Wall clock time and date at job start Tue Mar 31 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35509 * 117.00378 * 2 1 4 4 C 1.39638 * 120.50018 * 180.30315 * 3 2 1 5 5 C 1.39148 * 118.21146 * 180.25832 * 4 3 2 6 6 C 1.48443 * 120.51899 * 179.71724 * 5 4 3 7 7 O 1.21483 * 120.00218 * 21.27099 * 6 5 4 8 8 N 1.34776 * 120.00134 * 201.27021 * 6 5 4 9 9 C 1.46928 * 120.62577 * 359.38223 * 8 6 5 10 10 C 1.53194 * 108.89209 * 126.34330 * 9 8 6 11 11 C 1.53355 * 109.14824 * 54.57618 * 10 9 8 12 12 C 1.53046 * 109.60569 * 298.70901 * 11 10 9 13 13 H 1.09001 * 109.49678 * 301.42690 * 12 11 10 14 14 C 1.50702 * 109.49544 * 181.32934 * 12 11 10 15 15 H 1.08002 * 120.00005 * 0.15933 * 14 12 11 16 16 C 1.37879 * 119.99904 * 180.16892 * 14 12 11 17 17 N 1.31510 * 119.99651 * 359.97438 * 16 14 12 18 18 Si 1.86790 * 119.99867 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47599 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47557 * 119.99774 * 18 16 14 21 21 H 1.48507 * 109.47240 * 239.99367 * 18 16 14 22 22 C 1.46923 * 120.63463 * 179.40466 * 8 6 5 23 23 N 1.33277 * 118.96088 * 359.44440 * 5 4 3 24 24 C 1.31528 * 120.88965 * 0.27314 * 23 5 4 25 25 N 1.31897 * 121.98703 * 0.02562 * 24 23 5 26 26 H 1.09003 * 109.47552 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47355 * 300.00095 * 1 2 3 28 28 H 1.09006 * 109.47181 * 59.99705 * 1 2 3 29 29 H 1.08006 * 120.89517 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.58393 * 246.19448 * 9 8 6 31 31 H 1.08996 * 109.58975 * 6.48020 * 9 8 6 32 32 H 1.08998 * 109.49801 * 174.65378 * 10 9 8 33 33 H 1.08999 * 109.49676 * 294.75581 * 10 9 8 34 34 H 1.09000 * 109.41685 * 178.67473 * 11 10 9 35 35 H 1.08991 * 109.42151 * 58.74986 * 11 10 9 36 36 H 0.97001 * 119.99978 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.58390 * 353.37294 * 22 8 6 38 38 H 1.08996 * 109.58969 * 113.79538 * 22 8 6 39 39 H 1.08001 * 119.00751 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2925 -0.0064 5 6 4.0198 2.5565 -0.0005 6 6 5.4966 2.7066 -0.0006 7 8 6.1999 1.7945 -0.3870 8 7 6.0573 3.8548 0.4281 9 6 5.2195 4.9717 0.8857 10 6 5.6738 5.3907 2.2875 11 6 7.1759 5.6985 2.2584 12 6 7.9498 4.4421 1.8522 13 1 7.7372 3.6397 2.5586 14 6 9.4274 4.7384 1.8560 15 1 9.7799 5.7234 2.1241 16 6 10.3291 3.7519 1.5172 17 7 9.8998 2.5525 1.1911 18 14 12.1605 4.1194 1.5213 19 1 12.3811 5.5325 1.9208 20 1 12.8439 3.2196 2.4850 21 1 12.7129 3.8982 0.1606 22 6 7.5178 4.0136 0.4463 23 7 3.2303 3.6303 -0.0005 24 6 1.9210 3.5058 -0.0005 25 7 1.3313 2.3260 0.0000 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0480 0.4013 -0.0110 30 1 5.3258 5.8127 0.2006 31 1 4.1766 4.6566 0.9185 32 1 5.1231 6.2785 2.5982 33 1 5.4827 4.5791 2.9896 34 1 7.4992 6.0198 3.2485 35 1 7.3691 6.4929 1.5376 36 1 10.5341 1.8583 0.9530 37 1 7.9916 3.0655 0.1916 38 1 7.8115 4.7764 -0.2747 39 1 1.3102 4.3965 -0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824746653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:48 Heat of formation + Delta-G solvation = -7.975177 kcal Electronic energy + Delta-G solvation = -23371.696786 eV Core-core repulsion = 19894.654652 eV Total energy + Delta-G solvation = -3477.042134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50837 -39.47032 -38.43586 -36.73613 -33.88863 -32.98135 -31.96848 -31.67390 -29.70892 -27.94756 -25.85952 -24.98765 -24.40200 -23.50420 -21.76390 -20.58929 -19.04663 -18.46204 -17.75504 -16.50603 -16.38870 -16.00122 -15.66888 -15.50360 -15.01065 -14.81086 -14.41332 -14.34169 -13.96064 -13.52834 -13.25906 -12.73045 -12.55435 -12.36058 -12.14773 -11.95447 -11.81689 -11.20786 -10.98458 -10.78707 -10.52962 -10.47595 -10.28103 -10.24146 -9.94070 -9.80158 -9.33092 -9.21554 -9.09712 -8.65900 -8.43111 -7.76724 -5.99817 -4.08346 0.51418 0.84240 2.55753 3.05183 3.30273 3.39044 3.42102 3.45470 3.74279 3.83309 4.06607 4.43297 4.61881 4.87146 4.92692 4.98128 5.14950 5.27789 5.30581 5.44423 5.61773 5.67189 5.84148 5.92648 6.24482 6.36431 6.45467 6.60022 6.67506 6.75050 6.84398 6.89639 6.99876 7.14238 7.25804 7.62434 7.77075 7.86655 7.98307 8.19213 8.37574 8.67938 8.96070 9.57371 11.05641 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.003938 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.035247 B = 7108.464588 C = 7823.885797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.298 6.298 3 C 0.363 3.637 4 C -0.188 4.188 5 C 0.173 3.827 6 C 0.554 3.446 7 O -0.521 6.521 8 N -0.574 5.574 9 C 0.075 3.925 10 C -0.135 4.135 11 C -0.112 4.112 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.881 5.881 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.109 3.891 23 N -0.508 5.508 24 C 0.325 3.675 25 N -0.571 5.571 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.165 0.835 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.263 0.737 37 H 0.123 0.877 38 H 0.048 0.952 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.251 0.280 -1.806 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.175 3.825 4 C -0.211 4.211 5 C 0.029 3.971 6 C 0.337 3.663 7 O -0.397 6.397 8 N -0.305 5.305 9 C -0.048 4.048 10 C -0.173 4.173 11 C -0.149 4.149 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.519 5.519 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.011 4.011 23 N -0.230 5.230 24 C 0.037 3.963 25 N -0.302 5.302 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.183 0.817 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.196 0.079 -2.076 19.308 hybrid contribution 1.155 -0.368 0.041 1.213 sum -18.041 -0.288 -2.035 18.158 Atomic orbital electron populations 1.22978 0.76512 1.03471 1.02797 1.86271 1.23466 1.23738 1.86663 1.20026 0.89226 0.85102 0.88179 1.21929 0.92550 1.00750 1.05913 1.21899 0.95872 0.88319 0.90993 1.17719 0.84471 0.83749 0.80363 1.90831 1.61232 1.39684 1.47968 1.48417 1.09694 1.12703 1.59650 1.22728 0.97947 0.89299 0.94828 1.22038 0.98350 1.00221 0.96739 1.21700 0.92737 1.00056 1.00433 1.18969 0.94288 0.92417 0.92190 0.95324 1.21121 0.90280 0.97530 1.46861 0.92243 1.25062 0.99035 0.95033 0.94959 1.69887 1.34327 1.02405 1.45246 0.86525 0.85412 0.78334 0.77667 1.19793 1.21022 1.20961 1.22438 0.73809 1.04845 0.99963 1.68528 1.05956 1.31842 1.16660 1.24850 0.88591 0.93834 0.88990 1.68012 1.41965 0.99300 1.20898 0.88155 0.91877 0.91917 0.81744 0.92107 0.85504 0.92243 0.92685 0.93185 0.93162 0.92677 0.85879 0.93412 0.77867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.41 101.05 1.05 1.34 16 2 O -0.30 -3.44 10.49 -18.22 -0.19 -3.63 16 3 C 0.36 4.72 7.54 -16.68 -0.13 4.59 16 4 C -0.19 -2.79 9.68 -38.72 -0.37 -3.17 16 5 C 0.17 2.84 6.48 -82.70 -0.54 2.30 16 6 C 0.55 11.45 7.64 -12.06 -0.09 11.36 16 7 O -0.52 -12.61 16.02 5.38 0.09 -12.52 16 8 N -0.57 -11.90 2.97 -173.66 -0.52 -12.42 16 9 C 0.07 1.26 6.02 -3.71 -0.02 1.24 16 10 C -0.14 -2.28 6.11 -26.45 -0.16 -2.45 16 11 C -0.11 -2.26 5.11 -26.52 -0.14 -2.39 16 12 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.52 -14.07 8.56 -34.44 -0.29 -14.36 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.88 -25.59 11.39 55.43 0.63 -24.96 16 18 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.11 2.66 5.40 -3.71 -0.02 2.64 16 23 N -0.51 -7.02 6.52 -11.20 -0.07 -7.09 16 24 C 0.32 3.54 12.27 -92.29 -1.13 2.41 16 25 N -0.57 -6.71 9.36 -14.64 -0.14 -6.85 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.12 -51.93 -0.42 0.03 16 29 H 0.16 2.45 7.87 -52.48 -0.41 2.04 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.13 1.92 3.95 -77.47 -0.31 1.61 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.12 3.47 5.12 -51.93 -0.27 3.20 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -31.61 322.84 -7.68 -39.28 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.17 Total: 1.20 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.15 Total: 5.91 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.10 Total: -51.32 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.10 Total: -16.16 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.61 -7.68 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.307 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds