Wall clock time and date at job start Tue Mar 31 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40104 * 120.00209 * 2 1 4 4 C 1.34777 * 119.99935 * 74.99014 * 3 2 1 5 5 O 1.21283 * 120.00046 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99686 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46990 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.46934 * 305.97546 * 7 6 4 9 9 C 1.50700 * 109.47299 * 65.97885 * 7 6 4 10 10 H 1.08008 * 119.99531 * 26.90748 * 9 7 6 11 11 C 1.37869 * 120.00160 * 206.90965 * 9 7 6 12 12 N 1.31508 * 120.00032 * 353.27812 * 11 9 7 13 13 Si 1.86806 * 120.00073 * 173.54969 * 11 9 7 14 14 H 1.48497 * 109.46895 * 179.72442 * 13 11 9 15 15 H 1.48495 * 109.46957 * 299.72695 * 13 11 9 16 16 H 1.48501 * 109.46761 * 59.72686 * 13 11 9 17 17 C 1.50705 * 109.47056 * 185.97689 * 7 6 4 18 18 C 1.38237 * 120.00118 * 294.44966 * 17 7 6 19 19 C 1.38237 * 119.99818 * 179.78603 * 18 17 7 20 20 C 1.38236 * 120.00003 * 0.44191 * 19 18 17 21 21 C 1.38236 * 119.99991 * 359.81061 * 20 19 18 22 22 C 1.38228 * 119.99825 * 114.71859 * 17 7 6 23 23 C 1.34783 * 120.00277 * 179.97438 * 2 1 3 24 24 N 1.34769 * 120.00232 * 180.02562 * 23 2 1 25 25 O 1.21590 * 119.99606 * 0.02562 * 23 2 1 26 26 H 1.08993 * 109.46959 * 90.00480 * 1 2 3 27 27 H 1.09005 * 109.47184 * 210.00700 * 1 2 3 28 28 H 1.09002 * 109.47235 * 330.00062 * 1 2 3 29 29 H 0.97002 * 119.99686 * 255.00293 * 3 2 1 30 30 H 1.09000 * 109.47229 * 60.00363 * 6 4 3 31 31 H 1.09003 * 109.47630 * 300.00294 * 6 4 3 32 32 H 0.97008 * 120.00303 * 354.69126 * 12 11 9 33 33 H 1.08005 * 119.99967 * 359.97438 * 18 17 7 34 34 H 1.07999 * 119.99448 * 180.27078 * 19 18 17 35 35 H 1.07997 * 119.99991 * 179.83259 * 20 19 18 36 36 H 1.07993 * 119.99965 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.00249 * 359.97438 * 22 17 7 38 38 H 0.97006 * 119.99750 * 359.97438 * 24 23 2 39 39 H 0.96997 * 120.00055 * 180.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1656 1.2133 0.0000 4 6 2.2407 1.9480 1.1274 5 8 1.7023 1.5587 2.1420 6 6 2.9938 3.2534 1.1272 7 6 2.9259 3.8815 2.5207 8 1 1.8845 3.9651 2.8312 9 6 3.6740 3.0139 3.4998 10 1 4.4829 2.3859 3.1564 11 6 3.3258 3.0217 4.8338 12 7 2.4329 3.8803 5.2753 13 14 4.1281 1.8178 6.0156 14 1 3.5901 2.0334 7.3828 15 1 3.8348 0.4283 5.5816 16 1 5.5971 2.0349 6.0217 17 6 3.5510 5.2524 2.4848 18 6 4.9026 5.3893 2.2289 19 6 5.4750 6.6470 2.1916 20 6 4.6977 7.7672 2.4192 21 6 3.3472 7.6300 2.6802 22 6 2.7739 6.3725 2.7132 23 6 2.1390 -1.1672 0.0005 24 7 3.4866 -1.1672 0.0010 25 8 1.5310 -2.2202 0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5140 28 1 -0.3634 0.8900 0.5138 29 1 2.5963 1.5246 -0.8115 30 1 2.5458 3.9312 0.4005 31 1 4.0352 3.0721 0.8610 32 1 2.0760 4.5581 4.6802 33 1 5.5107 4.5137 2.0552 34 1 6.5301 6.7541 1.9874 35 1 5.1455 8.7496 2.3927 36 1 2.7398 8.5051 2.8575 37 1 1.7187 6.2653 2.9169 38 1 3.9716 -0.3271 0.0007 39 1 3.9716 -2.0072 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793752457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:47 Heat of formation + Delta-G solvation = -34.932758 kcal Electronic energy + Delta-G solvation = -23365.067224 eV Core-core repulsion = 19886.856122 eV Total energy + Delta-G solvation = -3478.211102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56421 -40.41238 -39.68159 -37.01158 -35.99742 -34.63694 -33.52243 -32.64924 -31.56720 -30.27727 -27.84009 -26.82309 -24.77866 -23.20470 -22.59458 -21.54008 -21.26418 -19.96245 -18.80434 -18.61729 -18.17194 -17.27714 -16.70220 -16.32741 -16.04551 -15.88796 -15.67151 -15.63959 -15.44730 -14.88191 -14.53091 -14.11683 -14.02550 -13.93673 -13.53151 -13.38818 -13.14364 -12.71155 -12.63494 -12.08446 -11.97064 -11.95055 -11.70164 -11.49381 -11.16840 -10.83655 -10.65408 -10.59905 -10.38681 -9.84867 -9.60080 -9.24143 -8.41894 -6.10045 0.70133 0.72940 0.86105 1.48015 1.57760 1.71634 1.73030 1.94185 2.41876 2.61848 3.13813 3.36876 3.60659 4.07208 4.16415 4.30130 4.31138 4.34662 4.47302 4.50440 4.52060 4.65735 4.76840 4.86644 4.90043 5.09880 5.25675 5.32769 5.43116 5.46655 5.68890 5.79038 5.85399 5.89419 5.96207 6.25223 6.33702 6.39790 6.44872 6.68305 6.80563 7.34991 7.57080 7.65013 8.98366 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.005293 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.834768 B = 5288.628795 C = 6298.056300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.430 5.430 3 N -0.519 5.519 4 C 0.515 3.485 5 O -0.540 6.540 6 C -0.100 4.100 7 C 0.074 3.926 8 H 0.005 0.995 9 C -0.555 4.555 10 H 0.046 0.954 11 C -0.024 4.024 12 N -0.945 5.945 13 Si 1.091 2.909 14 H -0.294 1.294 15 H -0.291 1.291 16 H -0.264 1.264 17 C -0.055 4.055 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.145 4.145 21 C -0.127 4.127 22 C -0.151 4.151 23 C 0.710 3.290 24 N -0.843 5.843 25 O -0.626 6.626 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.433 0.567 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.262 0.738 33 H 0.120 0.880 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.410 0.590 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 2.197 -15.463 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.258 5.258 3 N -0.276 5.276 4 C 0.302 3.698 5 O -0.412 6.412 6 C -0.142 4.142 7 C 0.054 3.946 8 H 0.023 0.977 9 C -0.594 4.594 10 H 0.064 0.936 11 C -0.223 4.223 12 N -0.584 5.584 13 Si 0.917 3.083 14 H -0.220 1.220 15 H -0.218 1.218 16 H -0.189 1.189 17 C -0.055 4.055 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.163 4.163 21 C -0.145 4.145 22 C -0.170 4.170 23 C 0.409 3.591 24 N -0.411 5.411 25 O -0.504 6.504 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.278 0.722 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.113 0.887 38 H 0.240 0.760 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.478 0.753 -13.158 13.920 hybrid contribution 0.073 0.559 -1.293 1.410 sum 4.552 1.312 -14.451 15.208 Atomic orbital electron populations 1.21792 0.75337 1.03049 1.03109 1.46290 1.04923 0.95895 1.78681 1.45282 1.55123 1.13055 1.14122 1.21767 0.79965 0.86289 0.81768 1.90806 1.45626 1.71172 1.33560 1.21589 1.01544 0.91489 0.99574 1.17708 0.95037 0.89488 0.92352 0.97651 1.21828 1.18533 1.24817 0.94173 0.93559 1.26568 0.96044 0.99901 0.99762 1.70815 1.29677 1.18105 1.39783 0.83264 0.76191 0.74294 0.74529 1.21994 1.21751 1.18874 1.20571 0.94818 0.95424 0.94720 1.21036 0.94137 0.97675 1.00788 1.21411 1.00541 0.92252 1.00139 1.21301 0.93678 0.99481 1.01864 1.21279 0.96198 0.96687 1.00356 1.21127 0.99273 0.93583 1.03003 1.16073 0.83351 0.82464 0.77192 1.42760 1.04107 1.13902 1.80346 1.90943 1.68882 1.29759 1.60856 0.89530 0.91077 0.91542 0.72198 0.87533 0.86775 0.92732 0.86171 0.84042 0.83919 0.85061 0.88682 0.75973 0.74283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.97 10.51 127.77 1.34 4.31 16 2 N -0.43 -12.38 3.15 -500.19 -1.58 -13.95 16 3 N -0.52 -12.73 4.83 -173.53 -0.84 -13.57 16 4 C 0.51 17.85 7.57 87.66 0.66 18.51 16 5 O -0.54 -26.09 15.19 -3.04 -0.05 -26.14 16 6 C -0.10 -3.20 4.95 29.85 0.15 -3.06 16 7 C 0.07 3.28 1.23 -12.28 -0.02 3.27 16 8 H 0.01 0.28 6.59 -2.39 -0.02 0.27 16 9 C -0.56 -28.77 6.35 25.60 0.16 -28.60 16 10 H 0.05 2.33 7.82 -2.91 -0.02 2.31 16 11 C -0.02 -1.36 5.45 84.65 0.46 -0.90 16 12 N -0.95 -58.60 13.56 21.44 0.29 -58.31 16 13 Si 1.09 52.82 29.91 68.60 2.05 54.87 16 14 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 15 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 C -0.05 -2.22 4.53 -19.87 -0.09 -2.31 16 18 C -0.12 -4.19 8.90 22.27 0.20 -3.99 16 19 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 20 C -0.15 -4.17 10.05 22.27 0.22 -3.94 16 21 C -0.13 -4.13 10.05 22.27 0.22 -3.90 16 22 C -0.15 -5.95 9.18 22.27 0.20 -5.74 16 23 C 0.71 21.89 8.67 179.05 1.55 23.45 16 24 N -0.84 -18.79 8.84 -184.75 -1.63 -20.42 16 25 O -0.63 -23.69 16.76 -4.00 -0.07 -23.76 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 2.13 7.42 -2.38 -0.02 2.11 16 28 H 0.07 1.91 8.07 -2.39 -0.02 1.89 16 29 H 0.43 6.46 8.83 -213.32 -1.88 4.58 16 30 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.11 3.01 7.96 -2.39 -0.02 2.99 16 32 H 0.26 16.12 6.24 -92.70 -0.58 15.54 16 33 H 0.12 4.04 7.85 -2.91 -0.02 4.02 16 34 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 37 H 0.09 3.89 7.95 -2.91 -0.02 3.87 16 38 H 0.41 7.50 7.87 -92.70 -0.73 6.77 16 39 H 0.42 7.87 8.93 -92.71 -0.83 7.05 16 Total: -1.00 -81.39 337.03 1.33 -80.05 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -2.15 Total: 27.63 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.30 Total: -6.41 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -3.76 Total: -106.25 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -0.11 Total: -49.89 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 2.05 Total: 54.87 kcal Total: -81.39 1.33 -80.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793752457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.122 kcal (2) G-P(sol) polarization free energy of solvation -81.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds