Wall clock time and date at job start Tue Mar 31 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35509 * 117.00378 * 2 1 4 4 C 1.39638 * 120.50018 * 180.30315 * 3 2 1 5 5 C 1.39148 * 118.21146 * 180.25832 * 4 3 2 6 6 C 1.48443 * 120.51899 * 179.71724 * 5 4 3 7 7 O 1.21483 * 120.00218 * 21.27099 * 6 5 4 8 8 N 1.34776 * 120.00134 * 201.27021 * 6 5 4 9 9 C 1.46928 * 120.62577 * 359.38223 * 8 6 5 10 10 C 1.53194 * 108.89209 * 126.34330 * 9 8 6 11 11 C 1.53355 * 109.14824 * 54.57618 * 10 9 8 12 12 C 1.53046 * 109.60569 * 298.70901 * 11 10 9 13 13 H 1.09001 * 109.49678 * 301.42690 * 12 11 10 14 14 C 1.50702 * 109.49544 * 181.32934 * 12 11 10 15 15 H 1.08002 * 120.00005 * 0.15933 * 14 12 11 16 16 C 1.37879 * 119.99904 * 180.16892 * 14 12 11 17 17 N 1.31510 * 119.99651 * 359.97438 * 16 14 12 18 18 Si 1.86790 * 119.99867 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47599 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47557 * 119.99774 * 18 16 14 21 21 H 1.48507 * 109.47240 * 239.99367 * 18 16 14 22 22 C 1.46923 * 120.63463 * 179.40466 * 8 6 5 23 23 N 1.33277 * 118.96088 * 359.44440 * 5 4 3 24 24 C 1.31528 * 120.88965 * 0.27314 * 23 5 4 25 25 N 1.31897 * 121.98703 * 0.02562 * 24 23 5 26 26 H 1.09003 * 109.47552 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47355 * 300.00095 * 1 2 3 28 28 H 1.09006 * 109.47181 * 59.99705 * 1 2 3 29 29 H 1.08006 * 120.89517 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.58393 * 246.19448 * 9 8 6 31 31 H 1.08996 * 109.58975 * 6.48020 * 9 8 6 32 32 H 1.08998 * 109.49801 * 174.65378 * 10 9 8 33 33 H 1.08999 * 109.49676 * 294.75581 * 10 9 8 34 34 H 1.09000 * 109.41685 * 178.67473 * 11 10 9 35 35 H 1.08991 * 109.42151 * 58.74986 * 11 10 9 36 36 H 0.97001 * 119.99978 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.58390 * 353.37294 * 22 8 6 38 38 H 1.08996 * 109.58969 * 113.79538 * 22 8 6 39 39 H 1.08001 * 119.00751 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2925 -0.0064 5 6 4.0198 2.5565 -0.0005 6 6 5.4966 2.7066 -0.0006 7 8 6.1999 1.7945 -0.3870 8 7 6.0573 3.8548 0.4281 9 6 5.2195 4.9717 0.8857 10 6 5.6738 5.3907 2.2875 11 6 7.1759 5.6985 2.2584 12 6 7.9498 4.4421 1.8522 13 1 7.7372 3.6397 2.5586 14 6 9.4274 4.7384 1.8560 15 1 9.7799 5.7234 2.1241 16 6 10.3291 3.7519 1.5172 17 7 9.8998 2.5525 1.1911 18 14 12.1605 4.1194 1.5213 19 1 12.3811 5.5325 1.9208 20 1 12.8439 3.2196 2.4850 21 1 12.7129 3.8982 0.1606 22 6 7.5178 4.0136 0.4463 23 7 3.2303 3.6303 -0.0005 24 6 1.9210 3.5058 -0.0005 25 7 1.3313 2.3260 0.0000 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0480 0.4013 -0.0110 30 1 5.3258 5.8127 0.2006 31 1 4.1766 4.6566 0.9185 32 1 5.1231 6.2785 2.5982 33 1 5.4827 4.5791 2.9896 34 1 7.4992 6.0198 3.2485 35 1 7.3691 6.4929 1.5376 36 1 10.5341 1.8583 0.9530 37 1 7.9916 3.0655 0.1916 38 1 7.8115 4.7764 -0.2747 39 1 1.3102 4.3965 -0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824746653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:47 Heat of formation + Delta-G solvation = -29.355035 kcal Electronic energy + Delta-G solvation = -23372.623886 eV Core-core repulsion = 19894.654652 eV Total energy + Delta-G solvation = -3477.969234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59695 -40.90941 -39.49000 -38.43369 -35.48344 -34.47412 -33.36824 -33.00041 -31.50162 -28.77383 -27.43451 -26.70581 -25.44916 -24.86983 -23.43245 -22.02660 -20.59077 -19.47436 -19.19778 -18.32551 -17.50510 -17.23186 -17.05271 -16.75942 -16.49529 -16.28599 -15.87604 -15.45613 -15.22408 -14.89532 -14.84598 -14.53612 -14.24351 -13.84585 -13.53484 -13.01648 -12.90405 -12.83065 -12.58666 -12.28679 -12.26755 -12.08900 -11.73691 -11.65730 -11.46732 -11.44414 -11.08194 -10.96167 -10.54324 -10.38342 -9.98344 -9.48296 -8.11209 -6.28272 -0.67206 -0.16042 1.40135 1.42267 1.52746 1.54415 1.68233 2.06604 2.42377 2.59265 2.81854 2.98150 3.17197 3.44417 3.73168 4.00033 4.21409 4.24030 4.38937 4.41038 4.42154 4.47128 4.63927 4.69347 4.77509 4.86578 4.88885 5.09592 5.15160 5.25992 5.34170 5.35912 5.54455 5.60314 5.64487 5.88008 5.93745 5.96958 6.31353 6.50264 6.77153 6.84118 7.06804 7.41977 8.92687 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.003938 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.035247 B = 7108.464588 C = 7823.885797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.372 3.628 4 C -0.200 4.200 5 C 0.164 3.836 6 C 0.546 3.454 7 O -0.572 6.572 8 N -0.580 5.580 9 C 0.072 3.928 10 C -0.127 4.127 11 C -0.106 4.106 12 C 0.039 3.961 13 H -0.013 1.013 14 C -0.534 4.534 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.916 5.916 18 Si 0.960 3.040 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.122 3.878 23 N -0.515 5.515 24 C 0.339 3.661 25 N -0.560 5.560 26 H 0.127 0.873 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.260 0.740 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.029 2.216 -1.567 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.211 6.211 3 C 0.183 3.817 4 C -0.225 4.225 5 C 0.022 3.978 6 C 0.331 3.669 7 O -0.451 6.451 8 N -0.309 5.309 9 C -0.049 4.049 10 C -0.165 4.165 11 C -0.144 4.144 12 C 0.020 3.980 13 H 0.005 0.995 14 C -0.573 4.573 15 H 0.081 0.919 16 C -0.190 4.190 17 N -0.555 5.555 18 Si 0.785 3.215 19 H -0.184 1.184 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.000 4.000 23 N -0.237 5.237 24 C 0.053 3.947 25 N -0.291 5.291 26 H 0.145 0.855 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.170 0.830 30 H 0.094 0.906 31 H 0.169 0.831 32 H 0.122 0.878 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -22.023 2.048 -1.821 22.193 hybrid contribution 1.863 -1.016 -0.039 2.123 sum -20.160 1.033 -1.860 20.272 Atomic orbital electron populations 1.23321 0.74137 1.05554 1.03360 1.86274 1.25765 1.23056 1.85998 1.19970 0.88498 0.86073 0.87141 1.21829 0.93804 0.99854 1.07028 1.21105 0.93478 0.89792 0.93447 1.18345 0.86525 0.82845 0.79136 1.90787 1.63167 1.41235 1.49955 1.48446 1.08577 1.14119 1.59739 1.23081 0.98483 0.88385 0.94912 1.22013 0.96133 1.01736 0.96629 1.21598 0.94683 0.97599 1.00503 1.18903 0.94298 0.93390 0.91416 0.99517 1.21534 0.91823 0.97595 1.46307 0.91850 1.25910 1.03669 0.94795 0.94655 1.70082 1.35598 1.03404 1.46371 0.85478 0.79858 0.78634 0.77524 1.18430 1.20862 1.20820 1.21881 0.76428 1.02247 0.99452 1.68355 1.07163 1.30607 1.17574 1.25845 0.87635 0.95059 0.86166 1.68185 1.41317 0.99141 1.20507 0.85490 0.91250 0.91281 0.83009 0.90597 0.83118 0.87782 0.93798 0.92974 0.92339 0.93059 0.90202 0.93853 0.72848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.41 113.37 1.18 1.55 16 2 O -0.31 -6.58 10.49 -88.11 -0.92 -7.50 16 3 C 0.37 9.06 7.54 84.91 0.64 9.70 16 4 C -0.20 -6.02 9.68 22.83 0.22 -5.80 16 5 C 0.16 5.39 6.48 41.87 0.27 5.66 16 6 C 0.55 23.59 7.64 86.96 0.66 24.26 16 7 O -0.57 -29.79 16.02 -3.66 -0.06 -29.85 16 8 N -0.58 -24.63 2.97 -821.64 -2.44 -27.07 16 9 C 0.07 2.30 6.02 86.36 0.52 2.82 16 10 C -0.13 -4.02 6.11 30.78 0.19 -3.83 16 11 C -0.11 -4.22 5.11 30.73 0.16 -4.06 16 12 C 0.04 2.01 2.25 -11.46 -0.03 1.99 16 13 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 14 C -0.53 -29.70 8.56 25.60 0.22 -29.48 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 16 C 0.01 0.51 5.30 84.66 0.45 0.96 16 17 N -0.92 -56.02 11.39 21.45 0.24 -55.78 16 18 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C 0.12 6.23 5.40 86.36 0.47 6.69 16 23 N -0.51 -12.95 6.52 -189.36 -1.24 -14.18 16 24 C 0.34 6.01 12.27 180.93 2.22 8.23 16 25 N -0.56 -11.29 9.36 -313.00 -2.93 -14.23 16 26 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 28 H 0.07 0.79 8.12 -2.38 -0.02 0.77 16 29 H 0.15 4.85 7.87 -2.91 -0.02 4.82 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.15 4.13 3.95 -52.82 -0.21 3.92 16 32 H 0.10 2.43 8.14 -2.39 -0.02 2.42 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.08 4.83 5.12 -2.39 -0.01 4.82 16 38 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.26 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -74.03 322.84 2.71 -71.32 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.87 Total: 12.01 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 7.17 Total: 18.70 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -6.37 Total: -111.25 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.98 Total: -37.35 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -74.03 2.71 -71.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.960 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds