Wall clock time and date at job start Tue Mar 31 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.46970 * 2 1 4 4 C 1.34228 * 116.99471 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00634 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99654 * 180.02562 * 4 3 2 7 7 F 1.39900 * 109.47376 * 85.00249 * 6 4 3 8 8 F 1.39901 * 109.47203 * 325.00092 * 6 4 3 9 9 C 1.53002 * 109.47166 * 205.00464 * 6 4 3 10 10 H 1.09004 * 110.43540 * 303.91353 * 9 6 4 11 11 C 1.54887 * 110.48456 * 66.45275 * 9 6 4 12 12 C 1.54894 * 102.74610 * 156.62293 * 11 9 6 13 13 C 1.54271 * 104.19680 * 322.05530 * 12 11 9 14 14 H 1.09001 * 110.03169 * 264.27883 * 13 12 11 15 15 N 1.46902 * 110.03285 * 142.89159 * 13 12 11 16 16 C 1.46906 * 110.99573 * 86.45674 * 15 13 12 17 17 C 1.50699 * 109.46990 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99734 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00116 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47244 * 60.00135 * 21 19 17 23 23 H 1.48506 * 109.47128 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47486 * 299.99779 * 21 19 17 25 25 C 1.53880 * 106.59458 * 23.61395 * 13 12 11 26 26 H 1.09004 * 109.46920 * 299.99714 * 1 2 3 27 27 H 1.08996 * 109.47115 * 59.99300 * 1 2 3 28 28 H 1.08990 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47229 * 240.00470 * 2 1 3 30 30 H 1.08999 * 109.47238 * 120.00177 * 2 1 3 31 31 H 1.08993 * 110.75934 * 38.31384 * 11 9 6 32 32 H 1.09005 * 110.75608 * 274.93265 * 11 9 6 33 33 H 1.08997 * 110.48548 * 203.38193 * 12 11 9 34 34 H 1.08998 * 110.48737 * 80.73634 * 12 11 9 35 35 H 1.00896 * 111.00219 * 210.41313 * 15 13 12 36 36 H 1.09002 * 109.46991 * 299.99841 * 16 15 13 37 37 H 1.09000 * 109.47202 * 60.00133 * 16 15 13 38 38 H 0.96998 * 120.00296 * 180.02562 * 20 19 17 39 39 H 1.08996 * 110.03353 * 119.28559 * 25 13 12 40 40 H 1.09002 * 110.02938 * 240.71521 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 9 3.9924 3.4119 1.3153 8 9 3.1008 3.7815 -0.7554 9 6 5.3239 2.9092 -0.6081 10 1 5.9576 2.2027 -0.0718 11 6 5.2549 2.5425 -2.1113 12 6 6.5716 3.1379 -2.6691 13 6 6.7417 4.4651 -1.9014 14 1 6.3429 5.2910 -2.4905 15 7 8.1620 4.6975 -1.6067 16 6 8.8277 5.3768 -2.7263 17 6 10.2797 5.5970 -2.3885 18 1 10.6691 5.2652 -1.4373 19 6 11.1109 6.2222 -3.2936 20 7 10.6368 6.6258 -4.4520 21 14 12.9106 6.4958 -2.8745 22 1 13.5666 5.1862 -2.6301 23 1 13.5836 7.1824 -4.0063 24 1 13.0126 7.3359 -1.6542 25 6 5.9485 4.3196 -0.5909 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.3900 3.0084 -2.5833 32 1 5.2332 1.4608 -2.2445 33 1 6.4824 3.3250 -3.7392 34 1 7.4085 2.4697 -2.4662 35 1 8.2730 5.2187 -0.7500 36 1 8.7529 4.7598 -3.6218 37 1 8.3462 6.3380 -2.9061 38 1 11.2216 7.0653 -5.0889 39 1 6.6173 4.4215 0.2637 40 1 5.1639 5.0748 -0.5436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787298539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:23 Heat of formation + Delta-G solvation = -212.264478 kcal Electronic energy + Delta-G solvation = -23823.661355 eV Core-core repulsion = 19887.071386 eV Total energy + Delta-G solvation = -3936.589969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.49300 -48.46931 -41.82573 -39.69632 -38.11397 -36.05618 -34.20929 -32.82717 -31.18849 -29.94261 -28.25698 -26.52335 -24.27450 -23.74319 -22.84375 -21.39987 -21.08973 -19.86994 -18.95677 -18.73347 -18.46747 -17.75548 -17.54926 -16.73418 -16.43319 -15.86720 -15.80069 -15.50022 -15.28213 -15.07801 -14.81609 -14.53284 -14.38775 -14.21388 -14.00670 -13.71764 -13.50459 -13.18335 -13.08602 -12.69073 -12.61513 -12.52223 -12.40424 -12.33438 -12.23290 -11.93192 -11.79419 -11.74439 -11.67127 -11.60394 -11.23269 -10.64489 -9.11577 -8.21551 -6.32563 0.42901 0.84640 1.41881 1.45365 1.53260 2.40603 2.41309 2.58828 3.02323 3.11846 3.21443 3.54489 3.57446 3.66244 3.95227 3.96105 4.19968 4.27275 4.31197 4.36045 4.44739 4.51469 4.64444 4.71499 4.78719 4.88447 4.94121 4.95916 5.02154 5.14807 5.18707 5.25873 5.31084 5.36440 5.64863 6.05046 6.10637 6.46962 6.75269 6.91408 7.38394 8.89848 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.042124 B = 0.002878 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.548636 B = 9726.511214 C = 9817.374315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.347 6.347 4 C 0.441 3.559 5 O -0.475 6.475 6 C 0.326 3.674 7 F -0.174 7.174 8 F -0.174 7.174 9 C -0.116 4.116 10 H 0.123 0.877 11 C -0.109 4.109 12 C -0.105 4.105 13 C 0.078 3.922 14 H 0.030 0.970 15 N -0.680 5.680 16 C 0.210 3.790 17 C -0.536 4.536 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.266 1.266 25 C -0.109 4.109 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.336 0.664 36 H 0.001 0.999 37 H -0.041 1.041 38 H 0.265 0.735 39 H 0.089 0.911 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.928 -12.346 9.754 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.263 6.263 4 C 0.279 3.721 5 O -0.361 6.361 6 C 0.288 3.712 7 F -0.155 7.155 8 F -0.155 7.155 9 C -0.135 4.135 10 H 0.142 0.858 11 C -0.147 4.147 12 C -0.143 4.143 13 C -0.032 4.032 14 H 0.048 0.952 15 N -0.311 5.311 16 C 0.082 3.918 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.797 3.203 22 H -0.194 1.194 23 H -0.209 1.209 24 H -0.191 1.191 25 C -0.146 4.146 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.020 0.980 37 H -0.024 1.024 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.530 -13.178 9.408 26.146 hybrid contribution 0.541 1.316 -0.047 1.423 sum -19.989 -11.862 9.361 25.058 Atomic orbital electron populations 1.21866 0.90063 1.04783 1.03853 1.23592 0.97454 0.77758 1.03679 1.86589 1.21948 1.35489 1.82271 1.23806 0.82507 0.91614 0.74148 1.90740 1.60747 1.41452 1.43145 1.20732 0.91868 0.82295 0.76257 1.93108 1.96957 1.88882 1.36566 1.93087 1.74246 1.72627 1.75509 1.22970 0.90196 1.01151 0.99202 0.85846 1.22537 0.98678 1.01962 0.91542 1.22288 0.97082 0.95997 0.98946 1.22174 0.88296 0.97138 0.95581 0.95203 1.60757 1.11086 1.53341 1.05965 1.19211 0.93100 0.89765 0.89695 1.21542 0.95280 1.37640 1.02968 0.91684 1.25957 1.03984 0.95124 0.94723 1.70085 1.37794 1.40983 1.08600 0.85389 0.78489 0.78605 0.77826 1.19351 1.20885 1.19078 1.22284 0.99672 0.94583 0.98099 0.91240 0.91247 0.87517 0.90091 0.90190 0.89762 0.89541 0.92153 0.91149 0.84614 0.98044 1.02357 0.92647 0.89274 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 71.98 0.74 -0.49 16 2 C 0.05 0.65 6.19 71.98 0.45 1.09 16 3 O -0.35 -6.96 10.05 -51.40 -0.52 -7.48 16 4 C 0.44 10.05 6.91 71.24 0.49 10.54 16 5 O -0.47 -11.99 15.51 21.98 0.34 -11.65 16 6 C 0.33 7.62 1.66 29.85 0.05 7.67 16 7 F -0.17 -4.19 16.78 44.97 0.75 -3.43 16 8 F -0.17 -4.17 15.39 44.97 0.69 -3.48 16 9 C -0.12 -2.85 2.18 -9.72 -0.02 -2.87 16 10 H 0.12 3.02 7.77 -2.39 -0.02 3.00 16 11 C -0.11 -2.70 5.74 31.89 0.18 -2.52 16 12 C -0.10 -3.33 6.43 31.67 0.20 -3.13 16 13 C 0.08 2.73 3.24 45.64 0.15 2.87 16 14 H 0.03 1.13 7.83 -2.39 -0.02 1.11 16 15 N -0.68 -28.93 6.24 -491.80 -3.07 -32.00 16 16 C 0.21 11.30 5.26 85.56 0.45 11.75 16 17 C -0.54 -30.70 9.32 25.60 0.24 -30.47 16 18 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 21 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 C -0.11 -2.96 5.74 31.32 0.18 -2.78 16 26 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 1.03 8.13 -2.39 -0.02 1.01 16 30 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.08 1.93 7.31 -2.39 -0.02 1.91 16 32 H 0.09 1.97 7.96 -2.38 -0.02 1.95 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 35 H 0.34 13.45 8.04 -89.70 -0.72 12.73 16 36 H 0.00 0.08 8.10 -2.39 -0.02 0.06 16 37 H -0.04 -2.39 8.07 -2.39 -0.02 -2.41 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.09 2.35 7.49 -2.39 -0.02 2.34 16 40 H 0.08 2.04 7.40 -2.39 -0.02 2.02 16 Total: -1.00 -65.86 339.53 4.41 -61.46 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.32 Total: 14.49 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 3.57 Total: -7.84 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -2.79 Total: -88.58 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.18 Total: -19.13 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 1.45 Total: -6.91 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.86 4.41 -61.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787298539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.807 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds