Wall clock time and date at job start Tue Mar 31 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39598 * 120.10506 * 206.07394 * 3 2 1 5 5 C 1.38002 * 120.00936 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.21676 * 359.79297 * 5 4 3 7 7 C 1.38979 * 120.20977 * 0.46465 * 6 5 4 8 8 N 1.39697 * 119.99974 * 179.79032 * 7 6 5 9 9 C 1.46509 * 119.99983 * 179.72328 * 8 7 6 10 10 C 1.46499 * 120.00213 * 359.72001 * 8 7 6 11 11 C 1.50703 * 109.46900 * 90.00286 * 10 8 7 12 12 C 1.38635 * 119.74907 * 90.00058 * 11 10 8 13 13 C 1.37622 * 120.24668 * 179.69950 * 12 11 10 14 14 C 1.40718 * 119.74225 * 0.28236 * 13 12 11 15 15 C 1.41403 * 120.24139 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99744 * 24.37555 * 15 14 13 17 17 C 1.39941 * 120.00009 * 204.37485 * 15 14 13 18 18 N 1.30826 * 119.99936 * 17.84547 * 17 15 14 19 19 Si 1.86794 * 120.00203 * 197.84149 * 17 15 14 20 20 H 1.48503 * 109.47022 * 60.00288 * 19 17 15 21 21 H 1.48503 * 109.47309 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46979 * 300.00013 * 19 17 15 23 23 C 1.40715 * 119.51379 * 359.97438 * 14 13 12 24 24 C 1.37609 * 119.74619 * 0.02562 * 23 14 13 25 25 C 1.38677 * 119.99766 * 359.51297 * 7 6 5 26 26 H 4.52049 * 14.03082 * 0.02562 * 4 2 1 27 27 H 1.08006 * 119.99573 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.88976 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.88857 * 180.23102 * 6 5 4 30 30 H 1.08995 * 109.46751 * 270.00107 * 9 8 7 31 31 H 1.09005 * 109.46714 * 29.99845 * 9 8 7 32 32 H 1.08999 * 109.47049 * 149.99927 * 9 8 7 33 33 H 1.08995 * 109.46857 * 330.00218 * 10 8 7 34 34 H 1.09003 * 109.47219 * 210.00115 * 10 8 7 35 35 H 1.07993 * 119.87433 * 359.97438 * 12 11 10 36 36 H 1.07989 * 120.12702 * 180.29616 * 13 12 11 37 37 H 0.96996 * 120.00202 * 180.02562 * 18 17 15 38 38 H 1.08006 * 120.12439 * 180.02562 * 23 14 13 39 39 H 1.08000 * 119.87771 * 180.02562 * 24 23 14 40 40 H 1.07994 * 120.11371 * 180.23288 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3057 1.0857 0.5308 5 6 4.6857 1.0840 0.5303 6 6 5.3799 0.0082 0.0091 7 6 4.6925 -1.0745 -0.5265 8 7 5.3985 -2.1574 -1.0560 9 6 4.6738 -3.3014 -1.6151 10 6 6.8634 -2.1492 -1.0523 11 6 7.3660 -2.7704 0.2254 12 6 7.6028 -4.1353 0.2801 13 6 8.0677 -4.7123 1.4398 14 6 8.2969 -3.9122 2.5745 15 6 8.7750 -4.4940 3.7713 16 1 9.3281 -5.4210 3.7377 17 6 8.5314 -3.8687 4.9993 18 7 7.5917 -2.9637 5.0974 19 14 9.5478 -4.3260 6.4982 20 1 10.9807 -4.0433 6.2297 21 1 9.0954 -3.5273 7.6656 22 1 9.3748 -5.7715 6.7913 23 6 8.0479 -2.5289 2.5090 24 6 7.5832 -1.9734 1.3389 25 6 3.3058 -1.0822 -0.5301 26 1 -1.0500 -0.0011 0.0000 27 1 2.7669 1.9267 0.9420 28 1 5.2251 1.9243 0.9418 29 1 6.4599 0.0108 0.0148 30 1 4.4943 -4.0364 -0.8305 31 1 3.7205 -2.9639 -2.0220 32 1 5.2675 -3.7549 -2.4088 33 1 7.2211 -1.1219 -1.1222 34 1 7.2322 -2.7210 -1.9039 35 1 7.4261 -4.7472 -0.5920 36 1 8.2561 -5.7749 1.4787 37 1 7.4230 -2.5300 5.9485 38 1 8.2207 -1.9054 3.3739 39 1 7.3918 -0.9118 1.2862 40 1 2.7697 -1.9242 -0.9424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784148046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:57 Heat of formation + Delta-G solvation = 93.047098 kcal Electronic energy + Delta-G solvation = -21665.387517 eV Core-core repulsion = 18603.575301 eV Total energy + Delta-G solvation = -3061.812216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71649 -39.37656 -37.34799 -35.52071 -34.45839 -32.65464 -31.28418 -31.09728 -30.51779 -29.04009 -26.78303 -25.10795 -23.97047 -22.87959 -22.27340 -21.54123 -19.52247 -19.22838 -17.88983 -17.17451 -16.76953 -16.53114 -16.33925 -15.70352 -15.63037 -15.15850 -15.02155 -14.72948 -14.53189 -14.19601 -13.85607 -13.77428 -13.46107 -13.04759 -12.92105 -12.79301 -12.65591 -12.52808 -12.44227 -12.16665 -12.09121 -11.96225 -11.55585 -11.40513 -11.19706 -10.98485 -10.57867 -9.51798 -9.33780 -9.23066 -8.64599 -8.13127 -6.34489 0.09464 0.67741 0.93740 1.16909 1.35694 1.46652 1.50495 1.80891 2.16237 2.18954 2.37046 2.80010 3.15607 3.43052 3.76422 4.01051 4.07895 4.25601 4.35425 4.35855 4.46754 4.52903 4.57988 4.64510 4.75244 4.77387 4.83558 4.89844 4.93695 5.05681 5.14471 5.25461 5.35216 5.37921 5.47731 5.55826 5.66416 5.71387 5.94340 5.97954 6.10662 6.22740 6.39737 6.45002 6.61319 6.64536 6.71674 6.94080 7.04896 8.31887 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.004028 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.887787 B = 6948.846823 C = 7793.766500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.196 4.196 3 C 0.033 3.967 4 C -0.171 4.171 5 C -0.074 4.074 6 C -0.200 4.200 7 C 0.215 3.785 8 N -0.625 5.625 9 C 0.092 3.908 10 C 0.187 3.813 11 C -0.222 4.222 12 C -0.075 4.075 13 C -0.248 4.248 14 C 0.081 3.919 15 C -0.505 4.505 16 H 0.073 0.927 17 C 0.036 3.964 18 N -0.826 5.826 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.194 4.194 24 C -0.089 4.089 25 C -0.194 4.194 26 H 0.264 0.736 27 H 0.133 0.867 28 H 0.145 0.855 29 H 0.128 0.872 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.287 0.713 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.951 5.706 -10.246 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.196 4.196 3 C 0.033 3.967 4 C -0.191 4.191 5 C -0.092 4.092 6 C -0.222 4.222 7 C 0.112 3.888 8 N -0.334 5.334 9 C -0.051 4.051 10 C 0.065 3.935 11 C -0.225 4.225 12 C -0.094 4.094 13 C -0.268 4.268 14 C 0.078 3.922 15 C -0.534 4.534 16 H 0.092 0.908 17 C -0.179 4.179 18 N -0.452 5.452 19 Si 0.801 3.199 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.213 4.213 24 C -0.107 4.107 25 C -0.217 4.217 26 H 0.280 0.720 27 H 0.151 0.849 28 H 0.163 0.837 29 H 0.146 0.854 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.969 5.678 -10.198 14.133 hybrid contribution 0.313 -0.445 1.169 1.289 sum -7.655 5.233 -9.030 12.943 Atomic orbital electron populations 1.25779 0.96416 0.97501 0.97299 1.20511 0.92721 1.03095 1.03240 1.15914 0.87127 0.94888 0.98792 1.21087 0.94291 0.98903 1.04813 1.21072 0.93809 0.97840 0.96521 1.21083 1.00424 0.94983 1.05738 1.17865 0.90882 0.87950 0.92118 1.46831 1.05036 1.17466 1.64076 1.21706 0.97703 0.87718 0.97927 1.20148 0.78283 1.00779 0.94311 1.19885 1.11607 0.93959 0.97001 1.20674 0.97866 0.94357 0.96485 1.21161 1.11884 0.97944 0.95771 1.17968 0.89015 0.92251 0.92924 1.19836 1.33068 1.08683 0.91858 0.90842 1.26755 0.94308 0.93389 1.03474 1.69892 1.24889 1.22005 1.28380 0.85279 0.79179 0.79467 0.75943 1.18371 1.19185 1.18397 1.21266 1.07521 0.95134 0.97392 1.20868 0.98457 0.98367 0.93033 1.20741 0.92099 1.00345 1.08469 0.72035 0.84898 0.83703 0.85426 0.95083 0.90582 0.89434 0.90340 0.88874 0.86474 0.88929 0.90246 0.88646 0.87660 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 19.25 74.32 1.43 -1.68 16 2 C -0.20 -5.37 13.24 30.02 0.40 -4.97 16 3 C 0.03 1.03 5.72 -21.42 -0.12 0.91 16 4 C -0.17 -4.90 9.75 22.54 0.22 -4.68 16 5 C -0.07 -2.10 10.02 22.21 0.22 -1.88 16 6 C -0.20 -6.32 8.44 22.45 0.19 -6.13 16 7 C 0.22 6.99 6.55 38.17 0.25 7.24 16 8 N -0.63 -19.05 2.99 -726.68 -2.17 -21.22 16 9 C 0.09 2.31 10.23 127.77 1.31 3.61 16 10 C 0.19 5.72 5.39 85.63 0.46 6.18 16 11 C -0.22 -8.94 5.49 -19.67 -0.11 -9.05 16 12 C -0.08 -3.17 9.67 22.22 0.21 -2.95 16 13 C -0.25 -12.27 9.80 22.73 0.22 -12.05 16 14 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 15 C -0.50 -28.01 9.05 23.46 0.21 -27.80 16 16 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 17 C 0.04 1.84 5.14 85.26 0.44 2.28 16 18 N -0.83 -44.72 10.95 21.83 0.24 -44.48 16 19 Si 0.98 39.13 29.59 68.60 2.03 41.16 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.19 -10.38 8.70 22.73 0.20 -10.18 16 24 C -0.09 -4.05 9.30 22.22 0.21 -3.85 16 25 C -0.19 -6.09 8.91 22.66 0.20 -5.89 16 26 H 0.26 2.53 7.80 -4.42 -0.03 2.49 16 27 H 0.13 3.24 8.06 -2.91 -0.02 3.21 16 28 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 29 H 0.13 3.95 4.31 -2.91 -0.01 3.94 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.66 6.19 -2.38 -0.01 1.64 16 32 H 0.09 1.75 7.89 -2.39 -0.02 1.73 16 33 H 0.08 2.25 6.14 -2.39 -0.01 2.24 16 34 H 0.09 2.38 7.83 -2.39 -0.02 2.36 16 35 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 36 H 0.09 4.38 8.06 -2.92 -0.02 4.36 16 37 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 38 H 0.10 5.42 6.16 -2.91 -0.02 5.40 16 39 H 0.11 4.36 5.75 -2.91 -0.02 4.34 16 40 H 0.13 3.68 6.13 -2.91 -0.02 3.66 16 Total: -1.00 -65.26 339.86 6.97 -58.29 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 1.05 Total: 32.80 kcal Atomic # 6 Polarization: -72.38 SS G_CDS: 5.82 Total: -66.55 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -1.93 Total: -65.70 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -65.26 6.97 -58.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784148046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.338 kcal (2) G-P(sol) polarization free energy of solvation -65.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds