Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50694 * 119.99907 * 2 1 4 4 C 1.52998 * 109.47696 * 295.00441 * 3 2 1 5 5 C 1.52994 * 109.47575 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47124 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00164 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99941 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99874 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00114 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47412 * 89.99492 * 10 8 6 12 12 H 1.48508 * 109.47036 * 209.99546 * 10 8 6 13 13 H 1.48501 * 109.46911 * 329.99315 * 10 8 6 14 14 N 1.28019 * 119.99876 * 180.02562 * 2 1 3 15 15 N 1.40095 * 120.00197 * 359.97438 * 14 2 1 16 16 C 1.38450 * 119.99917 * 179.97438 * 15 14 2 17 17 C 1.39441 * 119.53389 * 180.02562 * 16 15 14 18 18 C 1.36835 * 119.37996 * 180.02562 * 17 16 15 19 19 C 1.40421 * 118.48976 * 359.97438 * 18 17 16 20 20 C 1.47394 * 120.47574 * 179.97438 * 19 18 17 21 21 O 1.21511 * 120.00268 * 359.97438 * 20 19 18 22 22 O 1.34763 * 119.99704 * 180.02562 * 20 19 18 23 23 C 1.39646 * 119.04002 * 0.02562 * 19 18 17 24 24 N 1.31632 * 120.51859 * 0.02562 * 23 19 18 25 25 H 1.09002 * 109.47122 * 269.99788 * 1 2 3 26 26 H 1.08997 * 109.46896 * 29.99673 * 1 2 3 27 27 H 1.08996 * 109.46852 * 149.99853 * 1 2 3 28 28 H 1.09004 * 109.47299 * 55.00396 * 3 2 1 29 29 H 1.09001 * 109.47201 * 174.99851 * 3 2 1 30 30 H 1.09004 * 109.46709 * 300.00316 * 4 3 2 31 31 H 1.09001 * 109.47277 * 59.99457 * 4 3 2 32 32 H 1.08996 * 109.47012 * 299.99354 * 5 4 3 33 33 H 1.09000 * 109.47297 * 59.99991 * 5 4 3 34 34 H 0.96999 * 119.99793 * 179.97438 * 9 8 6 35 35 H 0.96998 * 119.99736 * 0.02562 * 15 14 2 36 36 H 1.08002 * 120.30972 * 0.27097 * 17 16 15 37 37 H 1.07998 * 120.75080 * 180.02562 * 18 17 16 38 38 H 0.96702 * 116.99497 * 179.97438 * 22 20 19 39 39 H 1.08007 * 119.73821 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9875 2.0517 -1.3072 5 6 2.7530 3.3764 -1.3075 6 6 2.4846 4.1114 -2.5954 7 1 1.8328 3.6774 -3.3392 8 6 3.0702 5.3386 -2.8237 9 7 2.8363 5.9798 -3.9479 10 14 4.1969 6.0897 -1.5370 11 1 5.5942 5.6542 -1.7877 12 1 4.1186 7.5707 -1.6144 13 1 3.7735 5.6415 -0.1861 14 7 2.1471 -1.1087 -0.0005 15 7 1.4467 -2.3220 -0.0005 16 6 2.1389 -3.5210 -0.0016 17 6 1.4320 -4.7229 -0.0021 18 6 2.1194 -5.9060 -0.0026 19 6 3.5230 -5.8652 -0.0032 20 6 4.3071 -7.1132 -0.0032 21 8 3.7394 -8.1875 -0.0022 22 8 5.6538 -7.0628 -0.0032 23 6 4.1651 -4.6251 -0.0026 24 7 3.4654 -3.5101 -0.0011 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.9317 1.9144 0.8419 29 1 3.3288 1.1079 0.0896 30 1 2.3163 1.4423 -2.1491 31 1 0.9193 2.2489 -1.3968 32 1 2.4246 3.9859 -0.4657 33 1 3.8212 3.1788 -1.2182 34 1 3.2481 6.8433 -4.1084 35 1 0.4767 -2.3219 -0.0005 36 1 0.3520 -4.7199 -0.0061 37 1 1.5942 -6.8497 -0.0035 38 1 6.1247 -7.9074 -0.0028 39 1 5.2442 -4.5806 -0.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841633118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = -47.559688 kcal Electronic energy + Delta-G solvation = -21311.541949 eV Core-core repulsion = 17832.783302 eV Total energy + Delta-G solvation = -3478.758647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74497 -40.59598 -39.17369 -37.06645 -36.56852 -35.01700 -33.67140 -33.56595 -31.32926 -29.33031 -29.14724 -25.80448 -25.12816 -24.43412 -22.49443 -21.94749 -20.51896 -19.25920 -19.12982 -18.74448 -18.23906 -17.47845 -16.75012 -16.68346 -16.31280 -15.86697 -15.64486 -15.57676 -15.05596 -14.89412 -14.61524 -14.41703 -14.10051 -13.73666 -13.67725 -13.37712 -13.10273 -12.93906 -12.62739 -12.54384 -12.49305 -11.85238 -11.75374 -11.66581 -11.38692 -11.30074 -11.10390 -10.98981 -10.74655 -10.71970 -10.45736 -8.87951 -8.25648 -6.29443 -0.46712 0.26508 1.11091 1.41033 1.41753 1.48587 1.54065 1.62309 2.12605 2.40362 2.82648 3.10420 3.18148 3.66269 3.75283 3.83802 3.84602 4.07676 4.22122 4.35075 4.36913 4.51962 4.60967 4.64640 4.69161 4.90928 4.97062 5.05299 5.10378 5.14832 5.19189 5.30023 5.42582 5.58909 5.59978 5.68514 5.71883 5.95478 6.32821 6.74526 6.79309 7.00635 7.34694 7.35250 8.91198 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.002382 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.479023 B =11753.568740 C =12426.095353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.109 3.891 3 C -0.058 4.058 4 C -0.085 4.085 5 C -0.014 4.014 6 C -0.531 4.531 7 H 0.030 0.970 8 C -0.001 4.001 9 N -0.955 5.955 10 Si 0.952 3.048 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.238 1.238 14 N -0.273 5.273 15 N -0.561 5.561 16 C 0.432 3.568 17 C -0.231 4.231 18 C 0.029 3.971 19 C -0.258 4.258 20 C 0.548 3.452 21 O -0.553 6.553 22 O -0.507 6.507 23 C 0.208 3.792 24 N -0.553 5.553 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.016 0.984 34 H 0.265 0.735 35 H 0.410 0.590 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.434 0.566 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -24.975 13.508 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.084 4.084 3 C -0.098 4.098 4 C -0.124 4.124 5 C -0.051 4.051 6 C -0.569 4.569 7 H 0.048 0.952 8 C -0.197 4.197 9 N -0.596 5.596 10 Si 0.775 3.225 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.161 1.161 14 N -0.078 5.078 15 N -0.284 5.284 16 C 0.197 3.803 17 C -0.256 4.256 18 C 0.003 3.997 19 C -0.264 4.264 20 C 0.394 3.606 21 O -0.446 6.446 22 O -0.321 6.321 23 C 0.047 3.953 24 N -0.269 5.269 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.192 0.808 37 H 0.183 0.817 38 H 0.296 0.704 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.601 -24.326 13.429 27.832 hybrid contribution -0.738 -0.403 -0.306 0.895 sum -2.339 -24.729 13.123 28.093 Atomic orbital electron populations 1.21438 0.90683 1.04745 1.04965 1.25312 0.96024 0.93195 0.93863 1.20495 0.99943 0.89934 0.99385 1.21244 1.00528 0.95269 0.95329 1.19560 0.96102 0.94225 0.95243 1.21548 1.28352 1.03670 1.03337 0.95160 1.26078 0.98256 0.97655 0.97723 1.70084 1.46510 1.15942 1.27065 0.85632 0.79013 0.77067 0.80789 1.19671 1.21235 1.16092 1.74562 1.25671 0.91754 1.15834 1.45409 1.07345 1.00294 1.75403 1.18674 0.88986 0.84926 0.87725 1.21253 1.02886 0.89434 1.12049 1.21315 0.91642 0.99417 0.87292 1.19915 0.94628 0.92257 1.19613 1.20421 0.81054 0.88233 0.70917 1.90874 1.72522 1.32192 1.49017 1.84528 1.19080 1.43268 1.85176 1.23241 1.01017 0.85120 0.85921 1.67483 1.06821 1.31866 1.20738 0.87708 0.89003 0.90687 0.87551 0.91030 0.94506 0.91640 0.95064 0.96593 0.92639 0.74543 0.80803 0.81745 0.70406 0.79954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.46 71.24 0.67 -1.97 16 2 C 0.11 2.68 6.55 46.53 0.30 2.98 16 3 C -0.06 -1.61 5.60 29.85 0.17 -1.45 16 4 C -0.08 -3.05 5.03 30.59 0.15 -2.90 16 5 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 6 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 7 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 8 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 9 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 10 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 14 N -0.27 -7.61 10.94 -41.20 -0.45 -8.06 16 15 N -0.56 -12.26 6.23 -55.45 -0.35 -12.60 16 16 C 0.43 9.71 7.59 133.25 1.01 10.72 16 17 C -0.23 -3.55 9.86 22.23 0.22 -3.33 16 18 C 0.03 0.46 9.65 22.47 0.22 0.67 16 19 C -0.26 -4.82 5.89 -19.99 -0.12 -4.94 16 20 C 0.55 9.90 8.27 70.23 0.58 10.48 16 21 O -0.55 -12.75 17.20 19.80 0.34 -12.41 16 22 O -0.51 -6.11 12.70 -56.73 -0.72 -6.83 16 23 C 0.21 4.34 10.79 85.06 0.92 5.25 16 24 N -0.55 -14.54 9.88 -192.21 -1.90 -16.44 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.09 1.61 6.91 -2.39 -0.02 1.60 16 27 H 0.07 1.02 6.31 -2.39 -0.02 1.00 16 28 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 29 H 0.07 2.14 8.11 -2.39 -0.02 2.12 16 30 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.06 2.23 7.01 -2.39 -0.02 2.21 16 32 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 33 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 34 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.41 6.09 6.37 -213.33 -1.36 4.73 16 36 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.17 2.06 7.73 -2.91 -0.02 2.04 16 38 H 0.43 1.26 9.11 -74.06 -0.67 0.59 16 39 H 0.18 3.10 7.61 -2.91 -0.02 3.08 16 Total: -1.00 -78.63 339.69 3.07 -75.55 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -0.99 Total: 9.60 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.96 Total: -14.65 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -2.40 Total: -96.97 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.38 Total: -19.24 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -78.63 3.07 -75.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841633118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.994 kcal (2) G-P(sol) polarization free energy of solvation -78.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds