Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50694 * 119.99907 * 2 1 4 4 C 1.52998 * 109.47696 * 295.00441 * 3 2 1 5 5 C 1.52994 * 109.47575 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47124 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00164 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99941 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99874 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00114 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47412 * 89.99492 * 10 8 6 12 12 H 1.48508 * 109.47036 * 209.99546 * 10 8 6 13 13 H 1.48501 * 109.46911 * 329.99315 * 10 8 6 14 14 N 1.28019 * 119.99876 * 180.02562 * 2 1 3 15 15 N 1.40095 * 120.00197 * 359.97438 * 14 2 1 16 16 C 1.38450 * 119.99917 * 179.97438 * 15 14 2 17 17 C 1.39441 * 119.53389 * 180.02562 * 16 15 14 18 18 C 1.36835 * 119.37996 * 180.02562 * 17 16 15 19 19 C 1.40421 * 118.48976 * 359.97438 * 18 17 16 20 20 C 1.47394 * 120.47574 * 179.97438 * 19 18 17 21 21 O 1.21511 * 120.00268 * 359.97438 * 20 19 18 22 22 O 1.34763 * 119.99704 * 180.02562 * 20 19 18 23 23 C 1.39646 * 119.04002 * 0.02562 * 19 18 17 24 24 N 1.31632 * 120.51859 * 0.02562 * 23 19 18 25 25 H 1.09002 * 109.47122 * 269.99788 * 1 2 3 26 26 H 1.08997 * 109.46896 * 29.99673 * 1 2 3 27 27 H 1.08996 * 109.46852 * 149.99853 * 1 2 3 28 28 H 1.09004 * 109.47299 * 55.00396 * 3 2 1 29 29 H 1.09001 * 109.47201 * 174.99851 * 3 2 1 30 30 H 1.09004 * 109.46709 * 300.00316 * 4 3 2 31 31 H 1.09001 * 109.47277 * 59.99457 * 4 3 2 32 32 H 1.08996 * 109.47012 * 299.99354 * 5 4 3 33 33 H 1.09000 * 109.47297 * 59.99991 * 5 4 3 34 34 H 0.96999 * 119.99793 * 179.97438 * 9 8 6 35 35 H 0.96998 * 119.99736 * 0.02562 * 15 14 2 36 36 H 1.08002 * 120.30972 * 0.27097 * 17 16 15 37 37 H 1.07998 * 120.75080 * 180.02562 * 18 17 16 38 38 H 0.96702 * 116.99497 * 179.97438 * 22 20 19 39 39 H 1.08007 * 119.73821 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9875 2.0517 -1.3072 5 6 2.7530 3.3764 -1.3075 6 6 2.4846 4.1114 -2.5954 7 1 1.8328 3.6774 -3.3392 8 6 3.0702 5.3386 -2.8237 9 7 2.8363 5.9798 -3.9479 10 14 4.1969 6.0897 -1.5370 11 1 5.5942 5.6542 -1.7877 12 1 4.1186 7.5707 -1.6144 13 1 3.7735 5.6415 -0.1861 14 7 2.1471 -1.1087 -0.0005 15 7 1.4467 -2.3220 -0.0005 16 6 2.1389 -3.5210 -0.0016 17 6 1.4320 -4.7229 -0.0021 18 6 2.1194 -5.9060 -0.0026 19 6 3.5230 -5.8652 -0.0032 20 6 4.3071 -7.1132 -0.0032 21 8 3.7394 -8.1875 -0.0022 22 8 5.6538 -7.0628 -0.0032 23 6 4.1651 -4.6251 -0.0026 24 7 3.4654 -3.5101 -0.0011 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.9317 1.9144 0.8419 29 1 3.3288 1.1079 0.0896 30 1 2.3163 1.4423 -2.1491 31 1 0.9193 2.2489 -1.3968 32 1 2.4246 3.9859 -0.4657 33 1 3.8212 3.1788 -1.2182 34 1 3.2481 6.8433 -4.1084 35 1 0.4767 -2.3219 -0.0005 36 1 0.3520 -4.7199 -0.0061 37 1 1.5942 -6.8497 -0.0035 38 1 6.1247 -7.9074 -0.0028 39 1 5.2442 -4.5806 -0.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841633118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -23.517882 kcal Electronic energy + Delta-G solvation = -21310.499418 eV Core-core repulsion = 17832.783302 eV Total energy + Delta-G solvation = -3477.716116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98361 -39.83325 -38.22548 -36.37556 -35.28140 -33.50757 -32.85036 -31.95176 -30.26282 -28.44787 -27.72407 -24.75781 -24.14210 -23.21625 -21.69191 -20.30246 -19.53554 -18.43244 -18.34701 -17.52429 -16.75133 -16.49596 -15.94866 -15.90158 -14.98297 -14.92011 -14.43618 -14.25343 -14.06879 -13.92506 -13.53822 -13.38540 -12.95143 -12.66576 -12.35146 -12.10137 -12.06887 -11.84302 -11.66536 -11.10454 -11.07140 -10.80602 -10.35268 -10.23637 -10.02724 -9.90343 -9.75246 -9.66796 -9.54773 -9.19440 -8.53788 -8.03620 -6.04435 -4.02677 0.31882 0.98699 2.01787 2.30031 2.42749 2.74468 3.31918 3.39187 3.42018 3.60685 3.96963 4.44915 4.45435 4.54635 4.54797 4.58767 4.88662 4.95515 5.08736 5.25364 5.29183 5.30206 5.55782 5.67919 5.74229 5.78645 5.83033 5.95933 6.09561 6.16379 6.30657 6.52220 6.60086 6.75021 6.86510 7.28149 7.40914 7.53897 7.63713 7.78864 8.18195 8.53165 9.00286 9.57995 11.09023 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.002382 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.479023 B =11753.568740 C =12426.095353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 C -0.067 4.067 4 C -0.095 4.095 5 C -0.014 4.014 6 C -0.521 4.521 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.265 1.265 14 N -0.240 5.240 15 N -0.565 5.565 16 C 0.455 3.545 17 C -0.247 4.247 18 C 0.031 3.969 19 C -0.255 4.255 20 C 0.541 3.459 21 O -0.526 6.526 22 O -0.513 6.513 23 C 0.216 3.784 24 N -0.514 5.514 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.263 0.737 35 H 0.395 0.605 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.414 0.586 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -23.772 11.315 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.081 4.081 3 C -0.106 4.106 4 C -0.134 4.134 5 C -0.051 4.051 6 C -0.559 4.559 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.543 5.543 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.189 1.189 14 N -0.044 5.044 15 N -0.285 5.285 16 C 0.219 3.781 17 C -0.273 4.273 18 C 0.006 3.994 19 C -0.261 4.261 20 C 0.386 3.614 21 O -0.416 6.416 22 O -0.325 6.325 23 C 0.053 3.947 24 N -0.229 5.229 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.238 0.762 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.273 0.727 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.338 -23.084 11.224 25.703 hybrid contribution -0.839 -0.665 0.461 1.166 sum -2.177 -23.749 11.686 26.558 Atomic orbital electron populations 1.21399 0.93220 1.04209 1.03377 1.25418 0.94463 0.94293 0.93933 1.20705 1.00107 0.88848 1.00966 1.21455 1.00851 0.97316 0.93775 1.19581 0.95341 0.92426 0.97798 1.21133 1.29498 1.03255 1.01994 0.91107 1.25048 0.96297 0.96958 0.95310 1.69919 1.44669 1.15227 1.24531 0.86762 0.81477 0.78159 0.82793 1.20264 1.21482 1.18916 1.74708 1.23709 0.90561 1.15403 1.45551 1.06751 1.01208 1.75027 1.18303 0.88977 0.84059 0.86760 1.20984 1.01370 0.90856 1.14047 1.21036 0.91889 0.98610 0.87908 1.19751 0.93863 0.92372 1.20108 1.20496 0.80384 0.88865 0.71650 1.90882 1.71817 1.31408 1.47532 1.84565 1.20329 1.41645 1.85963 1.23083 1.00488 0.85305 0.85777 1.67558 1.05525 1.30441 1.19418 0.89956 0.88647 0.92138 0.89725 0.89946 0.92498 0.92395 0.96430 0.96783 0.92756 0.76213 0.84107 0.83432 0.72728 0.81026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.46 36.01 0.34 -1.21 16 2 C 0.11 1.46 6.55 -78.91 -0.52 0.95 16 3 C -0.07 -0.97 5.60 -27.89 -0.16 -1.13 16 4 C -0.10 -1.73 5.03 -26.74 -0.13 -1.87 16 5 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 6 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 7 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 8 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 9 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 10 Si 0.88 21.44 27.47 -169.99 -4.67 16.78 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 14 N -0.24 -3.46 10.94 35.60 0.39 -3.07 16 15 N -0.57 -6.61 6.23 31.12 0.19 -6.41 16 16 C 0.46 5.40 7.59 -155.22 -1.18 4.22 16 17 C -0.25 -2.18 9.86 -39.64 -0.39 -2.57 16 18 C 0.03 0.28 9.65 -39.27 -0.38 -0.10 16 19 C -0.25 -2.54 5.89 -104.82 -0.62 -3.15 16 20 C 0.54 5.24 8.27 34.46 0.28 5.53 16 21 O -0.53 -6.39 17.20 -19.27 -0.33 -6.72 16 22 O -0.51 -3.50 12.70 -40.66 -0.52 -4.02 16 23 C 0.22 2.31 10.79 -17.11 -0.18 2.12 16 24 N -0.51 -6.87 9.88 -12.11 -0.12 -6.99 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.94 6.91 -51.93 -0.36 0.58 16 27 H 0.06 0.49 6.31 -51.93 -0.33 0.16 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.00 7.01 -51.93 -0.36 0.64 16 32 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.40 3.40 6.37 -182.60 -1.16 2.23 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.15 1.10 7.73 -52.49 -0.41 0.70 16 38 H 0.41 0.99 9.11 45.56 0.42 1.40 16 39 H 0.17 1.49 7.61 -52.48 -0.40 1.09 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -35.45 339.69 -7.70 -43.15 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.07 Total: -0.10 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.47 Total: -10.77 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 1.24 Total: -43.43 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.85 Total: -10.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.45 -7.70 -43.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841633118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.631 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds