Wall clock time and date at job start Tue Mar 31 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00035 * 2 1 4 4 C 1.34782 * 120.00084 * 180.02562 * 2 1 3 5 5 O 1.21591 * 120.00007 * 4.62530 * 4 2 1 6 6 N 1.34776 * 119.99686 * 184.62394 * 4 2 1 7 7 N 1.40100 * 119.99468 * 185.07084 * 6 4 2 8 8 C 1.34786 * 119.99753 * 174.94639 * 7 6 4 9 9 O 1.21279 * 119.99714 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99772 * 180.02562 * 8 7 6 11 11 C 1.50704 * 109.46745 * 180.02562 * 10 8 7 12 12 C 1.37640 * 120.12801 * 265.30309 * 11 10 8 13 13 C 1.38613 * 120.24745 * 180.32315 * 12 11 10 14 14 C 1.38649 * 120.50109 * 359.67335 * 13 12 11 15 15 C 1.37597 * 120.24894 * 359.97438 * 14 13 12 16 16 C 1.40692 * 120.12782 * 85.00396 * 11 10 8 17 17 C 1.41394 * 120.24684 * 359.97432 * 16 11 10 18 18 H 1.08008 * 119.99864 * 334.09328 * 17 16 11 19 19 C 1.39945 * 120.00168 * 154.09799 * 17 16 11 20 20 N 1.30817 * 120.00105 * 334.42330 * 19 17 16 21 21 Si 1.86798 * 120.00163 * 154.42441 * 19 17 16 22 22 H 1.48494 * 109.47509 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47268 * 300.00162 * 21 19 17 24 24 H 1.48508 * 109.47055 * 59.99389 * 21 19 17 25 25 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46889 * 299.99073 * 1 2 3 27 27 H 1.08994 * 109.47392 * 59.99987 * 1 2 3 28 28 H 1.08997 * 109.47421 * 273.44256 * 3 2 1 29 29 H 1.09003 * 109.46698 * 33.44267 * 3 2 1 30 30 H 1.08992 * 109.47061 * 153.44090 * 3 2 1 31 31 H 0.97000 * 120.00308 * 5.07476 * 6 4 2 32 32 H 0.96996 * 120.00484 * 354.95251 * 7 6 4 33 33 H 1.09000 * 109.47097 * 60.00507 * 10 8 7 34 34 H 1.08999 * 109.47124 * 300.00069 * 10 8 7 35 35 H 1.08006 * 119.87768 * 0.02562 * 12 11 10 36 36 H 1.07998 * 119.74503 * 179.69533 * 13 12 11 37 37 H 1.07998 * 119.87451 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.12471 * 180.02562 * 15 14 13 39 39 H 0.97011 * 120.00055 * 353.79616 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5339 -2.2185 -0.0859 6 7 3.4834 -1.1691 0.0936 7 7 4.1913 -2.3733 -0.0137 8 6 5.5391 -2.3642 -0.0219 9 8 6.1389 -1.3136 0.0641 10 6 6.3006 -3.6594 -0.1378 11 6 7.7805 -3.3751 -0.1227 12 6 8.4699 -3.2386 -1.3061 13 6 9.8324 -2.9837 -1.2951 14 6 10.5149 -2.8566 -0.0950 15 6 9.8447 -2.9820 1.1002 16 6 8.4615 -3.2418 1.1012 17 6 7.7625 -3.3732 2.3232 18 1 6.7046 -3.1598 2.3658 19 6 8.4414 -3.7795 3.4775 20 7 9.5298 -4.4983 3.3774 21 14 7.7934 -3.2957 5.1614 22 1 8.6859 -3.8468 6.2124 23 1 7.7549 -1.8152 5.2703 24 1 6.4235 -3.8408 5.3400 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 2.3257 1.6143 -1.0258 29 1 1.6364 2.0121 0.5664 30 1 3.1751 1.1238 0.4595 31 1 3.9608 -0.3367 0.2356 32 1 3.7116 -3.2135 -0.0821 33 1 6.0350 -4.1547 -1.0717 34 1 6.0467 -4.3066 0.7017 35 1 7.9483 -3.3353 -2.2469 36 1 10.3662 -2.8830 -2.2285 37 1 11.5763 -2.6575 -0.0982 38 1 10.3782 -2.8822 2.0339 39 1 9.8169 -4.8255 2.5105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776969923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:55 Heat of formation + Delta-G solvation = -8.264712 kcal Electronic energy + Delta-G solvation = -22883.189215 eV Core-core repulsion = 19406.134526 eV Total energy + Delta-G solvation = -3477.054689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.50822 -39.12486 -37.57425 -35.80946 -35.06648 -33.86464 -32.16067 -30.82331 -29.23753 -28.17851 -26.93067 -25.71280 -24.83464 -21.36196 -20.96582 -20.85648 -19.62427 -18.20295 -17.79301 -17.59042 -16.22075 -16.09408 -15.52055 -15.12883 -14.91579 -14.19867 -14.15340 -14.08882 -13.81459 -13.41143 -13.38305 -12.85252 -12.79908 -12.35861 -12.25312 -12.04776 -11.78879 -11.45295 -11.23298 -10.93016 -10.87193 -10.49024 -10.43891 -10.39193 -9.68162 -9.54163 -9.39658 -9.04523 -8.96771 -8.06431 -7.58315 -7.53002 -7.13961 -4.44175 1.74989 2.76367 2.83338 2.84999 3.16274 3.19810 3.23120 3.28968 3.37161 4.02103 4.40828 4.58690 4.76571 4.99803 5.03898 5.29023 5.29946 5.35547 5.57695 5.61568 5.83864 5.93230 6.07845 6.15539 6.29169 6.33966 6.44943 6.66146 6.93397 6.98503 7.18767 7.30813 7.41136 7.66996 7.81362 7.83609 7.87033 7.94159 8.18918 8.25664 8.32836 8.75566 8.76987 8.90635 10.06045 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004487 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.943256 B = 6238.803817 C = 7400.544441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.633 5.633 3 C 0.077 3.923 4 C 0.709 3.291 5 O -0.592 6.592 6 N -0.539 5.539 7 N -0.524 5.524 8 C 0.517 3.483 9 O -0.523 6.523 10 C -0.056 4.056 11 C -0.189 4.189 12 C -0.065 4.065 13 C -0.253 4.253 14 C -0.084 4.084 15 C -0.215 4.215 16 C 0.118 3.882 17 C -0.517 4.517 18 H 0.072 0.928 19 C 0.042 3.958 20 N -0.796 5.796 21 Si 1.059 2.941 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.426 0.574 32 H 0.427 0.573 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 6.880 -4.157 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.373 5.373 3 C -0.066 4.066 4 C 0.409 3.591 5 O -0.470 6.470 6 N -0.291 5.291 7 N -0.276 5.276 8 C 0.304 3.696 9 O -0.395 6.395 10 C -0.098 4.098 11 C -0.191 4.191 12 C -0.084 4.084 13 C -0.273 4.273 14 C -0.103 4.103 15 C -0.234 4.234 16 C 0.115 3.885 17 C -0.545 4.545 18 H 0.091 0.909 19 C -0.181 4.181 20 N -0.419 5.419 21 Si 0.883 3.117 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.202 1.202 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.270 0.730 32 H 0.269 0.731 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.821 6.781 -2.539 14.724 hybrid contribution -0.306 0.385 -1.655 1.727 sum -13.127 7.165 -4.194 15.532 Atomic orbital electron populations 1.21589 0.77204 1.04435 1.01042 1.46726 1.07151 1.04428 1.78983 1.21784 0.96927 0.85560 1.02343 1.15526 0.80479 0.84481 0.78599 1.90913 1.67409 1.29934 1.58765 1.43744 1.03253 1.03715 1.78350 1.45250 1.04190 0.99918 1.78246 1.21781 0.78759 0.93657 0.75355 1.90690 1.67567 1.33069 1.48188 1.20177 0.93647 0.92560 1.03378 1.18933 0.91805 1.14903 0.93462 1.20374 0.94153 0.98263 0.95572 1.20264 0.94502 1.16389 0.96115 1.20618 0.97399 0.99031 0.93253 1.21141 0.95485 1.10295 0.96504 1.17381 0.91517 0.87721 0.91902 1.20462 0.98108 1.41975 0.93962 0.90942 1.26922 0.93521 0.92395 1.05217 1.70449 1.19466 1.20269 1.31721 0.83718 0.76507 0.77582 0.73866 1.19829 1.20091 1.20183 0.89225 0.92280 0.92287 0.92090 0.90426 0.91253 0.73013 0.73110 0.89828 0.87950 0.89458 0.89387 0.89336 0.87733 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 10.70 59.84 0.64 1.47 16 2 N -0.63 -6.79 3.27 -195.34 -0.64 -7.43 16 3 C 0.08 0.59 10.47 59.85 0.63 1.22 16 4 C 0.71 10.30 8.39 -86.91 -0.73 9.57 16 5 O -0.59 -10.24 15.53 5.29 0.08 -10.16 16 6 N -0.54 -8.11 6.14 27.64 0.17 -7.94 16 7 N -0.52 -8.53 6.26 31.22 0.20 -8.34 16 8 C 0.52 9.97 7.58 -10.98 -0.08 9.89 16 9 O -0.52 -11.99 15.88 5.56 0.09 -11.90 16 10 C -0.06 -1.08 5.18 -29.03 -0.15 -1.23 16 11 C -0.19 -4.41 4.43 -103.91 -0.46 -4.87 16 12 C -0.07 -1.46 9.66 -39.66 -0.38 -1.84 16 13 C -0.25 -5.71 10.05 -39.29 -0.39 -6.11 16 14 C -0.08 -1.99 10.02 -39.66 -0.40 -2.39 16 15 C -0.22 -5.56 7.96 -38.87 -0.31 -5.87 16 16 C 0.12 3.06 5.29 -106.83 -0.57 2.49 16 17 C -0.52 -13.40 8.07 -37.74 -0.30 -13.70 16 18 H 0.07 1.85 6.74 -52.48 -0.35 1.49 16 19 C 0.04 1.05 4.93 -17.34 -0.09 0.96 16 20 N -0.80 -20.84 12.31 55.55 0.68 -20.16 16 21 Si 1.06 21.83 30.00 -169.99 -5.10 16.73 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 25 H 0.09 0.90 6.91 -51.93 -0.36 0.54 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.07 0.56 5.98 -51.93 -0.31 0.25 16 31 H 0.43 6.05 5.60 -182.60 -1.02 5.03 16 32 H 0.43 6.28 8.01 -182.60 -1.46 4.82 16 33 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 34 H 0.10 1.92 7.06 -51.93 -0.37 1.56 16 35 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.10 2.78 6.52 -52.49 -0.34 2.44 16 39 H 0.30 8.02 6.73 -40.82 -0.27 7.74 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -32.49 331.74 -8.78 -41.27 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.66 Total: 13.33 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.60 Total: -10.41 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.41 Total: -43.86 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.17 Total: -22.06 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.10 Total: 16.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.49 -8.78 -41.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776969923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.003 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds