Wall clock time and date at job start Tue Mar 31 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50706 * 119.99476 * 2 1 4 4 C 1.52997 * 109.46988 * 294.99793 * 3 2 1 5 5 C 1.53006 * 109.46898 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47009 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99983 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99750 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00081 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99687 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47506 * 90.00143 * 10 8 6 12 12 H 1.48501 * 109.46990 * 209.99909 * 10 8 6 13 13 H 1.48497 * 109.47188 * 329.99689 * 10 8 6 14 14 N 1.28012 * 120.00434 * 179.97438 * 2 1 3 15 15 N 1.40105 * 119.99853 * 0.02562 * 14 2 1 16 16 C 1.39599 * 120.00032 * 180.02562 * 15 14 2 17 17 C 1.38958 * 120.08098 * 180.02562 * 16 15 14 18 18 C 1.38091 * 119.92238 * 180.02562 * 17 16 15 19 19 C 1.38300 * 120.07627 * 0.02562 * 18 17 16 20 20 N 1.48020 * 119.91820 * 180.02562 * 19 18 17 21 21 O 1.21803 * 119.99894 * 359.97438 * 20 19 18 22 22 O 1.21799 * 119.99903 * 179.72349 * 20 19 18 23 23 C 1.38297 * 120.16161 * 0.26832 * 19 18 17 24 24 C 1.38084 * 120.07919 * 359.45658 * 23 19 18 25 25 H 1.08998 * 109.47381 * 270.00101 * 1 2 3 26 26 H 1.09004 * 109.47198 * 30.00511 * 1 2 3 27 27 H 1.09004 * 109.46868 * 150.00332 * 1 2 3 28 28 H 1.09003 * 109.47171 * 54.99896 * 3 2 1 29 29 H 1.09002 * 109.46746 * 174.99735 * 3 2 1 30 30 H 1.09003 * 109.47248 * 300.00056 * 4 3 2 31 31 H 1.08992 * 109.47371 * 60.00168 * 4 3 2 32 32 H 1.09003 * 109.46848 * 299.99850 * 5 4 3 33 33 H 1.09002 * 109.47159 * 59.99744 * 5 4 3 34 34 H 0.97008 * 119.99963 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99614 * 359.97438 * 15 14 2 36 36 H 1.07998 * 120.04031 * 359.97438 * 17 16 15 37 37 H 1.07995 * 119.96123 * 179.97438 * 18 17 16 38 38 H 1.08005 * 119.96049 * 179.70776 * 23 19 18 39 39 H 1.07999 * 120.04129 * 180.25054 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 1.9874 2.0516 -1.3074 5 6 2.7529 3.3765 -1.3076 6 6 2.4845 4.1114 -2.5956 7 1 1.8328 3.6772 -3.3394 8 6 3.0700 5.3386 -2.8239 9 7 3.8624 5.8679 -1.9176 10 14 2.7368 6.2498 -4.4201 11 1 1.5496 7.1258 -4.2516 12 1 3.9174 7.0787 -4.7727 13 1 2.4786 5.2695 -5.5052 14 7 2.1472 -1.1086 0.0005 15 7 1.4467 -2.3220 0.0005 16 6 2.1448 -3.5309 0.0016 17 6 1.4517 -4.7353 0.0010 18 6 2.1455 -5.9293 0.0026 19 6 3.5285 -5.9272 0.0053 20 7 4.2687 -7.2091 0.0065 21 8 3.6597 -8.2639 0.0055 22 8 5.4867 -7.2090 0.0037 23 6 4.2216 -4.7305 0.0120 24 6 3.5345 -3.5327 0.0047 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 1.9316 1.9146 0.8418 29 1 3.3287 1.1080 0.0896 30 1 2.3163 1.4422 -2.1492 31 1 0.9192 2.2488 -1.3970 32 1 2.4243 3.9860 -0.4658 33 1 3.8211 3.1789 -1.2182 34 1 4.2741 6.7315 -2.0781 35 1 0.4767 -2.3219 0.0005 36 1 0.3717 -4.7376 0.0002 37 1 1.6076 -6.8657 0.0027 38 1 5.3016 -4.7327 0.0188 39 1 4.0764 -2.5985 0.0058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841602559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:47 Heat of formation + Delta-G solvation = 27.404887 kcal Electronic energy + Delta-G solvation = -21294.689672 eV Core-core repulsion = 17819.181733 eV Total energy + Delta-G solvation = -3475.507939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.12658 -40.78913 -39.13054 -37.57923 -36.56837 -35.10893 -33.53045 -32.39608 -31.22915 -29.38994 -28.94285 -26.73909 -25.40499 -24.30930 -23.08604 -22.11408 -20.50009 -20.28520 -19.56003 -18.90359 -18.50429 -18.36592 -17.45194 -16.52824 -16.05051 -15.85787 -15.66735 -15.40572 -15.11146 -14.75207 -14.56364 -14.39100 -14.03218 -13.67627 -13.24984 -13.12171 -12.91896 -12.68761 -12.64179 -12.52334 -12.43555 -12.40070 -12.24416 -12.23172 -11.52090 -11.40203 -11.25889 -11.03398 -10.90231 -10.52510 -10.42402 -8.87166 -8.18301 -6.28395 -1.11961 0.03340 0.31895 0.53328 1.12191 1.41156 1.42091 1.44049 1.52697 2.39480 2.42180 3.15558 3.39113 3.55605 3.59232 3.69255 3.84134 3.99754 4.18625 4.29908 4.38185 4.48295 4.60215 4.62334 4.69325 4.77846 4.84548 4.95888 5.00828 5.06319 5.20142 5.22996 5.31072 5.38944 5.48266 5.56354 5.80296 5.89863 5.94844 6.27546 6.59032 6.89717 7.09638 7.40837 8.93092 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025696 B = 0.002255 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.388811 B =12411.575234 C =12982.452907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 C -0.060 4.060 4 C -0.087 4.087 5 C 0.022 3.978 6 C -0.541 4.541 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.265 1.265 14 N -0.292 5.292 15 N -0.571 5.571 16 C 0.277 3.723 17 C -0.177 4.177 18 C -0.002 4.002 19 C -0.122 4.122 20 N 0.044 4.956 21 O -0.185 6.185 22 O -0.213 6.213 23 C -0.015 4.015 24 C -0.176 4.176 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.001 0.999 33 H -0.010 1.010 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.182 0.818 37 H 0.172 0.828 38 H 0.154 0.846 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -19.735 6.113 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.065 4.065 3 C -0.099 4.099 4 C -0.126 4.126 5 C -0.016 4.016 6 C -0.579 4.579 7 H 0.078 0.922 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.190 1.190 14 N -0.097 5.097 15 N -0.289 5.289 16 C 0.170 3.830 17 C -0.200 4.200 18 C -0.022 4.022 19 C -0.208 4.208 20 N 0.553 4.447 21 O -0.398 6.398 22 O -0.418 6.418 23 C -0.035 4.035 24 C -0.199 4.199 25 H 0.122 0.878 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.019 0.981 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.250 0.750 36 H 0.199 0.801 37 H 0.190 0.810 38 H 0.171 0.829 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.341 -19.379 6.156 22.377 hybrid contribution -0.457 0.703 -0.734 1.114 sum -9.798 -18.676 5.422 21.776 Atomic orbital electron populations 1.21463 0.90403 1.05049 1.05078 1.25185 0.96123 0.92743 0.92469 1.20491 0.99743 0.90021 0.99674 1.21363 1.00580 0.95532 0.95133 1.19034 0.94432 0.92611 0.95484 1.21720 1.28257 1.03844 1.04067 0.92189 1.25933 0.94976 0.98728 1.00227 1.70083 1.32401 1.18439 1.36361 0.85527 0.77762 0.78563 0.79688 1.19641 1.21123 1.18956 1.74235 1.26043 0.91961 1.17474 1.45650 1.07635 1.00241 1.75422 1.18132 0.91787 0.84758 0.88293 1.20838 1.02194 0.87789 1.09194 1.20948 0.89898 1.00923 0.90474 1.21063 0.93294 0.82248 1.24239 1.43851 1.01047 1.03471 0.96374 1.94470 1.69865 1.21102 1.54380 1.94518 0.96574 1.94635 1.56103 1.20879 1.02048 0.89174 0.91387 1.20794 0.92912 0.98202 1.07964 0.87751 0.88868 0.90202 0.88351 0.91348 0.93864 0.91360 0.98082 0.99194 0.92869 0.75022 0.80109 0.81021 0.82858 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.46 71.24 0.67 -1.54 16 2 C 0.13 2.70 6.55 46.53 0.30 3.00 16 3 C -0.06 -1.62 5.60 29.85 0.17 -1.45 16 4 C -0.09 -3.05 5.03 30.60 0.15 -2.90 16 5 C 0.02 1.05 4.97 29.85 0.15 1.20 16 6 C -0.54 -29.22 9.11 25.60 0.23 -28.98 16 7 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 8 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 9 N -0.93 -55.09 13.29 21.45 0.28 -54.81 16 10 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 14 N -0.29 -6.54 10.22 -41.19 -0.42 -6.96 16 15 N -0.57 -9.32 6.28 -51.35 -0.32 -9.64 16 16 C 0.28 4.58 6.72 38.25 0.26 4.84 16 17 C -0.18 -2.01 9.90 22.41 0.22 -1.79 16 18 C 0.00 -0.03 9.55 22.25 0.21 0.18 16 19 C -0.12 -2.51 6.85 36.40 0.25 -2.26 16 20 N 0.04 1.14 4.45 -46.39 -0.21 0.93 16 21 O -0.19 -4.87 18.44 18.88 0.35 -4.52 16 22 O -0.21 -6.14 18.44 18.89 0.35 -5.79 16 23 C -0.01 -0.29 9.55 22.25 0.21 -0.08 16 24 C -0.18 -3.46 9.51 22.41 0.21 -3.25 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 1.39 6.91 -2.38 -0.02 1.37 16 27 H 0.08 0.80 6.31 -2.39 -0.02 0.79 16 28 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.17 7.01 -2.39 -0.02 2.15 16 32 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 14.64 8.31 -92.70 -0.77 13.86 16 35 H 0.41 4.22 6.40 -213.32 -1.36 2.85 16 36 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 37 H 0.17 1.80 7.60 -2.91 -0.02 1.77 16 38 H 0.15 2.88 7.60 -2.91 -0.02 2.86 16 39 H 0.15 3.17 7.36 -2.91 -0.02 3.15 16 Total: -1.00 -68.29 342.37 5.28 -63.01 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -0.29 Total: 5.54 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 3.51 Total: -32.62 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -0.67 Total: -70.48 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.70 Total: -10.32 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -68.29 5.28 -63.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841602559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.419 kcal (2) G-P(sol) polarization free energy of solvation -68.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds