Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99899 * 2 1 4 4 C 1.38358 * 119.99801 * 179.97438 * 2 1 3 5 5 C 1.39936 * 119.99768 * 5.02672 * 4 2 1 6 6 N 1.31426 * 120.01940 * 180.02562 * 5 4 2 7 7 C 1.33322 * 120.00518 * 359.94841 * 6 5 4 8 8 C 1.47697 * 120.00147 * 180.30031 * 7 6 5 9 9 O 1.21482 * 119.99846 * 179.72497 * 8 7 6 10 10 O 1.34726 * 120.00152 * 359.72496 * 8 7 6 11 11 C 1.45196 * 117.00081 * 177.70879 * 10 8 7 12 12 C 1.50697 * 112.85396 * 65.17640 * 11 10 8 13 13 H 1.08000 * 120.00403 * 242.53100 * 12 11 10 14 14 C 1.37885 * 119.99900 * 62.52037 * 12 11 10 15 15 N 1.31512 * 119.99499 * 353.78077 * 14 12 11 16 16 Si 1.86798 * 120.00086 * 173.77108 * 14 12 11 17 17 H 1.48497 * 109.46926 * 90.00643 * 16 14 12 18 18 H 1.48496 * 109.46947 * 210.00385 * 16 14 12 19 19 H 1.48500 * 109.47050 * 330.00744 * 16 14 12 20 20 C 1.53782 * 113.61664 * 293.97960 * 11 10 8 21 21 C 1.53957 * 87.02295 * 220.04990 * 20 11 10 22 22 C 1.53774 * 87.10833 * 25.36068 * 21 20 11 23 23 C 1.39456 * 119.99056 * 0.02562 * 7 6 5 24 24 N 1.32033 * 119.98337 * 0.02562 * 23 7 6 25 25 H 1.09000 * 109.47018 * 240.00213 * 1 2 3 26 26 H 1.09006 * 109.46986 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47117 * 119.99717 * 1 2 3 28 28 H 1.08997 * 109.47020 * 269.99855 * 3 2 1 29 29 H 1.08999 * 109.47270 * 30.00288 * 3 2 1 30 30 H 1.09004 * 109.46682 * 150.00056 * 3 2 1 31 31 H 1.08006 * 119.98371 * 0.02562 * 5 4 2 32 32 H 0.97003 * 119.99933 * 185.02122 * 15 14 12 33 33 H 1.09001 * 113.61643 * 334.56716 * 20 11 10 34 34 H 1.09003 * 113.61329 * 105.46722 * 20 11 10 35 35 H 1.09006 * 113.53099 * 270.80874 * 21 20 11 36 36 H 1.08998 * 113.74503 * 139.94823 * 21 20 11 37 37 H 1.09005 * 113.61534 * 220.08944 * 22 21 20 38 38 H 1.09006 * 113.69142 * 89.20605 * 22 21 20 39 39 H 1.08007 * 120.00679 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1568 -1.1982 0.0005 5 6 1.4610 -2.4078 -0.1051 6 7 2.1177 -3.5463 -0.1041 7 6 3.4471 -3.5491 -0.0035 8 6 4.1854 -4.8282 -0.0091 9 8 5.3971 -4.8305 0.0775 10 8 3.5151 -5.9925 -0.1103 11 6 4.3084 -7.2076 -0.1610 12 6 5.0697 -7.4631 1.1142 13 1 6.1494 -7.4835 1.1037 14 6 4.3877 -7.6707 2.2945 15 7 3.0812 -7.5252 2.3333 16 14 5.3194 -8.1589 3.8382 17 1 5.7267 -6.9372 4.5776 18 1 4.4444 -8.9917 4.7019 19 1 6.5278 -8.9358 3.4621 20 6 5.1714 -7.3276 -1.4281 21 6 4.7979 -8.8210 -1.4441 22 6 3.5284 -8.4319 -0.6685 23 6 4.1408 -2.3438 0.1012 24 7 3.4806 -1.2004 0.1012 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 2.3792 1.5834 -1.0276 29 1 1.6085 2.0284 0.5139 30 1 3.1500 1.1383 0.5139 31 1 0.3841 -2.4056 -0.1875 32 1 2.6098 -7.5995 3.1778 33 1 4.7785 -6.7702 -2.2784 34 1 6.2315 -7.1434 -1.2534 35 1 5.4836 -9.4473 -0.8732 36 1 4.5976 -9.2127 -2.4413 37 1 3.2638 -9.1381 0.1186 38 1 2.6844 -8.1769 -1.3095 39 1 5.2177 -2.3458 0.1832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847705354.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = 7.608542 kcal Electronic energy + Delta-G solvation = -23347.003374 eV Core-core repulsion = 19870.637001 eV Total energy + Delta-G solvation = -3476.366373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92846 -39.04438 -37.32664 -36.60136 -34.24649 -33.72511 -32.22740 -30.74639 -28.62221 -26.58161 -25.91283 -24.49995 -24.04715 -23.34854 -22.29860 -20.35487 -18.49916 -17.83966 -17.52962 -16.72190 -16.27732 -15.73242 -15.06410 -14.83293 -14.78415 -14.54534 -14.43189 -13.86835 -13.77321 -13.45168 -12.91533 -12.80202 -12.65120 -12.27481 -12.10344 -11.52015 -11.25645 -11.16013 -11.00661 -10.98409 -10.83413 -10.39889 -10.23484 -10.01319 -9.82883 -9.74434 -9.58038 -8.90845 -8.70044 -8.48170 -8.44125 -7.76916 -6.03393 -4.16224 0.89267 1.38887 2.61700 3.30425 3.37050 3.39137 3.41839 3.87058 4.32928 4.35661 4.40832 4.49571 4.59785 4.83190 5.01582 5.07193 5.25102 5.34750 5.35182 5.37761 5.57112 5.66623 5.75008 5.83312 5.95484 6.10875 6.33617 6.51108 6.54981 6.60305 6.71926 6.97916 6.98459 7.17450 7.35667 7.56004 7.60719 7.83854 7.96746 8.02142 8.38217 8.86906 9.25123 9.53618 11.00280 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.004441 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.904689 B = 6303.305830 C = 6762.614276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.605 5.605 3 C 0.095 3.905 4 C 0.361 3.639 5 C -0.008 4.008 6 N -0.346 5.346 7 C -0.010 4.010 8 C 0.528 3.472 9 O -0.507 6.507 10 O -0.318 6.318 11 C 0.237 3.763 12 C -0.516 4.516 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.856 5.856 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.159 4.159 21 C -0.131 4.131 22 C -0.106 4.106 23 C 0.160 3.840 24 N -0.510 5.510 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.262 0.738 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.886 13.881 -5.443 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.319 5.319 3 C -0.048 4.048 4 C 0.122 3.878 5 C -0.180 4.180 6 N -0.062 5.062 7 C -0.150 4.150 8 C 0.369 3.631 9 O -0.397 6.397 10 O -0.231 6.231 11 C 0.203 3.797 12 C -0.553 4.553 13 H 0.087 0.913 14 C -0.131 4.131 15 N -0.492 5.492 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.197 4.197 21 C -0.169 4.169 22 C -0.144 4.144 23 C 0.000 4.000 24 N -0.232 5.232 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.183 0.817 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.756 13.849 -5.317 15.912 hybrid contribution 0.374 -0.041 1.038 1.104 sum -5.382 13.807 -4.279 15.424 Atomic orbital electron populations 1.21797 0.77811 1.03317 1.02187 1.46096 1.05490 1.02952 1.77320 1.21683 0.97958 0.83650 1.01546 1.19641 0.89963 0.87463 0.90733 1.23266 1.01343 0.86557 1.06879 1.68398 1.07864 1.27649 1.02272 1.21378 0.90461 0.94318 1.08812 1.19912 0.85213 0.84059 0.73886 1.90744 1.14343 1.88057 1.46529 1.86665 1.42401 1.14125 1.79951 1.21261 0.87603 0.78489 0.92327 1.20941 0.93039 1.49600 0.91709 0.91336 1.25090 0.94772 0.94138 0.99066 1.70060 1.06814 1.46332 1.26010 0.86592 0.79954 0.78742 0.82856 1.20573 1.21045 1.19463 1.23562 1.01077 0.96064 0.98992 1.22563 0.99305 0.96348 0.98658 1.22884 0.95341 0.97915 0.98290 1.23484 1.01604 0.85888 0.89070 1.68066 1.06301 1.29447 1.19433 0.91845 0.90016 0.91845 0.93149 0.91580 0.90006 0.81652 0.92789 0.92257 0.91743 0.90236 0.93027 0.90764 0.92190 0.80110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 9.40 59.85 0.56 1.18 16 2 N -0.61 -6.36 3.37 -189.50 -0.64 -7.00 16 3 C 0.09 0.80 10.47 59.85 0.63 1.43 16 4 C 0.36 5.20 7.37 -155.03 -1.14 4.06 16 5 C -0.01 -0.13 10.49 -17.09 -0.18 -0.30 16 6 N -0.35 -6.93 10.26 -9.45 -0.10 -7.03 16 7 C -0.01 -0.22 6.74 -82.90 -0.56 -0.78 16 8 C 0.53 13.13 7.50 34.59 0.26 13.39 16 9 O -0.51 -13.14 14.82 -19.25 -0.29 -13.43 16 10 O -0.32 -8.54 9.58 -40.56 -0.39 -8.93 16 11 C 0.24 6.19 0.47 -90.96 -0.04 6.14 16 12 C -0.52 -14.54 7.08 -34.44 -0.24 -14.78 16 13 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 14 C 0.08 2.13 5.30 -17.82 -0.09 2.03 16 15 N -0.86 -24.87 12.79 55.43 0.71 -24.16 16 16 Si 0.89 21.68 29.55 -169.99 -5.02 16.66 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.16 -3.62 6.57 -25.83 -0.17 -3.79 16 21 C -0.13 -2.70 7.81 -25.83 -0.20 -2.90 16 22 C -0.11 -2.52 7.28 -25.92 -0.19 -2.71 16 23 C 0.16 2.85 10.76 -17.01 -0.18 2.67 16 24 N -0.51 -8.17 9.22 -11.94 -0.11 -8.28 16 25 H 0.06 0.42 8.11 -51.93 -0.42 -0.01 16 26 H 0.08 0.35 7.79 -51.93 -0.40 -0.06 16 27 H 0.06 0.38 7.74 -51.93 -0.40 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 30 H 0.08 0.82 7.30 -51.93 -0.38 0.44 16 31 H 0.17 1.95 6.71 -52.48 -0.35 1.60 16 32 H 0.26 7.26 8.32 -40.82 -0.34 6.92 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.49 8.09 -51.93 -0.42 1.07 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.86 7.98 -51.93 -0.41 1.45 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.18 2.97 7.63 -52.48 -0.40 2.57 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -33.81 334.26 -7.62 -41.42 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.26 Total: 0.06 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.56 Total: 5.64 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.14 Total: -46.47 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.67 Total: -22.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.81 -7.62 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847705354.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.033 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds