Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35500 * 117.00212 * 2 1 4 4 C 1.39640 * 120.49508 * 180.02562 * 3 2 1 5 5 C 1.39139 * 118.21093 * 179.97438 * 4 3 2 6 6 C 1.48449 * 120.52031 * 180.02562 * 5 4 3 7 7 O 1.21485 * 119.99718 * 351.93364 * 6 5 4 8 8 N 1.34777 * 120.00481 * 171.93966 * 6 5 4 9 9 C 1.46927 * 120.62778 * 349.88966 * 8 6 5 10 10 C 1.53187 * 108.77688 * 233.61242 * 9 8 6 11 11 C 1.53037 * 109.31517 * 305.36497 * 10 9 8 12 12 C 1.53044 * 109.53704 * 61.36276 * 11 10 9 13 13 H 1.09004 * 109.49942 * 58.62246 * 12 11 10 14 14 C 1.50698 * 109.49880 * 178.68734 * 12 11 10 15 15 H 1.07998 * 119.99806 * 6.17596 * 14 12 11 16 16 C 1.37878 * 120.00170 * 185.89939 * 14 12 11 17 17 N 1.31519 * 119.99688 * 355.87476 * 16 14 12 18 18 Si 1.86796 * 120.00112 * 175.87177 * 16 14 12 19 19 H 1.48501 * 109.47092 * 94.99840 * 18 16 14 20 20 H 1.48504 * 109.47137 * 214.99740 * 18 16 14 21 21 H 1.48501 * 109.47381 * 334.99506 * 18 16 14 22 22 C 1.46931 * 120.60907 * 169.91537 * 8 6 5 23 23 N 1.33284 * 118.96682 * 0.27209 * 5 4 3 24 24 C 1.31534 * 120.87912 * 359.44125 * 23 5 4 25 25 N 1.31887 * 121.99026 * 0.57925 * 24 23 5 26 26 H 1.09000 * 109.47610 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46663 * 300.00530 * 1 2 3 28 28 H 1.09004 * 109.47050 * 59.99771 * 1 2 3 29 29 H 1.08001 * 120.89461 * 359.95577 * 4 3 2 30 30 H 1.08994 * 109.58885 * 113.82344 * 9 8 6 31 31 H 1.09004 * 109.58551 * 353.40071 * 9 8 6 32 32 H 1.08995 * 109.50205 * 185.41194 * 10 9 8 33 33 H 1.09004 * 109.49816 * 65.31709 * 10 9 8 34 34 H 1.08997 * 109.45975 * 301.34677 * 11 10 9 35 35 H 1.08997 * 109.46343 * 181.38432 * 11 10 9 36 36 H 0.96998 * 119.99572 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.61573 * 6.61675 * 22 8 6 38 38 H 1.09000 * 109.55996 * 246.18896 * 22 8 6 39 39 H 1.07999 * 118.99901 * 180.26201 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4380 1.2924 -0.0005 5 6 4.0199 2.5563 -0.0011 6 6 5.4967 2.7064 -0.0022 7 8 6.2064 1.7314 0.1449 8 7 6.0503 3.9242 -0.1664 9 6 5.2260 5.0737 -0.5637 10 6 5.8481 5.7210 -1.8049 11 6 7.3109 6.0663 -1.5164 12 6 8.0862 4.7854 -1.1996 13 1 8.0145 4.0986 -2.0431 14 6 9.5332 5.1227 -0.9473 15 1 9.8481 6.1550 -0.9081 16 6 10.4539 4.1135 -0.7609 17 7 10.0571 2.8602 -0.7223 18 14 12.2649 4.5263 -0.5632 19 1 12.5978 4.6144 0.8813 20 1 13.0868 3.4639 -1.1967 21 1 12.5501 5.8287 -1.2172 22 6 7.4897 4.1268 0.0482 23 7 3.2305 3.6302 0.0045 24 6 1.9211 3.5057 -0.0006 25 7 1.3315 2.3260 0.0000 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0480 0.4011 -0.0002 30 1 5.1940 5.7989 0.2494 31 1 4.2157 4.7363 -0.7951 32 1 5.3018 6.6308 -2.0534 33 1 5.7969 5.0252 -2.6425 34 1 7.3629 6.7426 -0.6632 35 1 7.7490 6.5494 -2.3897 36 1 10.7048 2.1503 -0.5907 37 1 7.9730 3.1650 0.2202 38 1 7.6423 4.7744 0.9116 39 1 1.3104 4.3964 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824746651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -29.001648 kcal Electronic energy + Delta-G solvation = -23326.846609 eV Core-core repulsion = 19848.892699 eV Total energy + Delta-G solvation = -3477.953910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.58310 -40.90423 -39.48414 -38.42864 -35.46332 -34.46737 -33.36415 -32.97857 -31.52318 -28.76679 -27.42038 -26.70011 -25.42768 -24.86111 -23.42126 -22.00867 -20.60762 -19.46842 -19.16613 -18.33197 -17.42696 -17.26012 -17.02849 -16.72905 -16.49553 -16.29722 -15.88052 -15.46560 -15.17478 -14.93507 -14.79446 -14.54224 -14.21193 -13.88083 -13.50197 -13.02018 -12.89901 -12.80862 -12.60778 -12.34954 -12.26990 -12.05416 -11.71620 -11.62765 -11.47815 -11.42684 -11.04514 -10.92789 -10.56847 -10.37763 -9.96754 -9.45141 -8.11088 -6.27465 -0.69283 -0.15111 1.41242 1.41949 1.53485 1.57942 1.65583 2.07738 2.42790 2.64279 2.80203 2.97983 3.18019 3.45594 3.74236 4.00781 4.23630 4.26096 4.39845 4.41420 4.42117 4.48226 4.65127 4.69733 4.79003 4.88510 4.90228 5.10757 5.15061 5.27313 5.33652 5.37711 5.56069 5.60945 5.66342 5.88825 5.94174 5.96194 6.32431 6.51171 6.78193 6.85922 7.07409 7.42636 8.93549 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.003866 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.062263 B = 7240.913511 C = 8014.325222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.372 3.628 4 C -0.199 4.199 5 C 0.163 3.837 6 C 0.545 3.455 7 O -0.570 6.570 8 N -0.582 5.582 9 C 0.079 3.921 10 C -0.128 4.128 11 C -0.106 4.106 12 C 0.039 3.961 13 H -0.012 1.012 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.916 5.916 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.262 1.262 22 C 0.125 3.875 23 N -0.514 5.514 24 C 0.339 3.661 25 N -0.561 5.561 26 H 0.127 0.873 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.260 0.740 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.500 1.656 1.126 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.211 6.211 3 C 0.183 3.817 4 C -0.224 4.224 5 C 0.020 3.980 6 C 0.331 3.669 7 O -0.449 6.449 8 N -0.311 5.311 9 C -0.042 4.042 10 C -0.166 4.166 11 C -0.144 4.144 12 C 0.020 3.980 13 H 0.006 0.994 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.554 5.554 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.186 1.186 22 C 0.003 3.997 23 N -0.236 5.236 24 C 0.053 3.947 25 N -0.292 5.292 26 H 0.145 0.855 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.171 0.829 30 H 0.094 0.906 31 H 0.168 0.832 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -22.488 1.445 1.233 22.568 hybrid contribution 1.873 -1.003 0.113 2.128 sum -20.615 0.443 1.346 20.663 Atomic orbital electron populations 1.23320 0.74150 1.05546 1.03347 1.86274 1.25752 1.23073 1.86008 1.19981 0.88525 0.86061 0.87181 1.21844 0.93743 0.99974 1.06810 1.21137 0.93490 0.89749 0.93619 1.18368 0.86566 0.83647 0.78346 1.90793 1.62807 1.39184 1.52133 1.48431 1.10210 1.08708 1.63765 1.23032 0.97456 0.86928 0.96763 1.21972 0.96088 1.01189 0.97358 1.21545 0.94925 0.97352 1.00550 1.18902 0.93815 0.93033 0.92250 0.99420 1.21507 0.93392 0.93017 1.49435 0.91858 1.25924 1.03541 0.94878 0.94729 1.70125 1.35433 0.99989 1.49854 0.85527 0.79711 0.78089 0.78242 1.20146 1.21299 1.18612 1.21862 0.77068 1.01863 0.98916 1.68461 1.07072 1.30533 1.17527 1.25855 0.87723 0.95025 0.86135 1.68179 1.41371 0.99175 1.20458 0.85493 0.91297 0.91263 0.82923 0.90616 0.83191 0.87785 0.93914 0.92276 0.93048 0.93113 0.91034 0.93500 0.72896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.41 113.37 1.18 1.55 16 2 O -0.31 -6.50 10.49 -88.02 -0.92 -7.43 16 3 C 0.37 8.94 7.54 84.91 0.64 9.58 16 4 C -0.20 -5.91 9.67 22.83 0.22 -5.68 16 5 C 0.16 5.27 6.59 41.86 0.28 5.55 16 6 C 0.54 23.40 7.66 86.97 0.67 24.06 16 7 O -0.57 -29.63 15.89 -3.67 -0.06 -29.69 16 8 N -0.58 -24.54 2.97 -821.62 -2.44 -26.98 16 9 C 0.08 2.50 5.85 86.36 0.51 3.00 16 10 C -0.13 -4.06 6.08 30.67 0.19 -3.88 16 11 C -0.11 -4.22 5.11 30.62 0.16 -4.07 16 12 C 0.04 2.03 2.17 -11.46 -0.02 2.00 16 13 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 14 C -0.54 -29.82 8.49 25.60 0.22 -29.60 16 15 H 0.06 3.38 7.75 -2.91 -0.02 3.36 16 16 C 0.01 0.50 5.36 84.65 0.45 0.95 16 17 N -0.92 -56.38 11.68 21.45 0.25 -56.13 16 18 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 C 0.12 6.34 5.49 86.36 0.47 6.82 16 23 N -0.51 -12.75 6.36 -189.36 -1.20 -13.96 16 24 C 0.34 5.93 12.27 180.93 2.22 8.15 16 25 N -0.56 -11.18 9.36 -313.01 -2.93 -14.11 16 26 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 28 H 0.07 0.78 8.12 -2.38 -0.02 0.76 16 29 H 0.15 4.82 7.75 -2.91 -0.02 4.80 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.15 4.08 4.18 -47.12 -0.20 3.88 16 32 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.07 4.32 5.43 -2.39 -0.01 4.30 16 38 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.26 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -74.45 323.16 2.77 -71.69 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.88 Total: 11.49 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 7.17 Total: 18.44 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -6.33 Total: -111.18 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.98 Total: -37.12 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.45 2.77 -71.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.684 kcal (2) G-P(sol) polarization free energy of solvation -74.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds