Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00035 * 2 1 4 4 C 1.34782 * 120.00084 * 180.02562 * 2 1 3 5 5 O 1.21591 * 120.00007 * 4.62530 * 4 2 1 6 6 N 1.34776 * 119.99686 * 184.62394 * 4 2 1 7 7 N 1.40100 * 119.99468 * 185.07084 * 6 4 2 8 8 C 1.34786 * 119.99753 * 174.94639 * 7 6 4 9 9 O 1.21279 * 119.99714 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99772 * 180.02562 * 8 7 6 11 11 C 1.50704 * 109.46745 * 180.02562 * 10 8 7 12 12 C 1.37640 * 120.12801 * 265.30309 * 11 10 8 13 13 C 1.38613 * 120.24745 * 180.32315 * 12 11 10 14 14 C 1.38649 * 120.50109 * 359.67335 * 13 12 11 15 15 C 1.37597 * 120.24894 * 359.97438 * 14 13 12 16 16 C 1.40692 * 120.12782 * 85.00396 * 11 10 8 17 17 C 1.41394 * 120.24684 * 359.97432 * 16 11 10 18 18 H 1.08008 * 119.99864 * 334.09328 * 17 16 11 19 19 C 1.39945 * 120.00168 * 154.09799 * 17 16 11 20 20 N 1.30817 * 120.00105 * 334.42330 * 19 17 16 21 21 Si 1.86798 * 120.00163 * 154.42441 * 19 17 16 22 22 H 1.48494 * 109.47509 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47268 * 300.00162 * 21 19 17 24 24 H 1.48508 * 109.47055 * 59.99389 * 21 19 17 25 25 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46889 * 299.99073 * 1 2 3 27 27 H 1.08994 * 109.47392 * 59.99987 * 1 2 3 28 28 H 1.08997 * 109.47421 * 273.44256 * 3 2 1 29 29 H 1.09003 * 109.46698 * 33.44267 * 3 2 1 30 30 H 1.08992 * 109.47061 * 153.44090 * 3 2 1 31 31 H 0.97000 * 120.00308 * 5.07476 * 6 4 2 32 32 H 0.96996 * 120.00484 * 354.95251 * 7 6 4 33 33 H 1.09000 * 109.47097 * 60.00507 * 10 8 7 34 34 H 1.08999 * 109.47124 * 300.00069 * 10 8 7 35 35 H 1.08006 * 119.87768 * 0.02562 * 12 11 10 36 36 H 1.07998 * 119.74503 * 179.69533 * 13 12 11 37 37 H 1.07998 * 119.87451 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.12471 * 180.02562 * 15 14 13 39 39 H 0.97011 * 120.00055 * 353.79616 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5339 -2.2185 -0.0859 6 7 3.4834 -1.1691 0.0936 7 7 4.1913 -2.3733 -0.0137 8 6 5.5391 -2.3642 -0.0219 9 8 6.1389 -1.3136 0.0641 10 6 6.3006 -3.6594 -0.1378 11 6 7.7805 -3.3751 -0.1227 12 6 8.4699 -3.2386 -1.3061 13 6 9.8324 -2.9837 -1.2951 14 6 10.5149 -2.8566 -0.0950 15 6 9.8447 -2.9820 1.1002 16 6 8.4615 -3.2418 1.1012 17 6 7.7625 -3.3732 2.3232 18 1 6.7046 -3.1598 2.3658 19 6 8.4414 -3.7795 3.4775 20 7 9.5298 -4.4983 3.3774 21 14 7.7934 -3.2957 5.1614 22 1 8.6859 -3.8468 6.2124 23 1 7.7549 -1.8152 5.2703 24 1 6.4235 -3.8408 5.3400 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 2.3257 1.6143 -1.0258 29 1 1.6364 2.0121 0.5664 30 1 3.1751 1.1238 0.4595 31 1 3.9608 -0.3367 0.2356 32 1 3.7116 -3.2135 -0.0821 33 1 6.0350 -4.1547 -1.0717 34 1 6.0467 -4.3066 0.7017 35 1 7.9483 -3.3353 -2.2469 36 1 10.3662 -2.8830 -2.2285 37 1 11.5763 -2.6575 -0.0982 38 1 10.3782 -2.8822 2.0339 39 1 9.8169 -4.8255 2.5105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776969923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -29.684241 kcal Electronic energy + Delta-G solvation = -22884.118035 eV Core-core repulsion = 19406.134526 eV Total energy + Delta-G solvation = -3477.983509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69981 -40.59553 -39.30460 -36.81671 -36.37415 -35.72975 -33.78172 -32.19657 -31.09713 -28.98402 -28.37317 -26.94024 -26.44198 -22.87974 -22.79441 -22.13588 -21.12800 -19.63982 -19.27308 -18.89551 -17.48412 -17.23856 -16.83943 -16.63265 -16.46993 -15.94111 -15.71307 -15.33519 -15.08600 -14.90569 -14.60210 -14.20922 -13.86203 -13.56251 -13.48254 -13.37710 -13.00707 -12.95394 -12.93180 -12.61842 -12.36957 -12.23728 -11.99097 -11.61762 -11.48401 -11.21889 -11.13007 -10.83115 -9.96143 -9.44033 -9.42680 -9.28979 -9.05246 -6.39253 0.52518 0.99541 1.02642 1.47918 1.48862 1.62537 1.76124 1.94710 2.26615 2.31562 2.71467 3.19905 3.60415 3.96364 4.13738 4.26408 4.30122 4.38708 4.48525 4.49566 4.57799 4.71476 4.72742 4.80850 4.93838 4.96677 5.09419 5.21948 5.33234 5.47168 5.51418 5.67119 5.80208 5.85643 5.99312 6.06733 6.17039 6.30703 6.46498 6.67638 6.86452 7.00033 7.02596 7.45422 8.09678 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004487 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.943256 B = 6238.803817 C = 7400.544441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.628 5.628 3 C 0.071 3.929 4 C 0.703 3.297 5 O -0.625 6.625 6 N -0.541 5.541 7 N -0.512 5.512 8 C 0.523 3.477 9 O -0.565 6.565 10 C -0.057 4.057 11 C -0.192 4.192 12 C -0.076 4.076 13 C -0.250 4.250 14 C -0.095 4.095 15 C -0.244 4.244 16 C 0.089 3.911 17 C -0.542 4.542 18 H 0.069 0.931 19 C 0.007 3.993 20 N -0.818 5.818 21 Si 1.105 2.895 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.257 1.257 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.429 0.571 32 H 0.436 0.564 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.957 7.902 -5.184 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.366 5.366 3 C -0.071 4.071 4 C 0.403 3.597 5 O -0.505 6.505 6 N -0.293 5.293 7 N -0.263 5.263 8 C 0.311 3.689 9 O -0.441 6.441 10 C -0.098 4.098 11 C -0.194 4.194 12 C -0.094 4.094 13 C -0.269 4.269 14 C -0.113 4.113 15 C -0.263 4.263 16 C 0.087 3.913 17 C -0.571 4.571 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.442 5.442 21 Si 0.924 3.076 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.181 1.181 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.274 0.726 32 H 0.279 0.721 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.604 7.815 -3.587 16.948 hybrid contribution 0.172 0.136 -1.521 1.537 sum -14.432 7.951 -5.108 17.251 Atomic orbital electron populations 1.21799 0.75654 1.03817 1.03377 1.46934 1.08115 1.04173 1.77376 1.22022 0.96791 0.84618 1.03646 1.15761 0.80090 0.85273 0.78533 1.90888 1.67870 1.31476 1.60300 1.43843 1.03543 1.03139 1.78816 1.44939 1.03664 1.01048 1.76651 1.21566 0.79470 0.92938 0.74957 1.90673 1.68570 1.34310 1.50508 1.20197 0.91314 0.92796 1.05461 1.19386 0.94053 1.12989 0.92949 1.20825 0.94420 0.97446 0.96673 1.20716 0.94975 1.14384 0.96827 1.20911 0.98640 0.98712 0.93034 1.21147 0.96055 1.12476 0.96646 1.17742 0.91933 0.88436 0.93235 1.20558 0.98073 1.43577 0.94854 0.91316 1.28140 0.93104 0.91417 1.08311 1.70547 1.20829 1.22122 1.30673 0.83145 0.76935 0.77359 0.70195 1.19431 1.19873 1.18148 0.91296 0.89893 0.89963 0.90866 0.87514 0.91965 0.72589 0.72115 0.85926 0.87955 0.86052 0.86295 0.87279 0.89872 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.35 10.70 127.77 1.37 2.72 16 2 N -0.63 -12.13 3.27 -890.18 -2.91 -15.04 16 3 C 0.07 0.90 10.47 127.77 1.34 2.24 16 4 C 0.70 19.57 8.39 179.05 1.50 21.07 16 5 O -0.62 -21.15 15.53 -4.00 -0.06 -21.21 16 6 N -0.54 -15.70 6.14 -184.74 -1.13 -16.83 16 7 N -0.51 -16.14 6.26 -173.52 -1.09 -17.23 16 8 C 0.52 19.71 7.58 87.66 0.66 20.37 16 9 O -0.56 -25.76 15.88 -3.03 -0.05 -25.81 16 10 C -0.06 -2.10 5.18 29.10 0.15 -1.94 16 11 C -0.19 -8.83 4.43 -19.40 -0.09 -8.92 16 12 C -0.08 -3.22 9.66 22.22 0.21 -3.00 16 13 C -0.25 -10.78 10.05 22.46 0.23 -10.56 16 14 C -0.09 -4.44 10.02 22.22 0.22 -4.22 16 15 C -0.24 -12.98 7.96 22.73 0.18 -12.80 16 16 C 0.09 4.72 5.29 -21.29 -0.11 4.61 16 17 C -0.54 -28.83 8.07 23.46 0.19 -28.64 16 18 H 0.07 3.58 6.74 -2.91 -0.02 3.56 16 19 C 0.01 0.36 4.93 85.26 0.42 0.78 16 20 N -0.82 -44.43 12.31 21.83 0.27 -44.16 16 21 Si 1.11 44.55 30.00 68.60 2.06 46.61 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 25 H 0.07 1.30 6.91 -2.38 -0.02 1.28 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.11 0.75 8.10 -2.39 -0.02 0.73 16 30 H 0.06 0.90 5.98 -2.39 -0.01 0.88 16 31 H 0.43 11.83 5.60 -213.32 -1.19 10.63 16 32 H 0.44 12.30 8.01 -213.33 -1.71 10.59 16 33 H 0.12 3.50 8.06 -2.39 -0.02 3.48 16 34 H 0.10 3.79 7.06 -2.39 -0.02 3.78 16 35 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.08 4.67 6.52 -2.91 -0.02 4.65 16 39 H 0.28 16.02 6.73 -92.70 -0.62 15.40 16 Total: -1.00 -72.06 331.74 1.70 -70.37 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -1.66 Total: 41.61 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 6.28 Total: -18.30 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -4.87 Total: -93.27 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.11 Total: -47.02 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.06 Total: 46.61 kcal Total: -72.06 1.70 -70.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776969923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.681 kcal (2) G-P(sol) polarization free energy of solvation -72.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds