Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35500 * 117.00212 * 2 1 4 4 C 1.39640 * 120.49508 * 180.02562 * 3 2 1 5 5 C 1.39139 * 118.21093 * 179.97438 * 4 3 2 6 6 C 1.48449 * 120.52031 * 180.02562 * 5 4 3 7 7 O 1.21485 * 119.99718 * 351.93364 * 6 5 4 8 8 N 1.34777 * 120.00481 * 171.93966 * 6 5 4 9 9 C 1.46927 * 120.62778 * 349.88966 * 8 6 5 10 10 C 1.53187 * 108.77688 * 233.61242 * 9 8 6 11 11 C 1.53037 * 109.31517 * 305.36497 * 10 9 8 12 12 C 1.53044 * 109.53704 * 61.36276 * 11 10 9 13 13 H 1.09004 * 109.49942 * 58.62246 * 12 11 10 14 14 C 1.50698 * 109.49880 * 178.68734 * 12 11 10 15 15 H 1.07998 * 119.99806 * 6.17596 * 14 12 11 16 16 C 1.37878 * 120.00170 * 185.89939 * 14 12 11 17 17 N 1.31519 * 119.99688 * 355.87476 * 16 14 12 18 18 Si 1.86796 * 120.00112 * 175.87177 * 16 14 12 19 19 H 1.48501 * 109.47092 * 94.99840 * 18 16 14 20 20 H 1.48504 * 109.47137 * 214.99740 * 18 16 14 21 21 H 1.48501 * 109.47381 * 334.99506 * 18 16 14 22 22 C 1.46931 * 120.60907 * 169.91537 * 8 6 5 23 23 N 1.33284 * 118.96682 * 0.27209 * 5 4 3 24 24 C 1.31534 * 120.87912 * 359.44125 * 23 5 4 25 25 N 1.31887 * 121.99026 * 0.57925 * 24 23 5 26 26 H 1.09000 * 109.47610 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46663 * 300.00530 * 1 2 3 28 28 H 1.09004 * 109.47050 * 59.99771 * 1 2 3 29 29 H 1.08001 * 120.89461 * 359.95577 * 4 3 2 30 30 H 1.08994 * 109.58885 * 113.82344 * 9 8 6 31 31 H 1.09004 * 109.58551 * 353.40071 * 9 8 6 32 32 H 1.08995 * 109.50205 * 185.41194 * 10 9 8 33 33 H 1.09004 * 109.49816 * 65.31709 * 10 9 8 34 34 H 1.08997 * 109.45975 * 301.34677 * 11 10 9 35 35 H 1.08997 * 109.46343 * 181.38432 * 11 10 9 36 36 H 0.96998 * 119.99572 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.61573 * 6.61675 * 22 8 6 38 38 H 1.09000 * 109.55996 * 246.18896 * 22 8 6 39 39 H 1.07999 * 118.99901 * 180.26201 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4380 1.2924 -0.0005 5 6 4.0199 2.5563 -0.0011 6 6 5.4967 2.7064 -0.0022 7 8 6.2064 1.7314 0.1449 8 7 6.0503 3.9242 -0.1664 9 6 5.2260 5.0737 -0.5637 10 6 5.8481 5.7210 -1.8049 11 6 7.3109 6.0663 -1.5164 12 6 8.0862 4.7854 -1.1996 13 1 8.0145 4.0986 -2.0431 14 6 9.5332 5.1227 -0.9473 15 1 9.8481 6.1550 -0.9081 16 6 10.4539 4.1135 -0.7609 17 7 10.0571 2.8602 -0.7223 18 14 12.2649 4.5263 -0.5632 19 1 12.5978 4.6144 0.8813 20 1 13.0868 3.4639 -1.1967 21 1 12.5501 5.8287 -1.2172 22 6 7.4897 4.1268 0.0482 23 7 3.2305 3.6302 0.0045 24 6 1.9211 3.5057 -0.0006 25 7 1.3315 2.3260 0.0000 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0480 0.4011 -0.0002 30 1 5.1940 5.7989 0.2494 31 1 4.2157 4.7363 -0.7951 32 1 5.3018 6.6308 -2.0534 33 1 5.7969 5.0252 -2.6425 34 1 7.3629 6.7426 -0.6632 35 1 7.7490 6.5494 -2.3897 36 1 10.7048 2.1503 -0.5907 37 1 7.9730 3.1650 0.2202 38 1 7.6423 4.7744 0.9116 39 1 1.3104 4.3964 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824746651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -7.536050 kcal Electronic energy + Delta-G solvation = -23325.915791 eV Core-core repulsion = 19848.892699 eV Total energy + Delta-G solvation = -3477.023092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50531 -39.47142 -38.43997 -36.73577 -33.88139 -32.96387 -31.96557 -31.66280 -29.72980 -27.95159 -25.85196 -24.97804 -24.39146 -23.50071 -21.74977 -20.57869 -19.06201 -18.46752 -17.73316 -16.50167 -16.37747 -15.98924 -15.65896 -15.49435 -14.97355 -14.81427 -14.44072 -14.36378 -13.95624 -13.54428 -13.17288 -12.76513 -12.54583 -12.36506 -12.16875 -11.93315 -11.81358 -11.22161 -10.97755 -10.76284 -10.52159 -10.51153 -10.29649 -10.23952 -9.91082 -9.77656 -9.35047 -9.19688 -9.02765 -8.65399 -8.45479 -7.74001 -5.98859 -4.06888 0.48823 0.84014 2.55744 3.04067 3.31453 3.39340 3.41830 3.45965 3.80799 3.82812 4.01924 4.44382 4.62087 4.87255 4.92061 4.97334 5.14754 5.27318 5.31831 5.44722 5.63899 5.69860 5.84654 5.94003 6.26748 6.38500 6.46228 6.61449 6.67454 6.76736 6.83870 6.90571 7.01281 7.14025 7.26475 7.63435 7.76809 7.86494 7.99249 8.18668 8.38791 8.67649 8.98225 9.58696 11.07178 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.003866 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.062263 B = 7240.913511 C = 8014.325222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.298 6.298 3 C 0.362 3.638 4 C -0.187 4.187 5 C 0.171 3.829 6 C 0.552 3.448 7 O -0.519 6.519 8 N -0.576 5.576 9 C 0.081 3.919 10 C -0.135 4.135 11 C -0.112 4.112 12 C 0.041 3.959 13 H 0.032 0.968 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.879 5.879 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.112 3.888 23 N -0.508 5.508 24 C 0.325 3.675 25 N -0.571 5.571 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.166 0.834 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.665 -0.337 1.098 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.174 3.826 4 C -0.211 4.211 5 C 0.027 3.973 6 C 0.336 3.664 7 O -0.394 6.394 8 N -0.307 5.307 9 C -0.042 4.042 10 C -0.174 4.174 11 C -0.149 4.149 12 C 0.022 3.978 13 H 0.050 0.950 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.516 5.516 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.008 4.008 23 N -0.229 5.229 24 C 0.037 3.963 25 N -0.302 5.302 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.183 0.817 30 H 0.077 0.923 31 H 0.144 0.856 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.604 -0.583 1.214 19.650 hybrid contribution 1.149 -0.341 0.122 1.205 sum -18.455 -0.924 1.336 18.526 Atomic orbital electron populations 1.22979 0.76510 1.03469 1.02798 1.86271 1.23467 1.23752 1.86666 1.20036 0.89243 0.85100 0.88192 1.21946 0.92514 1.00871 1.05775 1.21946 0.95922 0.88281 0.91136 1.17746 0.84512 0.84502 0.79662 1.90834 1.60853 1.37628 1.50088 1.48401 1.11334 1.07214 1.63743 1.22682 0.97097 0.88031 0.96392 1.21991 0.98080 0.99535 0.97752 1.21648 0.93162 0.99946 1.00192 1.18969 0.93560 0.91569 0.93738 0.94956 1.21081 0.91881 0.92853 1.50122 0.92347 1.25067 0.98949 0.95097 0.94927 1.69931 1.34237 0.98954 1.48520 0.86587 0.85234 0.78090 0.78139 1.20745 1.21179 1.19885 1.22424 0.74576 1.04485 0.99321 1.68644 1.05872 1.31748 1.16664 1.24872 0.88675 0.93810 0.88906 1.68008 1.42001 0.99324 1.20861 0.88156 0.91914 0.91880 0.81666 0.92288 0.85552 0.92274 0.92616 0.93270 0.93130 0.92692 0.86555 0.93418 0.77884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.41 101.05 1.05 1.33 16 2 O -0.30 -3.41 10.49 -18.19 -0.19 -3.60 16 3 C 0.36 4.67 7.54 -16.68 -0.13 4.54 16 4 C -0.19 -2.76 9.67 -38.72 -0.37 -3.13 16 5 C 0.17 2.78 6.59 -82.69 -0.54 2.23 16 6 C 0.55 11.35 7.66 -12.05 -0.09 11.25 16 7 O -0.52 -12.49 15.89 5.38 0.09 -12.41 16 8 N -0.58 -11.87 2.97 -173.65 -0.52 -12.39 16 9 C 0.08 1.35 5.85 -3.71 -0.02 1.33 16 10 C -0.14 -2.29 6.08 -26.62 -0.16 -2.45 16 11 C -0.11 -2.27 5.11 -26.69 -0.14 -2.40 16 12 C 0.04 1.01 2.17 -91.65 -0.20 0.82 16 13 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.52 -14.14 8.49 -34.44 -0.29 -14.43 16 15 H 0.06 1.55 7.75 -52.49 -0.41 1.15 16 16 C 0.06 1.74 5.36 -17.82 -0.10 1.64 16 17 N -0.88 -25.68 11.68 55.43 0.65 -25.03 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.11 2.71 5.49 -3.71 -0.02 2.69 16 23 N -0.51 -6.95 6.36 -11.20 -0.07 -7.02 16 24 C 0.32 3.51 12.27 -92.30 -1.13 2.38 16 25 N -0.57 -6.66 9.36 -14.65 -0.14 -6.80 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.12 -51.93 -0.42 0.03 16 29 H 0.17 2.44 7.75 -52.49 -0.41 2.03 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.13 1.90 4.18 -74.58 -0.31 1.59 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.12 3.27 5.43 -51.93 -0.28 2.98 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -31.70 323.16 -7.67 -39.37 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.19 Total: 0.94 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -2.15 Total: 5.80 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.08 Total: -51.23 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.11 Total: -16.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.70 -7.67 -39.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.836 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds