Wall clock time and date at job start Tue Mar 31 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21292 * 119.99456 * 2 1 4 4 N 1.34778 * 120.00351 * 179.97438 * 2 1 3 5 5 C 1.39928 * 119.99713 * 184.48907 * 4 2 1 6 6 C 1.38892 * 120.07255 * 325.30313 * 5 4 2 7 7 C 1.38092 * 119.92336 * 180.32086 * 6 5 4 8 8 C 1.38301 * 120.07254 * 359.68094 * 7 6 5 9 9 C 1.38262 * 120.14284 * 0.02562 * 8 7 6 10 10 C 1.38128 * 120.06794 * 0.03778 * 9 8 7 11 11 C 1.50703 * 120.03245 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47104 * 260.00037 * 11 10 9 13 13 C 1.34772 * 120.00530 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99501 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00652 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00108 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47224 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00342 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00373 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46788 * 89.99964 * 21 19 17 23 23 H 1.48501 * 109.47232 * 210.00493 * 21 19 17 24 24 H 1.48507 * 109.46632 * 330.00060 * 21 19 17 25 25 H 1.08998 * 109.47071 * 239.99574 * 1 2 3 26 26 H 1.08998 * 109.47602 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46912 * 120.00151 * 1 2 3 28 28 H 0.97002 * 119.99554 * 4.48966 * 4 2 1 29 29 H 1.07995 * 120.03499 * 0.02562 * 6 5 4 30 30 H 1.07998 * 119.95931 * 179.70209 * 7 6 5 31 31 H 1.07999 * 119.92734 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.96096 * 180.02562 * 9 8 7 33 33 H 1.08998 * 109.47131 * 140.00115 * 11 10 9 34 34 H 1.08998 * 109.47093 * 20.00017 * 11 10 9 35 35 H 0.97007 * 119.99981 * 0.02562 * 12 11 10 36 36 H 0.97002 * 119.99352 * 359.97438 * 15 13 12 37 37 H 1.08999 * 109.47377 * 299.99746 * 16 15 13 38 38 H 1.08999 * 109.47576 * 60.00086 * 16 15 13 39 39 H 0.97004 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5770 -1.1688 0.0954 6 6 4.3163 -0.1557 -0.5013 7 6 5.6943 -0.1640 -0.4114 8 6 6.3378 -1.1760 0.2774 9 6 5.6043 -2.1826 0.8776 10 6 4.2258 -2.1808 0.7903 11 6 3.4272 -3.2788 1.4444 12 7 3.0369 -4.2664 0.4351 13 6 2.3108 -5.3441 0.7923 14 8 1.9801 -5.4970 1.9523 15 7 1.9522 -6.2530 -0.1361 16 6 1.1634 -7.4248 0.2524 17 6 0.8986 -8.2771 -0.9620 18 1 1.2801 -7.9762 -1.9265 19 6 0.1702 -9.4415 -0.8414 20 7 -0.2939 -9.8082 0.3333 21 14 -0.1586 -10.4976 -2.3467 22 1 0.9344 -11.4906 -2.5030 23 1 -1.4524 -11.2075 -2.1804 24 1 -0.2194 -9.6341 -3.5534 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6981 -2.0060 -0.0649 29 1 3.8143 0.6350 -1.0390 30 1 6.2700 0.6209 -0.8793 31 1 7.4156 -1.1799 0.3466 32 1 6.1098 -2.9712 1.4152 33 1 2.5336 -2.8547 1.9023 34 1 4.0335 -3.7622 2.2103 35 1 3.3011 -4.1446 -0.4903 36 1 2.2164 -6.1311 -1.0614 37 1 1.7159 -8.0063 0.9904 38 1 0.2160 -7.0990 0.6817 39 1 -0.8067 -10.6272 0.4180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787366314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:46 Heat of formation + Delta-G solvation = -45.503913 kcal Electronic energy + Delta-G solvation = -22360.039756 eV Core-core repulsion = 18881.370254 eV Total energy + Delta-G solvation = -3478.669502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91518 -39.31273 -38.60804 -35.25084 -34.62750 -34.02023 -32.39088 -31.23185 -31.09584 -28.84388 -27.40335 -25.61959 -23.30731 -22.59771 -21.44389 -20.65719 -20.24553 -18.28287 -17.94823 -17.17858 -16.42702 -15.93305 -15.79117 -15.56581 -15.15031 -14.66616 -14.60754 -14.46130 -13.85250 -13.69964 -13.38829 -13.04850 -12.96434 -12.80744 -12.79526 -12.42383 -11.99434 -11.89202 -11.62275 -11.40052 -10.98166 -10.90492 -10.59433 -10.32876 -10.07866 -9.58078 -9.39912 -9.00201 -8.87217 -8.72272 -8.36284 -7.81196 -6.17877 -4.24644 0.97214 1.17890 2.30890 2.82452 3.22965 3.24380 3.30023 3.32930 3.73386 3.87535 4.31138 4.42390 4.52198 4.69875 4.89477 4.96015 5.05918 5.07763 5.13414 5.18349 5.24387 5.33091 5.54275 5.60384 5.72885 5.86308 6.06560 6.18368 6.32047 6.34794 6.72049 6.81418 7.05128 7.10817 7.46455 7.51357 7.53735 7.80785 7.86395 8.00646 8.72964 8.89031 9.28007 9.44441 10.92275 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.003233 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.999284 B = 8658.816860 C = 9281.139893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.530 6.530 4 N -0.673 5.673 5 C 0.160 3.840 6 C -0.125 4.125 7 C -0.098 4.098 8 C -0.137 4.137 9 C -0.082 4.082 10 C -0.129 4.129 11 C 0.182 3.818 12 N -0.758 5.758 13 C 0.692 3.308 14 O -0.599 6.599 15 N -0.728 5.728 16 C 0.267 3.733 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.416 0.584 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.392 0.608 36 H 0.386 0.614 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.261 19.059 -3.045 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.302 3.698 3 O -0.406 6.406 4 N -0.319 5.319 5 C 0.065 3.935 6 C -0.145 4.145 7 C -0.117 4.117 8 C -0.156 4.156 9 C -0.101 4.101 10 C -0.132 4.132 11 C 0.058 3.942 12 N -0.416 5.416 13 C 0.391 3.609 14 O -0.478 6.478 15 N -0.380 5.380 16 C 0.146 3.854 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.254 0.746 29 H 0.157 0.843 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.225 0.775 36 H 0.218 0.782 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.126 19.481 -1.830 21.187 hybrid contribution -0.171 -1.006 -1.602 1.900 sum 7.955 18.475 -3.432 20.405 Atomic orbital electron populations 1.21955 0.90476 1.05974 1.05117 1.21060 0.91043 0.82966 0.74736 1.90711 1.70582 1.31298 1.48006 1.43713 1.05244 1.10401 1.72516 1.17650 0.82592 0.96376 0.96848 1.21279 0.93816 0.99222 1.00167 1.21097 0.93962 0.98246 0.98408 1.21145 1.00046 0.95040 0.99363 1.20956 0.92325 0.98335 0.98494 1.19807 0.94477 0.97843 1.01046 1.19824 0.97896 0.86217 0.90270 1.45314 1.60137 1.24829 1.11326 1.16172 0.79179 0.79805 0.85725 1.90890 1.61137 1.77948 1.17801 1.45736 1.57668 1.25052 1.09555 1.18987 0.90084 0.80270 0.96083 1.21222 1.35472 1.07180 0.94212 0.91964 1.24943 0.95270 0.97405 0.96383 1.69982 1.35428 1.23924 1.22927 0.86418 0.77783 0.80288 0.82413 1.20477 1.21010 1.19784 0.88704 0.88506 0.88820 0.74640 0.84299 0.85734 0.85805 0.85274 0.91264 0.90667 0.77522 0.78154 0.95735 0.95704 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 10.32 36.00 0.37 -0.86 16 2 C 0.51 5.45 7.78 -10.99 -0.09 5.37 16 3 O -0.53 -7.36 14.50 5.55 0.08 -7.28 16 4 N -0.67 -6.89 4.83 -9.86 -0.05 -6.94 16 5 C 0.16 1.81 6.29 -83.69 -0.53 1.29 16 6 C -0.12 -1.41 8.70 -39.39 -0.34 -1.75 16 7 C -0.10 -0.94 10.04 -39.61 -0.40 -1.33 16 8 C -0.14 -1.23 10.04 -39.55 -0.40 -1.63 16 9 C -0.08 -0.81 9.66 -39.61 -0.38 -1.19 16 10 C -0.13 -1.41 5.26 -104.43 -0.55 -1.96 16 11 C 0.18 2.30 5.08 -5.19 -0.03 2.27 16 12 N -0.76 -10.41 5.33 -66.42 -0.35 -10.76 16 13 C 0.69 13.42 8.57 -86.92 -0.74 12.67 16 14 O -0.60 -14.33 16.34 5.29 0.09 -14.24 16 15 N -0.73 -14.82 5.55 -66.42 -0.37 -15.19 16 16 C 0.27 6.95 5.43 -5.20 -0.03 6.92 16 17 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 18 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 21 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 0.64 8.12 -51.93 -0.42 0.21 16 27 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.42 3.89 7.86 -40.82 -0.32 3.57 16 29 H 0.14 1.68 6.20 -52.49 -0.33 1.35 16 30 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 33 H 0.07 0.92 7.71 -51.93 -0.40 0.52 16 34 H 0.08 1.00 8.00 -51.93 -0.42 0.59 16 35 H 0.39 4.46 8.48 -40.82 -0.35 4.11 16 36 H 0.39 6.69 8.34 -40.82 -0.34 6.35 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -34.09 339.95 -8.35 -42.45 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.06 Total: 9.68 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -3.53 Total: 6.68 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.03 Total: -57.91 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.09 -8.35 -42.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.057 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds