Wall clock time and date at job start Tue Mar 31 2020 06:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40104 * 120.00209 * 2 1 4 4 C 1.34777 * 119.99935 * 74.99014 * 3 2 1 5 5 O 1.21283 * 120.00046 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99686 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46990 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.46934 * 305.97546 * 7 6 4 9 9 C 1.50700 * 109.47299 * 65.97885 * 7 6 4 10 10 H 1.08008 * 119.99531 * 26.90748 * 9 7 6 11 11 C 1.37869 * 120.00160 * 206.90965 * 9 7 6 12 12 N 1.31508 * 120.00032 * 353.27812 * 11 9 7 13 13 Si 1.86806 * 120.00073 * 173.54969 * 11 9 7 14 14 H 1.48497 * 109.46895 * 179.72442 * 13 11 9 15 15 H 1.48495 * 109.46957 * 299.72695 * 13 11 9 16 16 H 1.48501 * 109.46761 * 59.72686 * 13 11 9 17 17 C 1.50705 * 109.47056 * 185.97689 * 7 6 4 18 18 C 1.38237 * 120.00118 * 294.44966 * 17 7 6 19 19 C 1.38237 * 119.99818 * 179.78603 * 18 17 7 20 20 C 1.38236 * 120.00003 * 0.44191 * 19 18 17 21 21 C 1.38236 * 119.99991 * 359.81061 * 20 19 18 22 22 C 1.38228 * 119.99825 * 114.71859 * 17 7 6 23 23 C 1.34783 * 120.00277 * 179.97438 * 2 1 3 24 24 N 1.34769 * 120.00232 * 180.02562 * 23 2 1 25 25 O 1.21590 * 119.99606 * 0.02562 * 23 2 1 26 26 H 1.08993 * 109.46959 * 90.00480 * 1 2 3 27 27 H 1.09005 * 109.47184 * 210.00700 * 1 2 3 28 28 H 1.09002 * 109.47235 * 330.00062 * 1 2 3 29 29 H 0.97002 * 119.99686 * 255.00293 * 3 2 1 30 30 H 1.09000 * 109.47229 * 60.00363 * 6 4 3 31 31 H 1.09003 * 109.47630 * 300.00294 * 6 4 3 32 32 H 0.97008 * 120.00303 * 354.69126 * 12 11 9 33 33 H 1.08005 * 119.99967 * 359.97438 * 18 17 7 34 34 H 1.07999 * 119.99448 * 180.27078 * 19 18 17 35 35 H 1.07997 * 119.99991 * 179.83259 * 20 19 18 36 36 H 1.07993 * 119.99965 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.00249 * 359.97438 * 22 17 7 38 38 H 0.97006 * 119.99750 * 359.97438 * 24 23 2 39 39 H 0.96997 * 120.00055 * 180.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1656 1.2133 0.0000 4 6 2.2407 1.9480 1.1274 5 8 1.7023 1.5587 2.1420 6 6 2.9938 3.2534 1.1272 7 6 2.9259 3.8815 2.5207 8 1 1.8845 3.9651 2.8312 9 6 3.6740 3.0139 3.4998 10 1 4.4829 2.3859 3.1564 11 6 3.3258 3.0217 4.8338 12 7 2.4329 3.8803 5.2753 13 14 4.1281 1.8178 6.0156 14 1 3.5901 2.0334 7.3828 15 1 3.8348 0.4283 5.5816 16 1 5.5971 2.0349 6.0217 17 6 3.5510 5.2524 2.4848 18 6 4.9026 5.3893 2.2289 19 6 5.4750 6.6470 2.1916 20 6 4.6977 7.7672 2.4192 21 6 3.3472 7.6300 2.6802 22 6 2.7739 6.3725 2.7132 23 6 2.1390 -1.1672 0.0005 24 7 3.4866 -1.1672 0.0010 25 8 1.5310 -2.2202 0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5140 28 1 -0.3634 0.8900 0.5138 29 1 2.5963 1.5246 -0.8115 30 1 2.5458 3.9312 0.4005 31 1 4.0352 3.0721 0.8610 32 1 2.0760 4.5581 4.6802 33 1 5.5107 4.5137 2.0552 34 1 6.5301 6.7541 1.9874 35 1 5.1455 8.7496 2.3927 36 1 2.7398 8.5051 2.8575 37 1 1.7187 6.2653 2.9169 38 1 3.9716 -0.3271 0.0007 39 1 3.9716 -2.0072 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793752457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:48 Heat of formation + Delta-G solvation = -9.206424 kcal Electronic energy + Delta-G solvation = -23363.951646 eV Core-core repulsion = 19886.856122 eV Total energy + Delta-G solvation = -3477.095525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26825 -38.98217 -38.27261 -35.64011 -34.30411 -33.50927 -31.90047 -31.11591 -30.18900 -28.89926 -26.60070 -25.08692 -23.11361 -21.80659 -21.28101 -20.20447 -19.75422 -18.74831 -17.47088 -17.07811 -16.62741 -15.93546 -15.37972 -15.00888 -14.65791 -14.60469 -14.23384 -14.03825 -13.71619 -13.40781 -13.01494 -12.87466 -12.53374 -12.47361 -12.23334 -11.97693 -11.61753 -11.12852 -10.77834 -10.58891 -10.52413 -10.23210 -10.09866 -9.82031 -9.75109 -9.62416 -9.25598 -8.78680 -8.60309 -8.36855 -8.21609 -7.73244 -6.30653 -4.01519 1.97186 2.11389 2.19000 3.12792 3.19319 3.45108 3.51956 3.54134 3.66639 4.52801 4.60223 4.79794 5.23682 5.42883 5.50022 5.53187 5.54620 5.55988 5.67229 5.82037 5.86880 5.88706 6.05423 6.22653 6.30527 6.49868 6.53301 6.69502 6.75896 6.83300 6.93889 7.08971 7.15023 7.27773 7.56964 7.61632 7.77100 7.88410 8.10151 8.41187 8.52114 8.84830 8.88388 9.67719 11.08603 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.005293 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.834768 B = 5288.628795 C = 6298.056300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.424 5.424 3 N -0.548 5.548 4 C 0.509 3.491 5 O -0.473 6.473 6 C -0.107 4.107 7 C 0.074 3.926 8 H 0.051 0.949 9 C -0.572 4.572 10 H 0.046 0.954 11 C 0.034 3.966 12 N -0.903 5.903 13 Si 1.058 2.942 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.290 1.290 17 C -0.034 4.034 18 C -0.106 4.106 19 C -0.130 4.130 20 C -0.151 4.151 21 C -0.124 4.124 22 C -0.129 4.129 23 C 0.719 3.281 24 N -0.860 5.860 25 O -0.590 6.590 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.407 0.593 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.271 0.729 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.400 0.600 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 0.952 -13.305 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.252 5.252 3 N -0.303 5.303 4 C 0.295 3.705 5 O -0.339 6.339 6 C -0.149 4.149 7 C 0.054 3.946 8 H 0.069 0.931 9 C -0.610 4.610 10 H 0.064 0.936 11 C -0.172 4.172 12 N -0.537 5.537 13 Si 0.887 3.113 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.217 1.217 17 C -0.035 4.035 18 C -0.124 4.124 19 C -0.148 4.148 20 C -0.169 4.169 21 C -0.142 4.142 22 C -0.147 4.147 23 C 0.418 3.582 24 N -0.427 5.427 25 O -0.466 6.466 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.247 0.753 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.228 0.772 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.905 -0.508 -10.915 11.091 hybrid contribution 0.832 0.883 -1.848 2.211 sum 2.737 0.375 -12.763 13.058 Atomic orbital electron populations 1.21724 0.75829 1.04204 1.01385 1.46182 1.04384 0.95734 1.78941 1.45726 1.56168 1.14175 1.14250 1.21583 0.81049 0.85979 0.81859 1.90810 1.42706 1.69582 1.30809 1.21684 0.99653 0.91704 1.01874 1.17872 0.98134 0.88269 0.90305 0.93118 1.21512 1.19663 1.25723 0.94065 0.93578 1.25566 0.95463 0.98859 0.97322 1.70745 1.27021 1.16417 1.39559 0.83701 0.75331 0.75851 0.76379 1.20870 1.21496 1.21652 1.20790 0.93791 0.96406 0.92537 1.20918 0.95031 0.96241 1.00207 1.21023 0.98822 0.93179 1.01769 1.20845 0.94322 0.97806 1.03940 1.20974 0.95077 0.97009 1.01175 1.21073 0.99638 0.92296 1.01728 1.15847 0.82410 0.82788 0.77137 1.42895 1.05375 1.12732 1.81746 1.90970 1.67907 1.28533 1.59208 0.92794 0.89607 0.90646 0.75309 0.90903 0.89636 0.91741 0.86637 0.87410 0.87543 0.87410 0.87128 0.77159 0.75463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.53 10.51 59.85 0.63 2.16 16 2 N -0.42 -6.33 3.15 -72.07 -0.23 -6.56 16 3 N -0.55 -7.25 4.83 31.22 0.15 -7.10 16 4 C 0.51 9.03 7.57 -10.99 -0.08 8.94 16 5 O -0.47 -11.14 15.19 5.55 0.08 -11.05 16 6 C -0.11 -1.79 4.95 -27.88 -0.14 -1.93 16 7 C 0.07 1.62 1.23 -92.92 -0.11 1.51 16 8 H 0.05 1.28 6.59 -51.93 -0.34 0.94 16 9 C -0.57 -14.68 6.35 -34.44 -0.22 -14.90 16 10 H 0.05 1.18 7.82 -52.48 -0.41 0.76 16 11 C 0.03 0.95 5.45 -17.83 -0.10 0.85 16 12 N -0.90 -26.80 13.56 55.43 0.75 -26.05 16 13 Si 1.06 25.74 29.91 -169.99 -5.08 20.66 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.03 -0.71 4.53 -104.62 -0.47 -1.18 16 18 C -0.11 -2.00 8.90 -39.58 -0.35 -2.35 16 19 C -0.13 -2.18 10.05 -39.58 -0.40 -2.57 16 20 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 21 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 22 C -0.13 -2.52 9.18 -39.58 -0.36 -2.89 16 23 C 0.72 11.44 8.67 -86.92 -0.75 10.69 16 24 N -0.86 -10.38 8.84 27.63 0.24 -10.14 16 25 O -0.59 -11.24 16.76 5.29 0.09 -11.15 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 28 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 29 H 0.41 3.73 8.83 -182.59 -1.61 2.12 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.27 7.96 -51.93 -0.41 0.85 16 32 H 0.27 7.88 6.24 -40.82 -0.25 7.62 16 33 H 0.12 2.10 7.85 -52.48 -0.41 1.68 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 2.14 7.95 -52.49 -0.42 1.72 16 38 H 0.40 4.18 7.87 -40.82 -0.32 3.86 16 39 H 0.41 4.22 8.93 -40.82 -0.36 3.85 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -35.51 337.03 -8.33 -43.84 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.26 Total: 9.55 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.16 Total: -7.07 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.92 Total: -49.85 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.17 Total: -22.20 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.51 -8.33 -43.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793752457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.636 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds