Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21292 * 119.99456 * 2 1 4 4 N 1.34778 * 120.00351 * 179.97438 * 2 1 3 5 5 C 1.39928 * 119.99713 * 184.48907 * 4 2 1 6 6 C 1.38892 * 120.07255 * 325.30313 * 5 4 2 7 7 C 1.38092 * 119.92336 * 180.32086 * 6 5 4 8 8 C 1.38301 * 120.07254 * 359.68094 * 7 6 5 9 9 C 1.38262 * 120.14284 * 0.02562 * 8 7 6 10 10 C 1.38128 * 120.06794 * 0.03778 * 9 8 7 11 11 C 1.50703 * 120.03245 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47104 * 260.00037 * 11 10 9 13 13 C 1.34772 * 120.00530 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99501 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00652 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00108 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47224 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00342 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00373 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46788 * 89.99964 * 21 19 17 23 23 H 1.48501 * 109.47232 * 210.00493 * 21 19 17 24 24 H 1.48507 * 109.46632 * 330.00060 * 21 19 17 25 25 H 1.08998 * 109.47071 * 239.99574 * 1 2 3 26 26 H 1.08998 * 109.47602 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46912 * 120.00151 * 1 2 3 28 28 H 0.97002 * 119.99554 * 4.48966 * 4 2 1 29 29 H 1.07995 * 120.03499 * 0.02562 * 6 5 4 30 30 H 1.07998 * 119.95931 * 179.70209 * 7 6 5 31 31 H 1.07999 * 119.92734 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.96096 * 180.02562 * 9 8 7 33 33 H 1.08998 * 109.47131 * 140.00115 * 11 10 9 34 34 H 1.08998 * 109.47093 * 20.00017 * 11 10 9 35 35 H 0.97007 * 119.99981 * 0.02562 * 12 11 10 36 36 H 0.97002 * 119.99352 * 359.97438 * 15 13 12 37 37 H 1.08999 * 109.47377 * 299.99746 * 16 15 13 38 38 H 1.08999 * 109.47576 * 60.00086 * 16 15 13 39 39 H 0.97004 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5770 -1.1688 0.0954 6 6 4.3163 -0.1557 -0.5013 7 6 5.6943 -0.1640 -0.4114 8 6 6.3378 -1.1760 0.2774 9 6 5.6043 -2.1826 0.8776 10 6 4.2258 -2.1808 0.7903 11 6 3.4272 -3.2788 1.4444 12 7 3.0369 -4.2664 0.4351 13 6 2.3108 -5.3441 0.7923 14 8 1.9801 -5.4970 1.9523 15 7 1.9522 -6.2530 -0.1361 16 6 1.1634 -7.4248 0.2524 17 6 0.8986 -8.2771 -0.9620 18 1 1.2801 -7.9762 -1.9265 19 6 0.1702 -9.4415 -0.8414 20 7 -0.2939 -9.8082 0.3333 21 14 -0.1586 -10.4976 -2.3467 22 1 0.9344 -11.4906 -2.5030 23 1 -1.4524 -11.2075 -2.1804 24 1 -0.2194 -9.6341 -3.5534 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6981 -2.0060 -0.0649 29 1 3.8143 0.6350 -1.0390 30 1 6.2700 0.6209 -0.8793 31 1 7.4156 -1.1799 0.3466 32 1 6.1098 -2.9712 1.4152 33 1 2.5336 -2.8547 1.9023 34 1 4.0335 -3.7622 2.2103 35 1 3.3011 -4.1446 -0.4903 36 1 2.2164 -6.1311 -1.0614 37 1 1.7159 -8.0063 0.9904 38 1 0.2160 -7.0990 0.6817 39 1 -0.8067 -10.6272 0.4180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787366314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -70.836325 kcal Electronic energy + Delta-G solvation = -22361.138251 eV Core-core repulsion = 18881.370254 eV Total energy + Delta-G solvation = -3479.767998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79234 -40.77842 -39.56206 -36.43292 -35.96506 -35.54563 -34.32320 -32.29207 -31.83766 -29.67574 -29.13814 -26.85847 -24.50117 -24.10417 -22.36297 -21.86165 -21.47690 -19.85831 -18.84770 -18.06550 -17.99466 -17.41974 -16.81776 -16.68559 -16.45224 -16.31969 -15.68653 -15.41960 -15.11209 -14.93612 -14.59158 -14.35098 -14.05530 -13.92980 -13.75932 -13.51762 -13.42157 -13.10081 -12.87409 -12.70076 -12.53634 -12.22942 -12.20062 -11.44726 -11.43230 -11.29658 -10.93307 -10.77947 -10.30089 -9.85955 -9.58382 -9.18340 -8.25929 -6.41786 0.14827 0.37263 1.45748 1.47787 1.50208 1.58705 1.93281 2.05513 2.26187 2.41501 2.83591 3.09428 3.58701 3.60421 3.72268 3.86056 4.17574 4.32207 4.37758 4.48008 4.52095 4.57084 4.67799 4.71831 4.99885 5.05592 5.12120 5.29799 5.31612 5.38674 5.44135 5.51386 5.53178 5.57948 5.69797 5.88279 6.02723 6.24362 6.30987 6.70237 6.99868 7.27193 7.31823 7.73621 8.86185 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.003233 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.999284 B = 8658.816860 C = 9281.139893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.567 6.567 4 N -0.670 5.670 5 C 0.148 3.852 6 C -0.141 4.141 7 C -0.095 4.095 8 C -0.133 4.133 9 C -0.083 4.083 10 C -0.134 4.134 11 C 0.187 3.813 12 N -0.729 5.729 13 C 0.694 3.306 14 O -0.645 6.645 15 N -0.721 5.721 16 C 0.285 3.715 17 C -0.553 4.553 18 H 0.083 0.917 19 C 0.005 3.995 20 N -0.930 5.930 21 Si 0.983 3.017 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.255 1.255 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.420 0.580 29 H 0.127 0.873 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.408 0.592 36 H 0.404 0.596 37 H -0.015 1.015 38 H -0.011 1.011 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.398 19.451 -5.074 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.446 6.446 4 N -0.315 5.315 5 C 0.053 3.947 6 C -0.162 4.162 7 C -0.114 4.114 8 C -0.151 4.151 9 C -0.102 4.102 10 C -0.137 4.137 11 C 0.063 3.937 12 N -0.387 5.387 13 C 0.394 3.606 14 O -0.528 6.528 15 N -0.375 5.375 16 C 0.162 3.838 17 C -0.591 4.591 18 H 0.101 0.899 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.806 3.194 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.179 1.179 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.258 0.742 29 H 0.144 0.856 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.244 0.756 36 H 0.240 0.760 37 H 0.003 0.997 38 H 0.007 0.993 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.306 19.922 -3.913 22.333 hybrid contribution -0.442 -1.031 -0.923 1.453 sum 8.863 18.891 -4.836 21.420 Atomic orbital electron populations 1.21991 0.87673 1.06770 1.06455 1.21719 0.92391 0.82381 0.73657 1.90691 1.71585 1.32477 1.49849 1.43744 1.05100 1.10556 1.72105 1.17809 0.83075 0.96632 0.97178 1.21318 0.94794 0.99134 1.00907 1.21408 0.93379 0.98808 0.97803 1.21452 1.01437 0.94074 0.98177 1.21205 0.91853 0.98955 0.98216 1.19615 0.94871 0.97330 1.01915 1.19823 0.97828 0.86119 0.89903 1.45016 1.58101 1.23012 1.12549 1.16254 0.79195 0.80503 0.84673 1.90863 1.62929 1.79159 1.19840 1.45292 1.57438 1.24029 1.10705 1.18407 0.88493 0.81567 0.95334 1.21603 1.35331 1.07305 0.94868 0.89867 1.26020 0.94804 0.98961 0.99689 1.70141 1.36387 1.24673 1.25709 0.85182 0.77446 0.78248 0.78477 1.19803 1.21068 1.17911 0.87681 0.88050 0.86934 0.74242 0.85554 0.83551 0.83011 0.83933 0.91963 0.91116 0.75586 0.76036 0.99724 0.99309 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.32 71.24 0.74 -1.45 16 2 C 0.51 10.64 7.78 87.66 0.68 11.32 16 3 O -0.57 -15.92 14.50 -3.07 -0.04 -15.97 16 4 N -0.67 -13.37 4.83 -303.50 -1.47 -14.83 16 5 C 0.15 3.23 6.29 38.15 0.24 3.47 16 6 C -0.14 -3.07 8.70 22.39 0.19 -2.88 16 7 C -0.10 -1.61 10.04 22.25 0.22 -1.39 16 8 C -0.13 -2.00 10.04 22.29 0.22 -1.78 16 9 C -0.08 -1.45 9.66 22.25 0.22 -1.24 16 10 C -0.13 -2.78 5.26 -19.74 -0.10 -2.88 16 11 C 0.19 4.59 5.08 85.63 0.43 5.02 16 12 N -0.73 -19.30 5.33 -482.30 -2.57 -21.87 16 13 C 0.69 26.98 8.57 179.06 1.53 28.51 16 14 O -0.65 -31.71 16.34 -4.00 -0.07 -31.77 16 15 N -0.72 -29.32 5.55 -482.31 -2.68 -31.99 16 16 C 0.29 15.29 5.43 85.64 0.46 15.76 16 17 C -0.55 -29.30 9.28 25.60 0.24 -29.06 16 18 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 19 C 0.00 0.27 5.46 84.65 0.46 0.73 16 20 N -0.93 -55.22 13.29 21.45 0.28 -54.94 16 21 Si 0.98 41.42 29.54 68.60 2.03 43.45 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.23 8.12 -2.39 -0.02 1.21 16 27 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.42 7.53 7.86 -92.71 -0.73 6.80 16 29 H 0.13 3.07 6.20 -2.91 -0.02 3.05 16 30 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.14 2.08 8.04 -2.91 -0.02 2.06 16 33 H 0.06 1.64 7.71 -2.39 -0.02 1.63 16 34 H 0.07 1.84 8.00 -2.39 -0.02 1.82 16 35 H 0.41 8.50 8.48 -92.70 -0.79 7.71 16 36 H 0.40 13.43 8.34 -92.71 -0.77 12.65 16 37 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -75.92 339.95 -0.15 -76.07 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -1.18 Total: 27.73 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 5.54 Total: 24.13 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -6.43 Total: -123.64 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -0.11 Total: -47.74 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -75.92 -0.15 -76.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.237 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds