Wall clock time and date at job start Tue Mar 31 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39598 * 120.10506 * 206.07394 * 3 2 1 5 5 C 1.38002 * 120.00936 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.21676 * 359.79297 * 5 4 3 7 7 C 1.38979 * 120.20977 * 0.46465 * 6 5 4 8 8 N 1.39697 * 119.99974 * 179.79032 * 7 6 5 9 9 C 1.46509 * 119.99983 * 179.72328 * 8 7 6 10 10 C 1.46499 * 120.00213 * 359.72001 * 8 7 6 11 11 C 1.50703 * 109.46900 * 90.00286 * 10 8 7 12 12 C 1.38635 * 119.74907 * 90.00058 * 11 10 8 13 13 C 1.37622 * 120.24668 * 179.69950 * 12 11 10 14 14 C 1.40718 * 119.74225 * 0.28236 * 13 12 11 15 15 C 1.41403 * 120.24139 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99744 * 24.37555 * 15 14 13 17 17 C 1.39941 * 120.00009 * 204.37485 * 15 14 13 18 18 N 1.30826 * 119.99936 * 17.84547 * 17 15 14 19 19 Si 1.86794 * 120.00203 * 197.84149 * 17 15 14 20 20 H 1.48503 * 109.47022 * 60.00288 * 19 17 15 21 21 H 1.48503 * 109.47309 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46979 * 300.00013 * 19 17 15 23 23 C 1.40715 * 119.51379 * 359.97438 * 14 13 12 24 24 C 1.37609 * 119.74619 * 0.02562 * 23 14 13 25 25 C 1.38677 * 119.99766 * 359.51297 * 7 6 5 26 26 H 4.52049 * 14.03082 * 0.02562 * 4 2 1 27 27 H 1.08006 * 119.99573 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.88976 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.88857 * 180.23102 * 6 5 4 30 30 H 1.08995 * 109.46751 * 270.00107 * 9 8 7 31 31 H 1.09005 * 109.46714 * 29.99845 * 9 8 7 32 32 H 1.08999 * 109.47049 * 149.99927 * 9 8 7 33 33 H 1.08995 * 109.46857 * 330.00218 * 10 8 7 34 34 H 1.09003 * 109.47219 * 210.00115 * 10 8 7 35 35 H 1.07993 * 119.87433 * 359.97438 * 12 11 10 36 36 H 1.07989 * 120.12702 * 180.29616 * 13 12 11 37 37 H 0.96996 * 120.00202 * 180.02562 * 18 17 15 38 38 H 1.08006 * 120.12439 * 180.02562 * 23 14 13 39 39 H 1.08000 * 119.87771 * 180.02562 * 24 23 14 40 40 H 1.07994 * 120.11371 * 180.23288 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3057 1.0857 0.5308 5 6 4.6857 1.0840 0.5303 6 6 5.3799 0.0082 0.0091 7 6 4.6925 -1.0745 -0.5265 8 7 5.3985 -2.1574 -1.0560 9 6 4.6738 -3.3014 -1.6151 10 6 6.8634 -2.1492 -1.0523 11 6 7.3660 -2.7704 0.2254 12 6 7.6028 -4.1353 0.2801 13 6 8.0677 -4.7123 1.4398 14 6 8.2969 -3.9122 2.5745 15 6 8.7750 -4.4940 3.7713 16 1 9.3281 -5.4210 3.7377 17 6 8.5314 -3.8687 4.9993 18 7 7.5917 -2.9637 5.0974 19 14 9.5478 -4.3260 6.4982 20 1 10.9807 -4.0433 6.2297 21 1 9.0954 -3.5273 7.6656 22 1 9.3748 -5.7715 6.7913 23 6 8.0479 -2.5289 2.5090 24 6 7.5832 -1.9734 1.3389 25 6 3.3058 -1.0822 -0.5301 26 1 -1.0500 -0.0011 0.0000 27 1 2.7669 1.9267 0.9420 28 1 5.2251 1.9243 0.9418 29 1 6.4599 0.0108 0.0148 30 1 4.4943 -4.0364 -0.8305 31 1 3.7205 -2.9639 -2.0220 32 1 5.2675 -3.7549 -2.4088 33 1 7.2211 -1.1219 -1.1222 34 1 7.2322 -2.7210 -1.9039 35 1 7.4261 -4.7472 -0.5920 36 1 8.2561 -5.7749 1.4787 37 1 7.4230 -2.5300 5.9485 38 1 8.2207 -1.9054 3.3739 39 1 7.3918 -0.9118 1.2862 40 1 2.7697 -1.9242 -0.9424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784148046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:57 Heat of formation + Delta-G solvation = 104.946589 kcal Electronic energy + Delta-G solvation = -21664.871516 eV Core-core repulsion = 18603.575301 eV Total energy + Delta-G solvation = -3061.296215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.48737 -37.69977 -36.01765 -33.74993 -33.39337 -31.08921 -29.90871 -29.60550 -29.08358 -27.54593 -25.30308 -23.68528 -22.72502 -21.11637 -20.92149 -19.95187 -18.40471 -17.33986 -16.75864 -15.54788 -15.38559 -15.32673 -14.87696 -14.47799 -14.00765 -13.74085 -13.45747 -13.43656 -13.28316 -12.74106 -12.50329 -12.02303 -11.89453 -11.68078 -11.52699 -11.38717 -11.20108 -11.08421 -11.02331 -10.72001 -10.69766 -10.43294 -10.35210 -9.84134 -9.42666 -9.27854 -9.14264 -8.37282 -7.48255 -7.37208 -6.89630 -6.78458 -4.38420 1.22830 1.86332 2.66653 2.80715 3.04228 3.05537 3.06366 3.12285 3.23815 3.67444 3.90605 4.30350 4.37093 4.60934 5.12151 5.26400 5.40352 5.45946 5.58852 5.64426 5.68063 5.78408 5.81704 5.95109 6.01900 6.06081 6.10810 6.28713 6.32532 6.34814 6.56010 6.69878 6.81325 6.92737 7.04140 7.08007 7.25205 7.33838 7.56887 7.58008 7.65446 7.79773 7.86380 8.02566 8.09886 8.27311 8.61411 8.86406 8.94845 10.15286 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.004028 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.887787 B = 6948.846823 C = 7793.766500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C 0.042 3.958 4 C -0.163 4.163 5 C -0.072 4.072 6 C -0.181 4.181 7 C 0.232 3.768 8 N -0.620 5.620 9 C 0.095 3.905 10 C 0.183 3.817 11 C -0.240 4.240 12 C -0.075 4.075 13 C -0.230 4.230 14 C 0.115 3.885 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.789 5.789 19 Si 0.908 3.092 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.167 4.167 24 C -0.084 4.084 25 C -0.181 4.181 26 H 0.221 0.779 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.282 0.718 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 5.255 -9.018 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.130 4.130 3 C 0.041 3.959 4 C -0.183 4.183 5 C -0.091 4.091 6 C -0.203 4.203 7 C 0.128 3.872 8 N -0.328 5.328 9 C -0.048 4.048 10 C 0.062 3.938 11 C -0.242 4.242 12 C -0.094 4.094 13 C -0.250 4.250 14 C 0.112 3.888 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.414 5.414 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.186 4.186 24 C -0.103 4.103 25 C -0.204 4.204 26 H 0.238 0.762 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.633 5.227 -8.949 12.305 hybrid contribution 0.107 -0.384 0.957 1.036 sum -6.526 4.843 -7.993 11.398 Atomic orbital electron populations 1.24769 0.95680 1.00598 1.00677 1.20244 0.92192 1.00221 1.00369 1.15630 0.85886 0.94924 0.99438 1.20798 0.94063 0.98449 1.04987 1.20767 0.93547 0.97550 0.97255 1.20954 1.00349 0.94277 1.04718 1.17651 0.90406 0.87499 0.91622 1.46865 1.05315 1.16891 1.63733 1.21569 0.96553 0.88783 0.97931 1.20145 0.77770 0.99947 0.95941 1.19366 1.14624 0.94305 0.95921 1.20309 0.99218 0.93539 0.96316 1.20937 1.11205 0.97694 0.95136 1.17627 0.87773 0.91526 0.91843 1.19591 1.31227 1.07817 0.90601 0.90510 1.25919 0.93714 0.93746 1.00815 1.69825 1.23482 1.20702 1.27345 0.86380 0.81062 0.79582 0.79788 1.18782 1.20281 1.19007 1.21301 1.05380 0.95251 0.96712 1.20600 0.99256 0.97139 0.93320 1.20586 0.92153 0.99743 1.07886 0.76189 0.86563 0.85933 0.85291 0.93344 0.92105 0.91852 0.91476 0.91665 0.89895 0.89211 0.90736 0.86549 0.89337 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.34 19.25 29.55 0.57 -1.77 16 2 C -0.13 -1.89 13.24 -38.84 -0.51 -2.40 16 3 C 0.04 0.66 5.72 -107.03 -0.61 0.05 16 4 C -0.16 -2.40 9.75 -39.16 -0.38 -2.78 16 5 C -0.07 -1.06 10.02 -39.67 -0.40 -1.46 16 6 C -0.18 -2.92 8.44 -39.31 -0.33 -3.25 16 7 C 0.23 3.87 6.55 -83.84 -0.55 3.32 16 8 N -0.62 -10.01 2.99 -181.04 -0.54 -10.55 16 9 C 0.10 1.29 10.23 59.85 0.61 1.91 16 10 C 0.18 3.03 5.39 -5.19 -0.03 3.00 16 11 C -0.24 -4.96 5.49 -104.32 -0.57 -5.54 16 12 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 16 13 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 14 C 0.11 3.05 5.57 -106.82 -0.60 2.45 16 15 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 16 16 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 17 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 18 N -0.79 -20.51 10.95 55.55 0.61 -19.90 16 19 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.17 -4.30 8.70 -38.88 -0.34 -4.64 16 24 C -0.08 -1.91 9.30 -39.66 -0.37 -2.28 16 25 C -0.18 -2.90 8.91 -38.99 -0.35 -3.24 16 26 H 0.22 1.60 7.80 -54.09 -0.42 1.18 16 27 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.13 2.05 4.31 -52.49 -0.23 1.82 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.72 6.19 -51.93 -0.32 0.40 16 32 H 0.06 0.74 7.89 -51.93 -0.41 0.33 16 33 H 0.07 1.04 6.14 -51.93 -0.32 0.72 16 34 H 0.06 0.96 7.83 -51.93 -0.41 0.56 16 35 H 0.08 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 38 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 39 H 0.09 1.83 5.75 -52.49 -0.30 1.52 16 40 H 0.12 1.79 6.13 -52.49 -0.32 1.46 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -28.69 339.86 -9.61 -38.30 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.72 Total: 8.84 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: -5.05 Total: -35.39 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.07 Total: -30.45 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.69 -9.61 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784148046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.242 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds