744 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.57 127.69 1.22 1.47 16 2 N -0.56 -9.08 4.76 -953.50 -4.53 -13.61 16 3 C 0.02 0.36 9.21 127.69 1.18 1.53 16 4 C 0.05 0.62 5.45 85.56 0.47 1.08 16 5 C 0.52 11.69 7.67 87.66 0.67 12.36 16 6 O -0.54 -18.33 14.65 -3.12 -0.05 -18.38 16 7 N -0.58 -11.18 6.26 -173.51 -1.09 -12.26 16 8 N -0.30 -7.90 10.15 -52.22 -0.53 -8.43 16 9 C 0.15 3.36 10.74 87.39 0.94 4.30 16 10 C -0.14 -4.13 5.87 -20.11 -0.12 -4.25 16 11 C -0.02 -0.70 9.78 22.53 0.22 -0.48 16 12 C -0.24 -9.58 9.15 22.35 0.20 -9.38 16 13 C 0.14 6.39 6.65 22.67 0.15 6.54 16 14 O -0.24 -12.69 8.58 -21.40 -0.18 -12.87 16 15 C -0.40 -22.63 9.94 67.91 0.68 -21.96 16 16 H 0.09 5.30 5.42 -2.91 -0.02 5.28 16 17 C 0.01 0.80 5.49 84.83 0.47 1.27 16 18 N -0.92 -53.05 13.96 21.61 0.30 -52.75 16 19 Si 0.96 44.79 28.62 68.60 1.96 46.75 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 C -0.20 -8.01 9.97 22.35 0.22 -7.79 16 24 C -0.03 -1.16 9.57 22.53 0.22 -0.94 16 25 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 27 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 28 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 29 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.14 0.88 8.06 -2.39 -0.02 0.86 16 32 H 0.10 0.66 8.12 -2.39 -0.02 0.64 16 33 H 0.40 3.89 8.65 -213.32 -1.85 2.04 16 34 H 0.16 1.95 8.02 -2.91 -0.02 1.93 16 35 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 36 H 0.12 5.30 5.62 -2.91 -0.02 5.28 16 37 H 0.29 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.13 4.44 7.55 -2.92 -0.02 4.42 16 Total: -1.00 -76.02 339.76 1.63 -74.39 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -0.77 Total: 13.41 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 6.51 Total: -16.25 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -5.85 Total: -87.06 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.23 Total: -31.25 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.96 Total: 46.75 kcal Total: -76.02 1.63 -74.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727648052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.380 kcal (2) G-P(sol) polarization free energy of solvation -76.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds