Wall clock time and date at job start Tue Mar 31 2020 06:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36905 * 120.00573 * 2 1 4 4 H 1.07997 * 120.00309 * 201.27699 * 3 2 1 5 5 C 1.39019 * 119.99763 * 21.28052 * 3 2 1 6 6 N 1.31387 * 120.00014 * 17.23413 * 5 3 2 7 7 Si 1.86801 * 119.99893 * 197.23377 * 5 3 2 8 8 H 1.48504 * 109.46767 * 94.98717 * 7 5 3 9 9 H 1.48500 * 109.47049 * 214.98261 * 7 5 3 10 10 H 1.48500 * 109.47200 * 334.98750 * 7 5 3 11 11 C 1.34780 * 119.99294 * 180.02562 * 2 1 3 12 12 O 1.21629 * 119.99470 * 184.00972 * 11 2 1 13 13 C 1.47434 * 120.00278 * 4.00840 * 11 2 1 14 14 C 1.40407 * 120.48358 * 320.92544 * 13 11 2 15 15 C 1.36833 * 118.48958 * 179.97438 * 14 13 11 16 16 C 1.39409 * 119.38987 * 0.02562 * 15 14 13 17 17 N 1.38472 * 119.53756 * 179.97438 * 16 15 14 18 18 C 1.47018 * 110.99517 * 303.64863 * 17 16 15 19 19 C 1.53096 * 109.25652 * 177.60951 * 18 17 16 20 20 O 1.43007 * 109.25866 * 56.85218 * 19 18 17 21 21 C 1.43022 * 113.73649 * 301.32792 * 20 19 18 22 22 C 1.47017 * 111.00052 * 180.02562 * 17 16 15 23 23 N 1.32609 * 120.93127 * 359.97438 * 16 15 14 24 24 C 1.31666 * 121.64373 * 0.02562 * 23 16 15 25 25 H 1.09001 * 109.46908 * 264.84465 * 1 2 3 26 26 H 1.08999 * 109.46671 * 24.83670 * 1 2 3 27 27 H 1.08999 * 109.47393 * 144.83845 * 1 2 3 28 28 H 0.97007 * 120.00010 * 179.97438 * 6 5 3 29 29 H 1.07999 * 120.75217 * 359.69866 * 14 13 11 30 30 H 1.08008 * 120.31060 * 179.97438 * 15 14 13 31 31 H 1.09000 * 109.50617 * 297.54583 * 18 17 16 32 32 H 1.09002 * 109.50309 * 57.67402 * 18 17 16 33 33 H 1.09005 * 109.50223 * 296.91294 * 19 18 17 34 34 H 1.08997 * 109.54084 * 176.80987 * 19 18 17 35 35 H 1.09003 * 109.50526 * 298.73267 * 21 20 19 36 36 H 1.09000 * 109.54157 * 178.63168 * 21 20 19 37 37 H 1.08996 * 109.50219 * 302.32287 * 22 17 16 38 38 H 1.08997 * 109.50743 * 62.41072 * 22 17 16 39 39 H 1.08001 * 119.74492 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1856 0.0000 4 1 3.1745 1.2174 -0.3394 5 6 1.5258 2.3485 0.4370 6 7 0.4278 2.2750 1.1548 7 14 2.2485 4.0156 0.0035 8 1 1.5853 4.5403 -1.2172 9 1 2.0292 4.9581 1.1299 10 1 3.7054 3.8736 -0.2467 11 6 2.1388 -1.1673 -0.0005 12 8 3.3529 -1.1687 0.0731 13 6 1.4043 -2.4425 -0.0903 14 6 0.1907 -2.6152 0.5945 15 6 -0.4571 -3.8152 0.4821 16 6 0.1017 -4.8235 -0.3019 17 7 -0.5510 -6.0393 -0.4173 18 6 -0.7836 -6.6399 0.9043 19 6 -1.5580 -7.9496 0.7345 20 8 -0.8284 -8.8197 -0.1348 21 6 -0.5846 -8.2666 -1.4310 22 6 0.1998 -6.9603 -1.2831 23 7 1.2495 -4.6348 -0.9387 24 6 1.9052 -3.4960 -0.8576 25 1 -0.3633 -0.0923 1.0235 26 1 -0.3632 0.9326 -0.4317 27 1 -0.3634 -0.8401 -0.5918 28 1 -0.0074 3.0865 1.4600 29 1 -0.2197 -1.8205 1.1998 30 1 -1.3923 -3.9801 0.9966 31 1 0.1732 -6.8425 1.3854 32 1 -1.3628 -5.9517 1.5199 33 1 -2.5367 -7.7402 0.3025 34 1 -1.6838 -8.4273 1.7061 35 1 -1.5350 -8.0667 -1.9260 36 1 -0.0060 -8.9732 -2.0260 37 1 0.3384 -6.5059 -2.2641 38 1 1.1725 -7.1675 -0.8371 39 1 2.8375 -3.3754 -1.3895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748526220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:36 Heat of formation + Delta-G solvation = -27.830436 kcal Electronic energy + Delta-G solvation = -23095.305997 eV Core-core repulsion = 19617.402875 eV Total energy + Delta-G solvation = -3477.903122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04530 -40.65997 -39.52292 -36.85592 -36.68295 -34.26363 -33.32964 -32.16759 -31.63189 -28.54162 -28.18324 -26.57670 -25.66757 -24.10620 -23.81938 -21.67574 -21.28337 -19.13712 -18.81094 -18.22569 -17.60547 -17.00462 -16.93039 -16.55975 -16.21529 -16.00747 -15.89547 -15.75616 -15.47717 -15.28274 -14.78249 -14.42038 -14.37569 -13.77613 -13.37982 -13.33575 -13.25889 -13.15275 -12.58121 -12.56484 -12.47424 -12.36668 -12.14619 -11.68829 -11.24116 -11.06685 -10.88738 -10.85476 -10.55413 -10.35284 -9.79809 -9.21676 -8.44796 -6.02585 -0.23224 0.22433 1.36478 1.41252 1.53717 1.92253 2.23679 2.30888 2.72653 2.91337 2.95478 3.08152 3.31094 3.81271 3.81762 3.88841 3.92892 4.03935 4.10837 4.13885 4.22360 4.29856 4.50845 4.54306 4.66121 4.72285 4.78877 4.84723 4.88223 4.94960 4.96577 5.12316 5.21996 5.33174 5.39729 5.53904 5.95615 6.01775 6.13646 6.39295 6.81609 7.06957 7.33440 7.91921 8.59198 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.043390 B = 0.003287 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.153031 B = 8515.695507 C = 8893.834861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.442 5.442 3 C -0.351 4.351 4 H 0.074 0.926 5 C 0.004 3.996 6 N -0.884 5.884 7 Si 0.992 3.008 8 H -0.263 1.263 9 H -0.271 1.271 10 H -0.276 1.276 11 C 0.472 3.528 12 O -0.636 6.636 13 C -0.193 4.193 14 C -0.033 4.033 15 C -0.174 4.174 16 C 0.309 3.691 17 N -0.473 5.473 18 C 0.017 3.983 19 C 0.065 3.935 20 O -0.402 6.402 21 C 0.066 3.934 22 C 0.030 3.970 23 N -0.530 5.530 24 C 0.161 3.839 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.278 0.722 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.043 0.957 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.683 -16.748 -1.384 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.158 5.158 3 C -0.478 4.478 4 H 0.092 0.908 5 C -0.200 4.200 6 N -0.521 5.521 7 Si 0.815 3.185 8 H -0.188 1.188 9 H -0.196 1.196 10 H -0.201 1.201 11 C 0.262 3.738 12 O -0.525 6.525 13 C -0.199 4.199 14 C -0.060 4.060 15 C -0.196 4.196 16 C 0.076 3.924 17 N -0.191 5.191 18 C -0.108 4.108 19 C -0.012 4.012 20 O -0.321 6.321 21 C -0.011 4.011 22 C -0.097 4.097 23 N -0.244 5.244 24 C 0.003 3.997 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.192 0.808 31 H 0.061 0.939 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.377 -17.420 -1.911 20.366 hybrid contribution 1.010 2.056 0.536 2.352 sum -9.367 -15.364 -1.375 18.047 Atomic orbital electron populations 1.21765 0.79306 1.00946 1.00624 1.43735 1.06896 1.04467 1.60733 1.19689 0.99076 0.85156 1.43917 0.90777 1.26108 0.96905 1.02894 0.94046 1.70043 1.19930 1.30956 1.31213 0.84950 0.78464 0.76603 0.78529 1.18785 1.19611 1.20051 1.18367 0.87080 0.84153 0.84183 1.90570 1.15704 1.87725 1.58496 1.20826 0.98522 0.96082 1.04481 1.21822 0.91489 0.97946 0.94700 1.21448 1.03200 0.92086 1.02832 1.20237 0.87951 0.92790 0.91462 1.59299 1.43478 1.01915 1.14392 1.23168 1.01486 0.98617 0.87566 1.22875 0.94216 0.87979 0.96110 1.87983 1.76321 1.42776 1.25017 1.22840 1.00109 0.93213 0.84923 1.22687 0.95571 0.93133 0.98311 1.67668 1.07793 1.23685 1.25282 1.22511 0.97519 0.86392 0.93315 0.92489 0.91935 0.92138 0.91166 0.82995 0.80801 0.93862 0.86526 0.90699 0.85599 0.91154 0.86353 0.89214 0.93830 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.06 7.20 127.77 0.92 5.98 16 2 N -0.44 -23.27 3.01 -662.62 -2.00 -25.26 16 3 C -0.35 -20.03 9.26 84.09 0.78 -19.26 16 4 H 0.07 4.55 7.45 -2.91 -0.02 4.53 16 5 C 0.00 0.21 4.95 84.95 0.42 0.63 16 6 N -0.88 -45.34 10.92 21.68 0.24 -45.11 16 7 Si 0.99 41.51 29.59 68.60 2.03 43.54 16 8 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 9 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 11 C 0.47 24.53 7.31 86.67 0.63 25.16 16 12 O -0.64 -38.12 16.63 -4.12 -0.07 -38.19 16 13 C -0.19 -7.86 5.23 -19.99 -0.10 -7.97 16 14 C -0.03 -1.10 7.65 22.47 0.17 -0.93 16 15 C -0.17 -4.54 9.15 22.22 0.20 -4.34 16 16 C 0.31 8.68 6.40 133.25 0.85 9.54 16 17 N -0.47 -10.55 4.74 -700.98 -3.32 -13.87 16 18 C 0.02 0.29 5.39 86.31 0.46 0.76 16 19 C 0.06 0.87 7.01 72.01 0.50 1.38 16 20 O -0.40 -7.38 10.83 -148.98 -1.61 -8.99 16 21 C 0.07 1.06 7.01 72.01 0.50 1.57 16 22 C 0.03 0.65 4.81 86.31 0.42 1.07 16 23 N -0.53 -17.56 8.66 -192.25 -1.67 -19.22 16 24 C 0.16 6.06 10.80 85.05 0.92 6.98 16 25 H 0.06 2.42 6.60 -2.39 -0.02 2.41 16 26 H 0.06 2.88 6.64 -2.39 -0.02 2.86 16 27 H 0.06 2.26 5.93 -2.39 -0.01 2.24 16 28 H 0.28 13.21 8.31 -92.70 -0.77 12.44 16 29 H 0.15 4.87 5.40 -2.91 -0.02 4.86 16 30 H 0.17 3.15 7.16 -2.91 -0.02 3.13 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.12 1.50 6.79 -2.39 -0.02 1.48 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.84 16 34 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 2.05 7.85 -2.39 -0.02 2.03 16 38 H 0.04 1.09 8.02 -2.39 -0.02 1.07 16 39 H 0.16 5.88 8.05 -2.91 -0.02 5.86 16 Total: -1.00 -70.69 316.74 1.36 -69.34 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.07 Total: 17.19 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 6.68 Total: 20.57 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -6.75 Total: -103.46 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -1.68 Total: -47.18 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -70.69 1.36 -69.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748526220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.506 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds