Wall clock time and date at job start Tue Mar 31 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50706 * 119.99476 * 2 1 4 4 C 1.52997 * 109.46988 * 294.99793 * 3 2 1 5 5 C 1.53006 * 109.46898 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47009 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99983 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99750 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00081 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99687 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47506 * 90.00143 * 10 8 6 12 12 H 1.48501 * 109.46990 * 209.99909 * 10 8 6 13 13 H 1.48497 * 109.47188 * 329.99689 * 10 8 6 14 14 N 1.28012 * 120.00434 * 179.97438 * 2 1 3 15 15 N 1.40105 * 119.99853 * 0.02562 * 14 2 1 16 16 C 1.39599 * 120.00032 * 180.02562 * 15 14 2 17 17 C 1.38958 * 120.08098 * 180.02562 * 16 15 14 18 18 C 1.38091 * 119.92238 * 180.02562 * 17 16 15 19 19 C 1.38300 * 120.07627 * 0.02562 * 18 17 16 20 20 N 1.48020 * 119.91820 * 180.02562 * 19 18 17 21 21 O 1.21803 * 119.99894 * 359.97438 * 20 19 18 22 22 O 1.21799 * 119.99903 * 179.72349 * 20 19 18 23 23 C 1.38297 * 120.16161 * 0.26832 * 19 18 17 24 24 C 1.38084 * 120.07919 * 359.45658 * 23 19 18 25 25 H 1.08998 * 109.47381 * 270.00101 * 1 2 3 26 26 H 1.09004 * 109.47198 * 30.00511 * 1 2 3 27 27 H 1.09004 * 109.46868 * 150.00332 * 1 2 3 28 28 H 1.09003 * 109.47171 * 54.99896 * 3 2 1 29 29 H 1.09002 * 109.46746 * 174.99735 * 3 2 1 30 30 H 1.09003 * 109.47248 * 300.00056 * 4 3 2 31 31 H 1.08992 * 109.47371 * 60.00168 * 4 3 2 32 32 H 1.09003 * 109.46848 * 299.99850 * 5 4 3 33 33 H 1.09002 * 109.47159 * 59.99744 * 5 4 3 34 34 H 0.97008 * 119.99963 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99614 * 359.97438 * 15 14 2 36 36 H 1.07998 * 120.04031 * 359.97438 * 17 16 15 37 37 H 1.07995 * 119.96123 * 179.97438 * 18 17 16 38 38 H 1.08005 * 119.96049 * 179.70776 * 23 19 18 39 39 H 1.07999 * 120.04129 * 180.25054 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 1.9874 2.0516 -1.3074 5 6 2.7529 3.3765 -1.3076 6 6 2.4845 4.1114 -2.5956 7 1 1.8328 3.6772 -3.3394 8 6 3.0700 5.3386 -2.8239 9 7 3.8624 5.8679 -1.9176 10 14 2.7368 6.2498 -4.4201 11 1 1.5496 7.1258 -4.2516 12 1 3.9174 7.0787 -4.7727 13 1 2.4786 5.2695 -5.5052 14 7 2.1472 -1.1086 0.0005 15 7 1.4467 -2.3220 0.0005 16 6 2.1448 -3.5309 0.0016 17 6 1.4517 -4.7353 0.0010 18 6 2.1455 -5.9293 0.0026 19 6 3.5285 -5.9272 0.0053 20 7 4.2687 -7.2091 0.0065 21 8 3.6597 -8.2639 0.0055 22 8 5.4867 -7.2090 0.0037 23 6 4.2216 -4.7305 0.0120 24 6 3.5345 -3.5327 0.0047 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 1.9316 1.9146 0.8418 29 1 3.3287 1.1080 0.0896 30 1 2.3163 1.4422 -2.1492 31 1 0.9192 2.2488 -1.3970 32 1 2.4243 3.9860 -0.4658 33 1 3.8211 3.1789 -1.2182 34 1 4.2741 6.7315 -2.0781 35 1 0.4767 -2.3219 0.0005 36 1 0.3717 -4.7376 0.0002 37 1 1.6076 -6.8657 0.0027 38 1 5.3016 -4.7327 0.0188 39 1 4.0764 -2.5985 0.0058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841602559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:47 Heat of formation + Delta-G solvation = 43.362574 kcal Electronic energy + Delta-G solvation = -21293.997694 eV Core-core repulsion = 17819.181733 eV Total energy + Delta-G solvation = -3474.815962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18271 -40.01761 -38.25070 -36.58756 -35.32824 -33.62214 -32.02094 -31.65680 -30.18044 -28.61307 -27.47780 -25.71913 -23.90104 -23.45729 -22.16917 -20.55980 -19.55910 -19.42586 -18.59921 -18.06629 -17.54832 -16.72000 -16.23504 -15.20053 -15.15299 -14.88507 -14.54191 -14.22020 -14.14851 -13.99611 -13.76763 -13.35359 -12.56444 -12.39679 -12.15435 -11.93054 -11.84791 -11.61050 -11.52609 -11.24788 -11.20125 -10.95612 -10.90839 -10.64243 -10.30429 -10.17855 -9.83340 -9.71992 -9.47627 -9.18446 -8.43106 -8.08287 -6.08155 -4.11008 -0.20958 0.72363 1.21156 1.40465 1.99452 2.20849 3.13747 3.25936 3.33068 3.35726 4.09702 4.26344 4.36764 4.42363 4.45692 4.55465 4.74208 4.87899 5.03424 5.14691 5.28027 5.33487 5.38756 5.56969 5.61680 5.63958 5.67164 5.78883 5.96806 6.04258 6.26822 6.32870 6.52572 6.64419 6.67262 6.94609 7.56780 7.61316 7.69273 7.88245 7.90742 8.32276 8.95780 9.53657 11.03004 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025696 B = 0.002255 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.388811 B =12411.575234 C =12982.452907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 C -0.067 4.067 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.523 4.523 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.270 5.270 15 N -0.580 5.580 16 C 0.283 3.717 17 C -0.197 4.197 18 C -0.007 4.007 19 C -0.107 4.107 20 N 0.042 4.958 21 O -0.181 6.181 22 O -0.176 6.176 23 C -0.012 4.012 24 C -0.165 4.165 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.391 0.609 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -19.001 6.553 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.063 4.063 3 C -0.107 4.107 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.561 4.561 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.075 5.075 15 N -0.296 5.296 16 C 0.176 3.824 17 C -0.221 4.221 18 C -0.027 4.027 19 C -0.193 4.193 20 N 0.556 4.444 21 O -0.393 6.393 22 O -0.389 6.389 23 C -0.033 4.033 24 C -0.187 4.187 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.232 0.768 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.170 0.830 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.584 -18.632 6.598 20.833 hybrid contribution -1.281 0.469 -0.903 1.635 sum -7.865 -18.163 5.695 20.596 Atomic orbital electron populations 1.21418 0.93023 1.04310 1.03576 1.25460 0.94680 0.94051 0.92127 1.20757 0.99969 0.88518 1.01407 1.21650 1.00815 0.98472 0.93251 1.19106 0.95371 0.89854 0.97237 1.21213 1.28585 1.03435 1.02898 0.92735 1.25017 0.95118 0.97559 0.96721 1.69952 1.31178 1.17933 1.34253 0.86604 0.77796 0.79823 0.83844 1.20654 1.21165 1.19913 1.74337 1.24591 0.90982 1.17585 1.45794 1.06975 1.01152 1.75725 1.17913 0.91967 0.84048 0.88434 1.20515 1.00540 0.89419 1.11578 1.20635 0.90935 0.99558 0.91575 1.20852 0.92399 0.83397 1.22639 1.43543 1.01124 1.02824 0.96899 1.94503 1.70054 1.20179 1.54548 1.94524 0.95765 1.94333 1.54294 1.20859 1.01777 0.89231 0.91399 1.20835 0.92138 0.98698 1.07045 0.89737 0.88530 0.92050 0.89424 0.89949 0.93066 0.92904 0.96354 0.96331 0.92915 0.76769 0.83912 0.83031 0.82953 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.46 36.01 0.34 -1.06 16 2 C 0.13 1.50 6.55 -78.91 -0.52 0.98 16 3 C -0.07 -0.93 5.60 -27.88 -0.16 -1.08 16 4 C -0.10 -1.82 5.03 -26.73 -0.13 -1.95 16 5 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 6 C -0.52 -14.03 9.11 -34.44 -0.31 -14.35 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 10 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 N -0.27 -3.26 10.22 35.60 0.36 -2.90 16 15 N -0.58 -5.60 6.28 32.42 0.20 -5.40 16 16 C 0.28 2.70 6.72 -83.78 -0.56 2.14 16 17 C -0.20 -1.49 9.90 -39.37 -0.39 -1.88 16 18 C -0.01 -0.06 9.55 -39.61 -0.38 -0.44 16 19 C -0.11 -1.15 6.85 -79.90 -0.55 -1.70 16 20 N 0.04 0.55 4.45 33.99 0.15 0.70 16 21 O -0.18 -2.44 18.44 -29.46 -0.54 -2.98 16 22 O -0.18 -2.46 18.44 -29.46 -0.54 -3.00 16 23 C -0.01 -0.12 9.55 -39.62 -0.38 -0.50 16 24 C -0.16 -1.68 9.51 -39.36 -0.37 -2.06 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.87 6.91 -51.93 -0.36 0.51 16 27 H 0.06 0.44 6.31 -51.93 -0.33 0.11 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.88 7.01 -51.93 -0.36 0.51 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.39 2.85 6.40 -182.60 -1.17 1.68 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.15 1.05 7.60 -52.49 -0.40 0.65 16 38 H 0.15 1.36 7.60 -52.48 -0.40 0.96 16 39 H 0.16 1.68 7.36 -52.49 -0.39 1.29 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -30.93 342.37 -9.04 -39.98 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.90 Total: -2.24 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -3.65 Total: -20.05 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 1.46 Total: -32.77 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -1.09 Total: -5.98 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.93 -9.04 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841602559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.339 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds