Wall clock time and date at job start Tue Mar 31 2020 06:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.53003 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47499 * 68.06351 * 4 3 2 6 6 C 1.46903 * 110.99930 * 157.93556 * 5 4 3 7 7 C 1.50699 * 109.47282 * 288.00488 * 6 5 4 8 8 H 1.07993 * 119.99817 * 2.76407 * 7 6 5 9 9 C 1.37877 * 119.99845 * 182.76431 * 7 6 5 10 10 N 1.31515 * 119.99998 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00320 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47420 * 89.99622 * 11 9 7 13 13 H 1.48497 * 109.47425 * 210.00140 * 11 9 7 14 14 H 1.48507 * 109.46841 * 330.00081 * 11 9 7 15 15 C 1.46900 * 111.00282 * 281.89639 * 5 4 3 16 16 C 1.50695 * 109.47145 * 164.70039 * 15 5 4 17 17 C 1.40075 * 119.02514 * 89.99866 * 16 15 5 18 18 C 1.35595 * 121.93887 * 180.25538 * 17 16 15 19 19 C 1.40841 * 119.39352 * 359.50545 * 18 17 16 20 20 N 1.31017 * 138.56584 * 180.18702 * 19 18 17 21 21 O 1.21464 * 109.09165 * 180.24153 * 20 19 18 22 22 N 1.21477 * 116.28340 * 0.02562 * 21 20 19 23 23 C 1.31016 * 109.09063 * 359.97438 * 22 21 20 24 24 C 1.35598 * 119.02793 * 269.97860 * 16 15 5 25 25 H 1.09004 * 109.46520 * 60.00191 * 1 2 3 26 26 H 1.08993 * 109.46898 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46599 * 300.00654 * 1 2 3 28 28 H 1.08992 * 109.47513 * 59.99567 * 3 2 1 29 29 H 1.09004 * 109.46910 * 299.99266 * 3 2 1 30 30 H 1.09003 * 109.47094 * 308.06673 * 4 3 2 31 31 H 1.08996 * 109.47248 * 188.06719 * 4 3 2 32 32 H 1.09000 * 109.46800 * 48.00715 * 6 5 4 33 33 H 1.08998 * 109.46714 * 168.00585 * 6 5 4 34 34 H 0.96996 * 120.00385 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46855 * 44.70303 * 15 5 4 36 36 H 1.08997 * 109.47039 * 284.70185 * 15 5 4 37 37 H 1.07993 * 119.03005 * 359.97438 * 17 16 15 38 38 H 1.08006 * 120.30239 * 179.72415 * 18 17 16 39 39 H 1.07993 * 120.30678 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9824 0.6303 -1.2856 6 6 5.3874 0.9712 -1.5459 7 6 5.4955 2.4373 -1.8777 8 1 4.6160 3.0634 -1.8501 9 6 6.7172 2.9791 -2.2166 10 7 7.7883 2.2167 -2.2498 11 14 6.8514 4.7964 -2.6273 12 1 7.1338 5.5644 -1.3881 13 1 7.9538 5.0040 -3.6003 14 1 5.5731 5.2657 -3.2199 15 6 3.7759 -0.8233 -1.3323 16 6 3.8830 -1.3003 -2.7578 17 6 5.1342 -1.6911 -3.2515 18 6 5.2991 -2.1248 -4.5256 19 6 4.1826 -2.1972 -5.3811 20 7 3.9116 -2.5435 -6.6152 21 8 2.7242 -2.3893 -6.8195 22 7 2.0683 -1.9681 -5.8878 23 6 2.8566 -1.7832 -4.8578 24 6 2.7652 -1.3390 -3.5244 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5140 0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.8480 0.5241 0.8082 31 1 3.9782 2.1701 0.1436 32 1 5.9840 0.7543 -0.6599 33 1 5.7550 0.3807 -2.3851 34 1 8.6478 2.5979 -2.4878 35 1 2.7864 -1.0624 -0.9426 36 1 4.5346 -1.3177 -0.7258 37 1 5.9937 -1.6412 -2.5996 38 1 6.2770 -2.4155 -4.8801 39 1 1.8136 -1.0321 -3.1163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846811244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:29 Heat of formation + Delta-G solvation = 100.425449 kcal Electronic energy + Delta-G solvation = -23373.547756 eV Core-core repulsion = 19901.206226 eV Total energy + Delta-G solvation = -3472.341530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.34675 -39.08411 -37.86439 -36.11232 -34.51924 -33.17999 -32.54371 -31.17451 -29.53838 -27.78724 -26.37498 -25.42801 -24.76762 -22.95987 -22.27922 -21.01029 -20.16012 -18.65627 -18.43500 -17.70035 -16.52877 -16.34618 -15.69624 -15.28886 -15.14847 -14.63075 -14.40267 -14.13543 -14.12496 -13.48454 -13.11228 -12.59911 -12.50666 -12.21472 -11.86658 -11.79634 -11.62759 -11.50847 -11.43484 -11.42030 -10.98047 -10.97164 -10.73255 -10.67117 -10.38579 -9.94398 -9.40412 -9.29776 -9.26590 -8.49918 -8.22885 -7.37952 -6.09765 -4.10372 0.28332 1.40773 2.21835 3.26780 3.34279 3.37813 3.38809 3.57512 3.72288 3.99567 4.05866 4.37684 4.78677 4.90561 5.09179 5.18428 5.27131 5.30466 5.40893 5.47618 5.52746 5.63013 5.68039 5.70143 5.77575 5.85780 5.92542 6.13939 6.24279 6.25382 6.39247 6.49994 6.72790 6.75918 7.13631 7.21384 7.35604 7.73425 7.99114 8.10100 8.44347 8.70609 8.96318 9.53911 11.00802 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.006257 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.976742 B = 4473.816162 C = 6361.137456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.065 3.935 4 C 0.064 3.936 5 N -0.528 5.528 6 C 0.184 3.816 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.078 3.922 16 C -0.018 4.018 17 C -0.055 4.055 18 C -0.084 4.084 19 C 0.021 3.979 20 N -0.358 5.358 21 O 0.362 5.638 22 N -0.358 5.358 23 C 0.026 3.974 24 C -0.063 4.063 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.100 0.900 32 H -0.009 1.009 33 H 0.040 0.960 34 H 0.261 0.739 35 H 0.105 0.895 36 H 0.037 0.963 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 -7.841 2.034 12.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.064 4.064 5 N -0.253 5.253 6 C 0.059 3.941 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.050 4.050 16 C -0.023 4.023 17 C -0.077 4.077 18 C -0.104 4.104 19 C -0.131 4.131 20 N -0.082 5.082 21 O 0.128 5.872 22 N -0.083 5.083 23 C -0.125 4.125 24 C -0.085 4.085 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.009 0.991 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.056 0.944 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.447 -8.023 0.579 13.185 hybrid contribution 0.963 1.230 1.056 1.886 sum -9.484 -6.793 1.635 11.780 Atomic orbital electron populations 1.22678 0.82208 1.02075 0.99645 1.87840 1.18765 1.28987 1.95239 1.22774 0.94630 0.83962 0.99769 1.22069 0.91895 1.01627 0.90820 1.62125 1.25313 1.07556 1.30257 1.19930 0.80991 0.97250 0.95901 1.21126 0.93832 0.93660 1.45895 0.91972 1.24952 0.95777 0.98064 0.95634 1.69927 0.99291 1.35495 1.48955 0.86551 0.77803 0.85223 0.78189 1.20713 1.21255 1.19836 1.21413 1.02990 0.90541 0.90035 1.19732 0.91624 0.93731 0.97219 1.21106 0.97858 0.93542 0.95169 1.19840 0.95884 1.02667 0.92014 1.22899 0.97551 1.02220 0.90392 1.75139 0.96569 1.19896 1.16558 1.85305 1.12713 1.55477 1.33676 1.75147 1.19883 1.16250 0.96975 1.22905 0.89271 1.03101 0.97268 1.19652 1.00398 1.00661 0.87774 0.94256 0.90245 0.94643 0.93837 0.92373 0.94937 0.88202 0.99073 0.94199 0.92893 0.87735 0.94440 0.83725 0.83977 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.37 7.93 -35.23 -0.28 -5.65 16 3 C 0.07 0.94 6.25 37.16 0.23 1.17 16 4 C 0.06 1.10 5.36 -3.82 -0.02 1.08 16 5 N -0.53 -10.25 4.32 -237.52 -1.03 -11.28 16 6 C 0.18 4.35 4.55 -4.97 -0.02 4.33 16 7 C -0.51 -13.37 8.37 -34.44 -0.29 -13.66 16 8 H 0.06 1.64 7.65 -52.49 -0.40 1.23 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 11 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.08 1.28 4.87 -4.98 -0.02 1.26 16 16 C -0.02 -0.30 5.04 -104.88 -0.53 -0.83 16 17 C -0.05 -0.87 7.86 -39.84 -0.31 -1.18 16 18 C -0.08 -1.29 10.08 -39.54 -0.40 -1.69 16 19 C 0.02 0.36 7.76 -83.03 -0.64 -0.29 16 20 N -0.36 -5.86 12.29 31.88 0.39 -5.47 16 21 O 0.36 5.66 11.67 26.94 0.31 5.97 16 22 N -0.36 -5.86 12.29 31.89 0.39 -5.47 16 23 C 0.03 0.44 7.76 -83.03 -0.64 -0.20 16 24 C -0.06 -1.01 9.65 -39.54 -0.38 -1.40 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 31 H 0.10 1.86 7.00 -51.93 -0.36 1.49 16 32 H -0.01 -0.21 8.05 -51.93 -0.42 -0.63 16 33 H 0.04 0.99 5.27 -51.93 -0.27 0.71 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.10 1.61 5.06 -51.93 -0.26 1.35 16 36 H 0.04 0.60 7.99 -51.93 -0.41 0.19 16 37 H 0.15 2.22 7.54 -52.49 -0.40 1.82 16 38 H 0.14 1.89 8.06 -52.48 -0.42 1.46 16 39 H 0.14 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -29.04 328.29 -6.60 -35.64 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.04 Total: -1.57 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -2.02 Total: -8.52 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.49 Total: -46.84 kcal Atomic # 8 Polarization: 0.28 SS G_CDS: 0.03 Total: 0.32 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.04 -6.60 -35.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846811244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.069 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds