Wall clock time and date at job start Tue Mar 31 2020 06:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.53003 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47499 * 68.06351 * 4 3 2 6 6 C 1.46903 * 110.99930 * 157.93556 * 5 4 3 7 7 C 1.50699 * 109.47282 * 288.00488 * 6 5 4 8 8 H 1.07993 * 119.99817 * 2.76407 * 7 6 5 9 9 C 1.37877 * 119.99845 * 182.76431 * 7 6 5 10 10 N 1.31515 * 119.99998 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00320 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47420 * 89.99622 * 11 9 7 13 13 H 1.48497 * 109.47425 * 210.00140 * 11 9 7 14 14 H 1.48507 * 109.46841 * 330.00081 * 11 9 7 15 15 C 1.46900 * 111.00282 * 281.89639 * 5 4 3 16 16 C 1.50695 * 109.47145 * 164.70039 * 15 5 4 17 17 C 1.40075 * 119.02514 * 89.99866 * 16 15 5 18 18 C 1.35595 * 121.93887 * 180.25538 * 17 16 15 19 19 C 1.40841 * 119.39352 * 359.50545 * 18 17 16 20 20 N 1.31017 * 138.56584 * 180.18702 * 19 18 17 21 21 O 1.21464 * 109.09165 * 180.24153 * 20 19 18 22 22 N 1.21477 * 116.28340 * 0.02562 * 21 20 19 23 23 C 1.31016 * 109.09063 * 359.97438 * 22 21 20 24 24 C 1.35598 * 119.02793 * 269.97860 * 16 15 5 25 25 H 1.09004 * 109.46520 * 60.00191 * 1 2 3 26 26 H 1.08993 * 109.46898 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46599 * 300.00654 * 1 2 3 28 28 H 1.08992 * 109.47513 * 59.99567 * 3 2 1 29 29 H 1.09004 * 109.46910 * 299.99266 * 3 2 1 30 30 H 1.09003 * 109.47094 * 308.06673 * 4 3 2 31 31 H 1.08996 * 109.47248 * 188.06719 * 4 3 2 32 32 H 1.09000 * 109.46800 * 48.00715 * 6 5 4 33 33 H 1.08998 * 109.46714 * 168.00585 * 6 5 4 34 34 H 0.96996 * 120.00385 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46855 * 44.70303 * 15 5 4 36 36 H 1.08997 * 109.47039 * 284.70185 * 15 5 4 37 37 H 1.07993 * 119.03005 * 359.97438 * 17 16 15 38 38 H 1.08006 * 120.30239 * 179.72415 * 18 17 16 39 39 H 1.07993 * 120.30678 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9824 0.6303 -1.2856 6 6 5.3874 0.9712 -1.5459 7 6 5.4955 2.4373 -1.8777 8 1 4.6160 3.0634 -1.8501 9 6 6.7172 2.9791 -2.2166 10 7 7.7883 2.2167 -2.2498 11 14 6.8514 4.7964 -2.6273 12 1 7.1338 5.5644 -1.3881 13 1 7.9538 5.0040 -3.6003 14 1 5.5731 5.2657 -3.2199 15 6 3.7759 -0.8233 -1.3323 16 6 3.8830 -1.3003 -2.7578 17 6 5.1342 -1.6911 -3.2515 18 6 5.2991 -2.1248 -4.5256 19 6 4.1826 -2.1972 -5.3811 20 7 3.9116 -2.5435 -6.6152 21 8 2.7242 -2.3893 -6.8195 22 7 2.0683 -1.9681 -5.8878 23 6 2.8566 -1.7832 -4.8578 24 6 2.7652 -1.3390 -3.5244 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5140 0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.8480 0.5241 0.8082 31 1 3.9782 2.1701 0.1436 32 1 5.9840 0.7543 -0.6599 33 1 5.7550 0.3807 -2.3851 34 1 8.6478 2.5979 -2.4878 35 1 2.7864 -1.0624 -0.9426 36 1 4.5346 -1.3177 -0.7258 37 1 5.9937 -1.6412 -2.5996 38 1 6.2770 -2.4155 -4.8801 39 1 1.8136 -1.0321 -3.1163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846811244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:28 Heat of formation + Delta-G solvation = 82.550077 kcal Electronic energy + Delta-G solvation = -23374.322890 eV Core-core repulsion = 19901.206226 eV Total energy + Delta-G solvation = -3473.116664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.64245 -40.39199 -39.01290 -37.48352 -35.82270 -34.81126 -34.20173 -32.45519 -30.88512 -29.42700 -27.54436 -26.65403 -26.14570 -24.57967 -23.63504 -22.28097 -21.67260 -19.95614 -19.74333 -19.00142 -18.43084 -17.47645 -16.98323 -16.59475 -16.53040 -16.19149 -15.71817 -15.42480 -15.34149 -14.97533 -14.55152 -14.04240 -13.83242 -13.61376 -13.39497 -13.15483 -12.95601 -12.86949 -12.75682 -12.72214 -12.65465 -12.47885 -12.21949 -12.13561 -11.94384 -11.48142 -11.21953 -10.66436 -10.53429 -10.39274 -9.50320 -8.96004 -8.15581 -6.22296 -0.98053 0.09944 0.94300 1.41002 1.43150 1.52641 2.09703 2.28540 2.43299 2.45902 2.78184 2.97372 3.18119 3.43185 3.56403 3.81849 3.92246 4.18762 4.28382 4.30729 4.41450 4.52122 4.56877 4.64504 4.67793 4.69998 4.87571 4.91464 4.92910 4.99387 5.09795 5.14832 5.29993 5.36259 5.49262 5.50311 5.71493 6.13501 6.32665 6.45622 6.66973 6.92838 7.42373 7.46009 8.94257 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.006257 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.976742 B = 4473.816162 C = 6361.137456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.077 3.923 4 C 0.062 3.938 5 N -0.534 5.534 6 C 0.198 3.802 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.954 3.046 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.270 1.270 15 C 0.084 3.916 16 C -0.027 4.027 17 C -0.063 4.063 18 C -0.082 4.082 19 C 0.009 3.991 20 N -0.361 5.361 21 O 0.376 5.624 22 N -0.360 5.360 23 C 0.014 3.986 24 C -0.061 4.061 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.080 0.920 32 H -0.034 1.034 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.120 0.880 36 H 0.040 0.960 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -7.662 2.188 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.000 4.000 4 C -0.066 4.066 5 N -0.259 5.259 6 C 0.072 3.928 7 C -0.555 4.555 8 H 0.077 0.923 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.780 3.220 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.043 4.043 16 C -0.031 4.031 17 C -0.085 4.085 18 C -0.102 4.102 19 C -0.143 4.143 20 N -0.084 5.084 21 O 0.139 5.861 22 N -0.083 5.083 23 C -0.137 4.137 24 C -0.082 4.082 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.099 0.901 32 H -0.016 1.016 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.058 0.942 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.797 -7.846 0.757 14.188 hybrid contribution 1.297 1.106 1.002 1.977 sum -10.500 -6.739 1.759 12.600 Atomic orbital electron populations 1.22875 0.80168 1.03498 1.00468 1.87774 1.20869 1.28405 1.95391 1.22543 0.92393 0.84548 1.00510 1.22075 0.94116 1.00477 0.89896 1.62056 1.22357 1.09660 1.31797 1.19606 0.83201 0.95778 0.94250 1.21455 0.93674 0.95118 1.45240 0.92332 1.25708 0.95616 1.01986 0.95758 1.70033 0.99677 1.37126 1.50076 0.85609 0.77629 0.80647 0.78110 1.19794 1.21282 1.19493 1.21420 1.03852 0.88647 0.90410 1.19774 0.91964 0.94172 0.97239 1.21178 0.97911 0.93894 0.95517 1.20066 0.96545 1.02012 0.91626 1.23112 0.97983 1.02576 0.90619 1.75129 0.96768 1.19967 1.16510 1.85294 1.12489 1.54916 1.33390 1.75135 1.19932 1.16265 0.96987 1.23067 0.89428 1.03535 0.97667 1.19774 1.00831 1.00140 0.87448 0.94034 0.88598 0.93191 0.91426 0.93249 0.94482 0.90141 1.01582 0.95368 0.92917 0.86196 0.94220 0.83669 0.82024 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.40 -10.24 7.93 -148.98 -1.18 -11.42 16 3 C 0.08 2.07 6.25 71.98 0.45 2.52 16 4 C 0.06 2.11 5.36 86.30 0.46 2.58 16 5 N -0.53 -20.63 4.32 -905.37 -3.91 -24.54 16 6 C 0.20 9.49 4.55 85.56 0.39 9.88 16 7 C -0.52 -27.49 8.37 25.60 0.21 -27.27 16 8 H 0.06 3.09 7.65 -2.91 -0.02 3.07 16 9 C 0.01 0.42 5.46 84.65 0.46 0.88 16 10 N -0.93 -53.06 13.29 21.45 0.28 -52.77 16 11 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.08 2.70 4.87 85.56 0.42 3.11 16 16 C -0.03 -0.85 5.04 -20.03 -0.10 -0.95 16 17 C -0.06 -1.98 7.86 22.10 0.17 -1.81 16 18 C -0.08 -2.49 10.08 22.29 0.22 -2.26 16 19 C 0.01 0.28 7.76 42.62 0.33 0.61 16 20 N -0.36 -11.42 12.29 -57.46 -0.71 -12.12 16 21 O 0.38 11.29 11.67 139.35 1.63 12.91 16 22 N -0.36 -11.31 12.29 -57.42 -0.71 -12.02 16 23 C 0.01 0.46 7.76 42.62 0.33 0.79 16 24 C -0.06 -1.87 9.65 22.30 0.22 -1.65 16 25 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.04 1.21 7.96 -2.39 -0.02 1.19 16 31 H 0.08 3.01 7.00 -2.39 -0.02 3.00 16 32 H -0.03 -1.75 8.05 -2.39 -0.02 -1.77 16 33 H 0.03 1.42 5.27 -2.39 -0.01 1.41 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.12 3.50 5.06 -2.39 -0.01 3.49 16 36 H 0.04 1.26 7.99 -2.39 -0.02 1.24 16 37 H 0.15 4.51 7.54 -2.91 -0.02 4.49 16 38 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -60.86 328.29 3.32 -57.54 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.06 Total: 9.14 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.82 Total: -11.86 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -5.03 Total: -101.45 kcal Atomic # 8 Polarization: 1.05 SS G_CDS: 0.44 Total: 1.50 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -60.86 3.32 -57.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846811244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.093 kcal (2) G-P(sol) polarization free energy of solvation -60.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds