Wall clock time and date at job start Tue Mar 31 2020 06:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99827 * 2 1 4 4 O 1.21585 * 120.00168 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99814 * 180.02562 * 3 2 1 6 6 N 1.40100 * 119.99994 * 359.97438 * 5 3 2 7 7 C 1.34777 * 119.99919 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00194 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47010 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47465 * 305.00010 * 10 9 7 12 12 C 1.50698 * 109.47080 * 65.00685 * 10 9 7 13 13 H 1.08002 * 120.00223 * 26.94016 * 12 10 9 14 14 C 1.37886 * 120.00006 * 206.93845 * 12 10 9 15 15 N 1.31507 * 120.00030 * 186.61954 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 6.90022 * 14 12 10 17 17 H 1.48503 * 109.46742 * 274.25466 * 16 14 12 18 18 H 1.48500 * 109.47460 * 34.25082 * 16 14 12 19 19 H 1.48499 * 109.46928 * 154.25467 * 16 14 12 20 20 C 1.50706 * 109.46940 * 184.99987 * 10 9 7 21 21 C 1.38233 * 119.99857 * 297.92917 * 20 10 9 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 10 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 118.19592 * 20 10 9 26 26 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47094 * 300.00078 * 1 2 3 28 28 H 1.09005 * 109.47393 * 59.99905 * 1 2 3 29 29 H 0.97003 * 120.00335 * 180.02562 * 2 1 3 30 30 H 0.97006 * 119.99741 * 179.97438 * 5 3 2 31 31 H 0.96995 * 120.00096 * 0.02562 * 6 5 3 32 32 H 1.09000 * 109.46914 * 60.00574 * 9 7 6 33 33 H 1.09000 * 109.47087 * 300.00639 * 9 7 6 34 34 H 0.96994 * 119.99996 * 180.27656 * 15 14 12 35 35 H 1.07994 * 120.00554 * 359.97438 * 21 20 10 36 36 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 37 37 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 38 38 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 39 39 H 1.07999 * 120.00162 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 -0.0005 6 7 4.1871 -0.0461 -0.0005 7 6 5.5349 -0.0461 -0.0016 8 8 6.1412 1.0043 -0.0020 9 6 6.2884 -1.3511 -0.0010 10 6 7.7926 -1.0715 -0.0018 11 1 8.0418 -0.4261 -0.8440 12 6 8.1773 -0.3886 1.2854 13 1 7.5911 -0.5494 2.1782 14 6 9.2776 0.4416 1.3234 15 7 9.6905 0.9339 2.4707 16 14 10.1768 0.8732 -0.2561 17 1 11.1792 -0.1800 -0.5585 18 1 9.2015 0.9633 -1.3723 19 1 10.8646 2.1791 -0.0930 20 6 8.5452 -2.3713 -0.1250 21 6 8.4218 -3.3371 0.8563 22 6 9.1086 -4.5313 0.7410 23 6 9.9259 -4.7559 -0.3510 24 6 10.0533 -3.7880 -1.3298 25 6 9.3630 -2.5956 -1.2166 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 3.9716 2.0073 -0.0009 31 1 3.7021 -0.8861 -0.0005 32 1 6.0245 -1.9234 -0.8903 33 1 6.0257 -1.9220 0.8897 34 1 10.4621 1.5211 2.4969 35 1 7.7866 -3.1600 1.7115 36 1 9.0089 -5.2876 1.5054 37 1 10.4646 -5.6877 -0.4398 38 1 10.6915 -3.9636 -2.1831 39 1 9.4625 -1.8395 -1.9813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793176603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:43 Heat of formation + Delta-G solvation = 0.082003 kcal Electronic energy + Delta-G solvation = -22827.832512 eV Core-core repulsion = 19351.139764 eV Total energy + Delta-G solvation = -3476.692748 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36904 -39.15734 -38.40438 -35.55874 -34.68849 -34.14041 -31.84472 -30.96821 -30.26905 -28.82725 -26.80306 -25.88426 -22.81566 -21.97111 -21.19897 -21.00602 -19.75518 -18.93236 -17.43971 -17.03843 -16.33031 -15.78863 -15.74176 -15.31816 -14.72079 -14.61186 -14.58181 -14.20417 -13.96551 -13.40594 -13.27409 -12.80660 -12.70209 -12.49553 -12.43807 -12.16593 -11.97941 -11.37528 -10.96630 -10.86258 -10.65762 -10.54970 -10.42840 -10.01888 -9.69435 -9.42272 -9.41635 -9.17002 -8.52858 -8.27812 -8.10728 -7.90617 -6.05739 -4.03164 1.98114 2.03560 2.13485 2.89220 2.95525 3.25677 3.36433 3.42809 3.44478 4.44584 4.49754 4.74735 4.96481 5.16095 5.30825 5.35788 5.45572 5.49119 5.57023 5.60404 5.75318 5.81059 5.95395 6.14573 6.14853 6.22861 6.36086 6.57828 6.59799 6.66839 6.76433 6.93149 7.07864 7.18212 7.49161 7.54087 7.62904 7.73437 7.78495 8.34846 8.43879 8.75377 8.92881 9.57793 11.07065 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.004490 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.130505 B = 6234.232263 C = 7337.120302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.751 5.751 3 C 0.710 3.290 4 O -0.583 6.583 5 N -0.529 5.529 6 N -0.550 5.550 7 C 0.516 3.484 8 O -0.489 6.489 9 C -0.104 4.104 10 C 0.049 3.951 11 H 0.056 0.944 12 C -0.489 4.489 13 H 0.073 0.927 14 C 0.085 3.915 15 N -0.895 5.895 16 Si 0.867 3.133 17 H -0.274 1.274 18 H -0.261 1.261 19 H -0.291 1.291 20 C -0.040 4.040 21 C -0.101 4.101 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.124 4.124 25 C -0.138 4.138 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.394 0.606 30 H 0.443 0.557 31 H 0.411 0.589 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.263 0.737 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.681 -11.058 -6.740 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.409 3.591 4 O -0.458 6.458 5 N -0.284 5.284 6 N -0.306 5.306 7 C 0.302 3.698 8 O -0.357 6.357 9 C -0.146 4.146 10 C 0.029 3.971 11 H 0.074 0.926 12 C -0.526 4.526 13 H 0.091 0.909 14 C -0.118 4.118 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.200 1.200 18 H -0.186 1.186 19 H -0.217 1.217 20 C -0.041 4.041 21 C -0.119 4.119 22 C -0.144 4.144 23 C -0.166 4.166 24 C -0.142 4.142 25 C -0.156 4.156 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.289 0.711 31 H 0.251 0.749 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.638 -9.452 -6.638 16.397 hybrid contribution 0.918 -0.208 -0.613 1.123 sum -10.720 -9.660 -7.250 16.149 Atomic orbital electron populations 1.21423 0.77780 1.02131 1.02463 1.44910 1.08052 1.06933 1.80968 1.15712 0.80327 0.84661 0.78403 1.91007 1.65195 1.30403 1.59222 1.44463 1.02053 1.02073 1.79786 1.45439 1.05196 0.99219 1.80704 1.21274 0.78879 0.93647 0.75955 1.90794 1.66349 1.33084 1.45507 1.21617 0.97848 0.92426 1.02730 1.18250 0.87838 0.90471 1.00518 0.92612 1.20590 1.12195 1.26000 0.93830 0.90910 1.24872 0.96364 0.95000 0.95524 1.69878 1.25524 1.33052 1.24797 0.86963 0.80030 0.78048 0.85422 1.19955 1.18606 1.21742 1.20706 0.96123 0.95425 0.91866 1.20951 0.99885 0.92658 0.98379 1.21065 0.97993 0.97650 0.97714 1.20880 1.00928 0.99106 0.95730 1.20965 0.99903 0.94421 0.98919 1.21061 0.99034 0.96985 0.98532 0.90504 0.92172 0.92218 0.77190 0.71085 0.74887 0.90470 0.89000 0.92699 0.86162 0.87117 0.87360 0.87305 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.80 10.70 59.84 0.64 1.44 16 2 N -0.75 -7.12 5.68 -72.07 -0.41 -7.52 16 3 C 0.71 9.94 8.68 -86.92 -0.75 9.18 16 4 O -0.58 -10.32 17.18 5.29 0.09 -10.23 16 5 N -0.53 -7.62 6.26 27.63 0.17 -7.45 16 6 N -0.55 -7.08 6.26 31.22 0.20 -6.88 16 7 C 0.52 8.92 7.69 -10.99 -0.08 8.83 16 8 O -0.49 -11.06 14.82 5.56 0.08 -10.97 16 9 C -0.10 -1.67 4.93 -27.88 -0.14 -1.81 16 10 C 0.05 1.03 1.21 -92.92 -0.11 0.91 16 11 H 0.06 1.28 4.88 -51.93 -0.25 1.03 16 12 C -0.49 -12.78 6.97 -34.44 -0.24 -13.02 16 13 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 14 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 15 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 16 Si 0.87 22.02 26.62 -169.99 -4.52 17.50 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.26 -6.43 6.29 56.52 0.36 -6.07 16 19 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 20 C -0.04 -0.79 4.52 -104.62 -0.47 -1.26 16 21 C -0.10 -1.81 8.86 -39.58 -0.35 -2.16 16 22 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 23 C -0.15 -2.28 10.05 -39.58 -0.40 -2.68 16 24 C -0.12 -2.02 10.05 -39.58 -0.40 -2.42 16 25 C -0.14 -2.56 9.08 -39.58 -0.36 -2.92 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.39 2.59 6.75 -40.82 -0.28 2.32 16 30 H 0.44 7.13 8.10 -182.59 -1.48 5.65 16 31 H 0.41 3.50 6.70 -182.60 -1.22 2.27 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.31 7.69 -51.93 -0.40 0.91 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.12 2.10 7.72 -52.49 -0.40 1.69 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.97 7.91 -52.49 -0.42 1.55 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -35.83 332.39 -8.79 -44.61 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.01 Total: 8.45 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -3.16 Total: -5.97 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.73 Total: -48.40 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.17 Total: -21.21 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.52 Total: 17.50 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.83 -8.79 -44.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793176603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.695 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds