Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99827 * 2 1 4 4 O 1.21585 * 120.00168 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99814 * 180.02562 * 3 2 1 6 6 N 1.40100 * 119.99994 * 359.97438 * 5 3 2 7 7 C 1.34777 * 119.99919 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00194 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47010 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47465 * 305.00010 * 10 9 7 12 12 C 1.50698 * 109.47080 * 65.00685 * 10 9 7 13 13 H 1.08002 * 120.00223 * 26.94016 * 12 10 9 14 14 C 1.37886 * 120.00006 * 206.93845 * 12 10 9 15 15 N 1.31507 * 120.00030 * 186.61954 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 6.90022 * 14 12 10 17 17 H 1.48503 * 109.46742 * 274.25466 * 16 14 12 18 18 H 1.48500 * 109.47460 * 34.25082 * 16 14 12 19 19 H 1.48499 * 109.46928 * 154.25467 * 16 14 12 20 20 C 1.50706 * 109.46940 * 184.99987 * 10 9 7 21 21 C 1.38233 * 119.99857 * 297.92917 * 20 10 9 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 10 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 118.19592 * 20 10 9 26 26 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47094 * 300.00078 * 1 2 3 28 28 H 1.09005 * 109.47393 * 59.99905 * 1 2 3 29 29 H 0.97003 * 120.00335 * 180.02562 * 2 1 3 30 30 H 0.97006 * 119.99741 * 179.97438 * 5 3 2 31 31 H 0.96995 * 120.00096 * 0.02562 * 6 5 3 32 32 H 1.09000 * 109.46914 * 60.00574 * 9 7 6 33 33 H 1.09000 * 109.47087 * 300.00639 * 9 7 6 34 34 H 0.96994 * 119.99996 * 180.27656 * 15 14 12 35 35 H 1.07994 * 120.00554 * 359.97438 * 21 20 10 36 36 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 37 37 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 38 38 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 39 39 H 1.07999 * 120.00162 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 -0.0005 6 7 4.1871 -0.0461 -0.0005 7 6 5.5349 -0.0461 -0.0016 8 8 6.1412 1.0043 -0.0020 9 6 6.2884 -1.3511 -0.0010 10 6 7.7926 -1.0715 -0.0018 11 1 8.0418 -0.4261 -0.8440 12 6 8.1773 -0.3886 1.2854 13 1 7.5911 -0.5494 2.1782 14 6 9.2776 0.4416 1.3234 15 7 9.6905 0.9339 2.4707 16 14 10.1768 0.8732 -0.2561 17 1 11.1792 -0.1800 -0.5585 18 1 9.2015 0.9633 -1.3723 19 1 10.8646 2.1791 -0.0930 20 6 8.5452 -2.3713 -0.1250 21 6 8.4218 -3.3371 0.8563 22 6 9.1086 -4.5313 0.7410 23 6 9.9259 -4.7559 -0.3510 24 6 10.0533 -3.7880 -1.3298 25 6 9.3630 -2.5956 -1.2166 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 3.9716 2.0073 -0.0009 31 1 3.7021 -0.8861 -0.0005 32 1 6.0245 -1.9234 -0.8903 33 1 6.0257 -1.9220 0.8897 34 1 10.4621 1.5211 2.4969 35 1 7.7866 -3.1600 1.7115 36 1 9.0089 -5.2876 1.5054 37 1 10.4646 -5.6877 -0.4398 38 1 10.6915 -3.9636 -2.1831 39 1 9.4625 -1.8395 -1.9813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793176603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -27.657012 kcal Electronic energy + Delta-G solvation = -22829.035366 eV Core-core repulsion = 19351.139764 eV Total energy + Delta-G solvation = -3477.895602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55642 -40.49985 -39.73135 -36.87630 -35.84506 -35.53578 -33.76589 -32.28408 -31.56059 -30.14332 -27.84739 -27.36503 -24.40768 -23.28556 -22.34320 -22.20617 -21.08580 -20.17987 -19.02754 -18.69379 -17.60103 -16.97077 -16.90426 -16.53749 -16.34384 -15.99293 -15.63263 -15.57384 -15.36870 -14.90243 -14.60704 -14.22258 -14.06909 -13.92021 -13.69849 -13.32939 -13.02729 -12.95788 -12.75195 -12.34723 -12.11730 -11.86581 -11.85468 -11.77262 -11.48179 -11.03763 -10.85052 -10.63371 -10.33455 -9.58790 -9.30166 -9.28200 -8.21931 -6.17480 0.70058 0.74077 0.91333 1.31208 1.35833 1.42071 1.63260 2.02808 2.06633 2.39969 3.09647 3.23132 3.57263 4.11142 4.16953 4.30285 4.34292 4.45244 4.46603 4.52375 4.65572 4.67998 4.86908 4.89869 4.97635 5.03288 5.24247 5.31231 5.38328 5.43260 5.45795 5.60707 5.70360 5.80324 5.85013 6.04659 6.33350 6.37998 6.42994 6.72064 6.83047 7.25852 7.45482 7.51025 8.94982 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.004490 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.130505 B = 6234.232263 C = 7337.120302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.733 5.733 3 C 0.707 3.293 4 O -0.623 6.623 5 N -0.538 5.538 6 N -0.522 5.522 7 C 0.515 3.485 8 O -0.552 6.552 9 C -0.099 4.099 10 C 0.047 3.953 11 H 0.036 0.964 12 C -0.462 4.462 13 H 0.041 0.959 14 C 0.023 3.977 15 N -0.952 5.952 16 Si 0.916 3.084 17 H -0.261 1.261 18 H -0.253 1.253 19 H -0.304 1.304 20 C -0.061 4.061 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.141 4.141 24 C -0.126 4.126 25 C -0.156 4.156 26 H 0.120 0.880 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.411 0.589 30 H 0.433 0.567 31 H 0.435 0.565 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.258 0.742 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 -14.916 -8.289 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.391 5.391 3 C 0.406 3.594 4 O -0.502 6.502 5 N -0.290 5.290 6 N -0.279 5.279 7 C 0.303 3.697 8 O -0.425 6.425 9 C -0.141 4.141 10 C 0.028 3.972 11 H 0.054 0.946 12 C -0.499 4.499 13 H 0.059 0.941 14 C -0.174 4.174 15 N -0.593 5.593 16 Si 0.743 3.257 17 H -0.186 1.186 18 H -0.178 1.178 19 H -0.231 1.231 20 C -0.062 4.062 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.159 4.159 24 C -0.144 4.144 25 C -0.175 4.175 26 H 0.139 0.861 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.248 0.752 30 H 0.277 0.723 31 H 0.280 0.720 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.548 -13.431 -8.218 20.134 hybrid contribution 1.040 0.821 -0.138 1.333 sum -11.508 -12.610 -8.356 19.007 Atomic orbital electron populations 1.21670 0.76194 1.04767 1.01684 1.44864 1.08949 1.06097 1.79142 1.15898 0.79931 0.85364 0.78192 1.90975 1.65808 1.32335 1.61033 1.44544 1.02370 1.02124 1.79997 1.45026 1.04269 0.99790 1.78770 1.21541 0.79886 0.93284 0.75030 1.90783 1.67957 1.35057 1.48752 1.21573 0.94298 0.92262 1.05927 1.18136 0.91501 0.90906 0.96678 0.94556 1.20873 1.09895 1.24349 0.94824 0.94102 1.25571 0.98097 0.96117 0.97587 1.70023 1.26957 1.35603 1.26761 0.86186 0.79309 0.77363 0.82859 1.18631 1.17801 1.23091 1.20430 0.97101 0.95130 0.93497 1.21045 1.00782 0.93482 0.97979 1.21416 0.96983 0.97263 0.98563 1.21335 0.99908 1.00047 0.94616 1.21314 0.99458 0.93548 1.00084 1.21197 0.99529 0.98205 0.98528 0.86139 0.93158 0.92882 0.75237 0.72304 0.72024 0.85913 0.86912 0.93349 0.86433 0.84225 0.83838 0.84587 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 10.70 127.77 1.37 2.63 16 2 N -0.73 -12.17 5.68 -500.19 -2.84 -15.01 16 3 C 0.71 19.27 8.68 179.05 1.55 20.83 16 4 O -0.62 -22.26 17.18 -3.99 -0.07 -22.33 16 5 N -0.54 -15.33 6.26 -184.74 -1.16 -16.49 16 6 N -0.52 -12.60 6.26 -173.53 -1.09 -13.69 16 7 C 0.51 17.44 7.69 87.66 0.67 18.11 16 8 O -0.55 -25.61 14.82 -3.03 -0.04 -25.65 16 9 C -0.10 -2.99 4.93 29.85 0.15 -2.84 16 10 C 0.05 1.97 1.21 -12.29 -0.01 1.96 16 11 H 0.04 1.66 4.88 -2.39 -0.01 1.65 16 12 C -0.46 -24.71 6.97 25.60 0.18 -24.54 16 13 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 14 C 0.02 1.33 5.47 84.66 0.46 1.80 16 15 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 16 Si 0.92 46.78 26.62 68.60 1.83 48.61 16 17 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.25 -12.44 6.29 99.48 0.63 -11.82 16 19 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 20 C -0.06 -2.28 4.52 -19.87 -0.09 -2.37 16 21 C -0.11 -3.88 8.86 22.27 0.20 -3.68 16 22 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16 23 C -0.14 -3.69 10.05 22.27 0.22 -3.46 16 24 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 25 C -0.16 -5.46 9.08 22.27 0.20 -5.26 16 26 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.41 3.96 6.75 -92.71 -0.63 3.34 16 30 H 0.43 14.41 8.10 -213.31 -1.73 12.69 16 31 H 0.43 6.01 6.70 -213.33 -1.43 4.58 16 32 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.11 2.93 7.69 -2.39 -0.02 2.92 16 34 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.12 3.93 7.72 -2.91 -0.02 3.90 16 36 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.11 3.66 7.91 -2.91 -0.02 3.63 16 Total: -1.00 -83.49 332.39 -0.48 -83.97 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -2.76 Total: 24.63 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.35 Total: -3.49 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -4.78 Total: -105.74 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.11 Total: -47.98 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.83 Total: 48.61 kcal Total: -83.49 -0.48 -83.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793176603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.312 kcal (2) G-P(sol) polarization free energy of solvation -83.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds