Wall clock time and date at job start Tue Mar 31 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.46970 * 2 1 4 4 C 1.34228 * 116.99471 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00634 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99654 * 180.02562 * 4 3 2 7 7 F 1.39900 * 109.47376 * 85.00249 * 6 4 3 8 8 F 1.39901 * 109.47203 * 325.00092 * 6 4 3 9 9 C 1.53002 * 109.47166 * 205.00464 * 6 4 3 10 10 H 1.09004 * 110.43540 * 303.91353 * 9 6 4 11 11 C 1.54887 * 110.48456 * 66.45275 * 9 6 4 12 12 C 1.54894 * 102.74610 * 156.62293 * 11 9 6 13 13 C 1.54271 * 104.19680 * 322.05530 * 12 11 9 14 14 H 1.09001 * 110.03169 * 264.27883 * 13 12 11 15 15 N 1.46902 * 110.03285 * 142.89159 * 13 12 11 16 16 C 1.46906 * 110.99573 * 86.45674 * 15 13 12 17 17 C 1.50699 * 109.46990 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99734 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00116 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47244 * 60.00135 * 21 19 17 23 23 H 1.48506 * 109.47128 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47486 * 299.99779 * 21 19 17 25 25 C 1.53880 * 106.59458 * 23.61395 * 13 12 11 26 26 H 1.09004 * 109.46920 * 299.99714 * 1 2 3 27 27 H 1.08996 * 109.47115 * 59.99300 * 1 2 3 28 28 H 1.08990 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47229 * 240.00470 * 2 1 3 30 30 H 1.08999 * 109.47238 * 120.00177 * 2 1 3 31 31 H 1.08993 * 110.75934 * 38.31384 * 11 9 6 32 32 H 1.09005 * 110.75608 * 274.93265 * 11 9 6 33 33 H 1.08997 * 110.48548 * 203.38193 * 12 11 9 34 34 H 1.08998 * 110.48737 * 80.73634 * 12 11 9 35 35 H 1.00896 * 111.00219 * 210.41313 * 15 13 12 36 36 H 1.09002 * 109.46991 * 299.99841 * 16 15 13 37 37 H 1.09000 * 109.47202 * 60.00133 * 16 15 13 38 38 H 0.96998 * 120.00296 * 180.02562 * 20 19 17 39 39 H 1.08996 * 110.03353 * 119.28559 * 25 13 12 40 40 H 1.09002 * 110.02938 * 240.71521 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 9 3.9924 3.4119 1.3153 8 9 3.1008 3.7815 -0.7554 9 6 5.3239 2.9092 -0.6081 10 1 5.9576 2.2027 -0.0718 11 6 5.2549 2.5425 -2.1113 12 6 6.5716 3.1379 -2.6691 13 6 6.7417 4.4651 -1.9014 14 1 6.3429 5.2910 -2.4905 15 7 8.1620 4.6975 -1.6067 16 6 8.8277 5.3768 -2.7263 17 6 10.2797 5.5970 -2.3885 18 1 10.6691 5.2652 -1.4373 19 6 11.1109 6.2222 -3.2936 20 7 10.6368 6.6258 -4.4520 21 14 12.9106 6.4958 -2.8745 22 1 13.5666 5.1862 -2.6301 23 1 13.5836 7.1824 -4.0063 24 1 13.0126 7.3359 -1.6542 25 6 5.9485 4.3196 -0.5909 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.3900 3.0084 -2.5833 32 1 5.2332 1.4608 -2.2445 33 1 6.4824 3.3250 -3.7392 34 1 7.4085 2.4697 -2.4662 35 1 8.2730 5.2187 -0.7500 36 1 8.7529 4.7598 -3.6218 37 1 8.3462 6.3380 -2.9061 38 1 11.2216 7.0653 -5.0889 39 1 6.6173 4.4215 0.2637 40 1 5.1639 5.0748 -0.5436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787298539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:24 Heat of formation + Delta-G solvation = -193.907554 kcal Electronic energy + Delta-G solvation = -23822.865339 eV Core-core repulsion = 19887.071386 eV Total energy + Delta-G solvation = -3935.793953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.48775 -47.46389 -40.92699 -38.43201 -37.18824 -34.28486 -32.34419 -32.15736 -29.94470 -28.53625 -26.74792 -25.01172 -23.55619 -22.05997 -21.63516 -20.30833 -19.74399 -18.88692 -17.94825 -17.77930 -16.78021 -16.70853 -16.34678 -15.20479 -14.94620 -14.67322 -14.47723 -14.30987 -14.17162 -13.96423 -13.73851 -13.43810 -13.28449 -13.15547 -12.75483 -12.46166 -12.31607 -12.07574 -11.69020 -11.47397 -11.29441 -11.25053 -11.03724 -10.87421 -10.77269 -10.74043 -10.63431 -10.58210 -10.27275 -9.83937 -9.15769 -8.47296 -7.31361 -6.02446 -4.04426 1.36854 1.71390 3.34340 3.38112 3.38240 3.41300 3.56488 4.04452 4.17508 4.43606 4.47179 4.48936 4.70806 4.78504 4.80159 5.02425 5.15806 5.32349 5.33484 5.40152 5.48867 5.51572 5.56403 5.66374 5.76662 5.83078 5.89489 6.08642 6.19122 6.27414 6.49894 6.68321 6.98354 7.29182 7.42565 7.79651 8.14287 8.39505 8.61960 9.04745 9.60469 11.08628 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.042124 B = 0.002878 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.548636 B = 9726.511214 C = 9817.374315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.342 6.342 4 C 0.436 3.564 5 O -0.460 6.460 6 C 0.323 3.677 7 F -0.173 7.173 8 F -0.173 7.173 9 C -0.120 4.120 10 H 0.121 0.879 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.084 3.916 14 H 0.043 0.957 15 N -0.683 5.683 16 C 0.194 3.806 17 C -0.515 4.515 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.117 4.117 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.329 0.671 36 H 0.029 0.971 37 H -0.014 1.014 38 H 0.262 0.738 39 H 0.083 0.917 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.431 -11.492 8.604 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.258 6.258 4 C 0.274 3.726 5 O -0.345 6.345 6 C 0.286 3.714 7 F -0.154 7.154 8 F -0.153 7.153 9 C -0.139 4.139 10 H 0.139 0.861 11 C -0.160 4.160 12 C -0.144 4.144 13 C -0.027 4.027 14 H 0.061 0.939 15 N -0.315 5.315 16 C 0.067 3.933 17 C -0.554 4.554 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.155 4.155 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.047 0.953 37 H 0.004 0.996 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.999 -12.313 8.238 24.889 hybrid contribution 0.480 1.081 0.318 1.224 sum -19.519 -11.232 8.556 24.091 Atomic orbital electron populations 1.21825 0.92033 1.03271 1.03903 1.23231 0.95904 0.79232 1.03175 1.86591 1.22926 1.33486 1.82810 1.24006 0.82030 0.92166 0.74412 1.90744 1.60330 1.41150 1.42229 1.20853 0.92287 0.81862 0.76431 1.93109 1.96966 1.88803 1.36505 1.93087 1.74240 1.72520 1.75483 1.23054 0.89644 1.02090 0.99139 0.86133 1.22627 1.00210 1.01376 0.91747 1.22358 0.95793 0.96934 0.99301 1.22053 0.90168 0.96872 0.93568 0.93878 1.60860 1.08774 1.54504 1.07338 1.19590 0.93309 0.91367 0.89016 1.21158 0.94103 1.37414 1.02682 0.92025 1.24991 0.98960 0.95647 0.94994 1.69951 1.35946 1.40350 1.07523 0.86543 0.84644 0.78371 0.77721 1.20164 1.21373 1.20275 1.22401 0.99738 0.93323 1.00008 0.91259 0.91150 0.89840 0.90537 0.90678 0.90775 0.90706 0.91499 0.89818 0.85311 0.95329 0.99606 0.92866 0.89830 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.29 37.16 0.38 -0.42 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.34 -3.72 10.05 -39.25 -0.39 -4.11 16 4 C 0.44 5.33 6.91 36.01 0.25 5.58 16 5 O -0.46 -6.18 15.51 -18.75 -0.29 -6.47 16 6 C 0.32 4.05 1.66 -27.88 -0.05 4.00 16 7 F -0.17 -2.22 16.78 2.25 0.04 -2.19 16 8 F -0.17 -2.22 15.39 2.25 0.03 -2.18 16 9 C -0.12 -1.56 2.18 -88.96 -0.19 -1.75 16 10 H 0.12 1.57 7.77 -51.93 -0.40 1.17 16 11 C -0.12 -1.58 5.74 -24.74 -0.14 -1.72 16 12 C -0.11 -1.67 6.43 -25.07 -0.16 -1.83 16 13 C 0.08 1.45 3.24 -66.59 -0.22 1.24 16 14 H 0.04 0.79 7.83 -51.93 -0.41 0.39 16 15 N -0.68 -14.33 6.24 -106.80 -0.67 -14.99 16 16 C 0.19 5.04 5.26 -4.97 -0.03 5.02 16 17 C -0.51 -14.58 9.32 -34.44 -0.32 -14.90 16 18 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 21 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.12 -1.65 5.74 -25.61 -0.15 -1.80 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.56 8.13 -51.93 -0.42 0.13 16 30 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 32 H 0.07 0.92 7.96 -51.93 -0.41 0.50 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 35 H 0.33 6.58 8.04 -39.29 -0.32 6.27 16 36 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 37 H -0.01 -0.38 8.07 -51.93 -0.42 -0.80 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.08 1.16 7.49 -51.93 -0.39 0.77 16 40 H 0.07 0.94 7.40 -51.93 -0.38 0.56 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -30.79 339.53 -6.97 -37.76 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.03 Total: 0.92 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.49 Total: -4.42 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.07 Total: -41.16 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.69 Total: -10.58 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.07 Total: -4.37 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.79 -6.97 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787298539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.152 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds