Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99899 * 2 1 4 4 C 1.38358 * 119.99801 * 179.97438 * 2 1 3 5 5 C 1.39936 * 119.99768 * 5.02672 * 4 2 1 6 6 N 1.31426 * 120.01940 * 180.02562 * 5 4 2 7 7 C 1.33322 * 120.00518 * 359.94841 * 6 5 4 8 8 C 1.47697 * 120.00147 * 180.30031 * 7 6 5 9 9 O 1.21482 * 119.99846 * 179.72497 * 8 7 6 10 10 O 1.34726 * 120.00152 * 359.72496 * 8 7 6 11 11 C 1.45196 * 117.00081 * 177.70879 * 10 8 7 12 12 C 1.50697 * 112.85396 * 65.17640 * 11 10 8 13 13 H 1.08000 * 120.00403 * 242.53100 * 12 11 10 14 14 C 1.37885 * 119.99900 * 62.52037 * 12 11 10 15 15 N 1.31512 * 119.99499 * 353.78077 * 14 12 11 16 16 Si 1.86798 * 120.00086 * 173.77108 * 14 12 11 17 17 H 1.48497 * 109.46926 * 90.00643 * 16 14 12 18 18 H 1.48496 * 109.46947 * 210.00385 * 16 14 12 19 19 H 1.48500 * 109.47050 * 330.00744 * 16 14 12 20 20 C 1.53782 * 113.61664 * 293.97960 * 11 10 8 21 21 C 1.53957 * 87.02295 * 220.04990 * 20 11 10 22 22 C 1.53774 * 87.10833 * 25.36068 * 21 20 11 23 23 C 1.39456 * 119.99056 * 0.02562 * 7 6 5 24 24 N 1.32033 * 119.98337 * 0.02562 * 23 7 6 25 25 H 1.09000 * 109.47018 * 240.00213 * 1 2 3 26 26 H 1.09006 * 109.46986 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47117 * 119.99717 * 1 2 3 28 28 H 1.08997 * 109.47020 * 269.99855 * 3 2 1 29 29 H 1.08999 * 109.47270 * 30.00288 * 3 2 1 30 30 H 1.09004 * 109.46682 * 150.00056 * 3 2 1 31 31 H 1.08006 * 119.98371 * 0.02562 * 5 4 2 32 32 H 0.97003 * 119.99933 * 185.02122 * 15 14 12 33 33 H 1.09001 * 113.61643 * 334.56716 * 20 11 10 34 34 H 1.09003 * 113.61329 * 105.46722 * 20 11 10 35 35 H 1.09006 * 113.53099 * 270.80874 * 21 20 11 36 36 H 1.08998 * 113.74503 * 139.94823 * 21 20 11 37 37 H 1.09005 * 113.61534 * 220.08944 * 22 21 20 38 38 H 1.09006 * 113.69142 * 89.20605 * 22 21 20 39 39 H 1.08007 * 120.00679 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1568 -1.1982 0.0005 5 6 1.4610 -2.4078 -0.1051 6 7 2.1177 -3.5463 -0.1041 7 6 3.4471 -3.5491 -0.0035 8 6 4.1854 -4.8282 -0.0091 9 8 5.3971 -4.8305 0.0775 10 8 3.5151 -5.9925 -0.1103 11 6 4.3084 -7.2076 -0.1610 12 6 5.0697 -7.4631 1.1142 13 1 6.1494 -7.4835 1.1037 14 6 4.3877 -7.6707 2.2945 15 7 3.0812 -7.5252 2.3333 16 14 5.3194 -8.1589 3.8382 17 1 5.7267 -6.9372 4.5776 18 1 4.4444 -8.9917 4.7019 19 1 6.5278 -8.9358 3.4621 20 6 5.1714 -7.3276 -1.4281 21 6 4.7979 -8.8210 -1.4441 22 6 3.5284 -8.4319 -0.6685 23 6 4.1408 -2.3438 0.1012 24 7 3.4806 -1.2004 0.1012 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 2.3792 1.5834 -1.0276 29 1 1.6085 2.0284 0.5139 30 1 3.1500 1.1383 0.5139 31 1 0.3841 -2.4056 -0.1875 32 1 2.6098 -7.5995 3.1778 33 1 4.7785 -6.7702 -2.2784 34 1 6.2315 -7.1434 -1.2534 35 1 5.4836 -9.4473 -0.8732 36 1 4.5976 -9.2127 -2.4413 37 1 3.2638 -9.1381 0.1186 38 1 2.6844 -8.1769 -1.3095 39 1 5.2177 -2.3458 0.1832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847705354.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -14.079373 kcal Electronic energy + Delta-G solvation = -23347.943833 eV Core-core repulsion = 19870.637001 eV Total energy + Delta-G solvation = -3477.306831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.22912 -40.87676 -38.88324 -37.89204 -36.05202 -35.11921 -34.35371 -32.00690 -29.32279 -28.30635 -27.43640 -26.35419 -25.37485 -24.91413 -23.63998 -21.93089 -20.44382 -19.38209 -18.60404 -18.28896 -17.98565 -16.98361 -16.91223 -16.66803 -16.10863 -16.04774 -15.64969 -15.47824 -15.22683 -14.82364 -14.46225 -13.98328 -13.48588 -13.47236 -13.35124 -12.96000 -12.94260 -12.90280 -12.79800 -12.47705 -12.41517 -12.23936 -12.09300 -11.77961 -11.63121 -11.40028 -11.12718 -10.77034 -10.60938 -10.39703 -10.14488 -8.82192 -8.15867 -6.34995 -0.47205 0.09856 1.36030 1.36967 1.48280 1.68102 1.77234 2.23382 2.37791 2.82420 3.09666 3.19897 3.28652 3.37509 3.94472 4.00308 4.03445 4.13475 4.23872 4.39058 4.43611 4.50636 4.53007 4.62873 4.75605 4.86525 4.91366 4.92502 4.95901 5.10793 5.17573 5.39122 5.43950 5.63868 5.66509 5.77640 5.94415 5.99440 6.31418 6.43915 6.69670 6.74252 7.29719 7.43722 8.87437 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.004441 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.904689 B = 6303.305830 C = 6762.614276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.589 5.589 3 C 0.086 3.914 4 C 0.371 3.629 5 C 0.001 3.999 6 N -0.381 5.381 7 C -0.059 4.059 8 C 0.520 3.480 9 O -0.536 6.536 10 O -0.337 6.337 11 C 0.209 3.791 12 C -0.530 4.530 13 H 0.053 0.947 14 C 0.031 3.969 15 N -0.885 5.885 16 Si 0.950 3.050 17 H -0.284 1.284 18 H -0.274 1.274 19 H -0.262 1.262 20 C -0.153 4.153 21 C -0.109 4.109 22 C -0.106 4.106 23 C 0.174 3.826 24 N -0.518 5.518 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.203 0.797 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 15.861 -5.850 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.299 5.299 3 C -0.056 4.056 4 C 0.128 3.872 5 C -0.174 4.174 6 N -0.096 5.096 7 C -0.195 4.195 8 C 0.364 3.636 9 O -0.427 6.427 10 O -0.252 6.252 11 C 0.175 3.825 12 C -0.567 4.567 13 H 0.071 0.929 14 C -0.172 4.172 15 N -0.522 5.522 16 Si 0.775 3.225 17 H -0.210 1.210 18 H -0.199 1.199 19 H -0.186 1.186 20 C -0.190 4.190 21 C -0.146 4.146 22 C -0.144 4.144 23 C 0.014 3.986 24 N -0.242 5.242 25 H 0.088 0.912 26 H 0.133 0.867 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.220 0.780 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.257 15.854 -5.732 18.354 hybrid contribution 0.637 -0.325 1.127 1.334 sum -6.620 15.529 -4.605 17.498 Atomic orbital electron populations 1.22216 0.75054 1.05986 1.03127 1.46630 1.07260 1.02224 1.73771 1.21924 0.97826 0.83228 1.02589 1.19958 0.89623 0.88914 0.88747 1.23839 1.02721 0.85681 1.05203 1.68234 1.07706 1.30142 1.03542 1.20869 0.91212 0.93086 1.14336 1.20576 0.85391 0.84788 0.72838 1.90687 1.15380 1.88553 1.48070 1.86630 1.43003 1.15046 1.80485 1.21555 0.88941 0.79148 0.92876 1.21084 0.92455 1.49854 0.93299 0.92930 1.25776 0.95573 0.94051 1.01799 1.70167 1.08001 1.47415 1.26591 0.85686 0.79144 0.78303 0.79399 1.20992 1.19895 1.18607 1.23482 0.99810 0.97900 0.97839 1.22479 0.96997 0.94875 1.00225 1.22859 0.96796 0.96567 0.98153 1.23433 1.01776 0.85492 0.87927 1.68182 1.07184 1.28004 1.20819 0.91172 0.86674 0.90536 0.91995 0.88022 0.91698 0.78038 0.92833 0.91268 0.92875 0.90318 0.89018 0.92971 0.91374 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 9.40 127.77 1.20 1.87 16 2 N -0.59 -10.15 3.37 -753.46 -2.54 -12.69 16 3 C 0.09 1.14 10.47 127.77 1.34 2.48 16 4 C 0.37 9.91 7.37 133.37 0.98 10.89 16 5 C 0.00 0.03 10.49 85.17 0.89 0.93 16 6 N -0.38 -15.44 10.26 -183.82 -1.89 -17.32 16 7 C -0.06 -2.56 6.74 41.71 0.28 -2.28 16 8 C 0.52 27.21 7.50 70.32 0.53 27.73 16 9 O -0.54 -29.29 14.82 19.89 0.29 -28.99 16 10 O -0.34 -18.93 9.58 -56.36 -0.54 -19.47 16 11 C 0.21 11.24 0.47 -11.01 -0.01 11.24 16 12 C -0.53 -30.92 7.08 25.60 0.18 -30.74 16 13 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 14 C 0.03 1.81 5.30 84.66 0.45 2.26 16 15 N -0.89 -52.94 12.79 21.45 0.27 -52.66 16 16 Si 0.95 45.49 29.55 68.60 2.03 47.52 16 17 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 20 C -0.15 -7.04 6.57 31.18 0.20 -6.83 16 21 C -0.11 -4.38 7.81 31.18 0.24 -4.14 16 22 C -0.11 -5.08 7.28 31.12 0.23 -4.85 16 23 C 0.17 6.36 10.76 84.96 0.91 7.27 16 24 N -0.52 -16.20 9.22 -191.70 -1.77 -17.97 16 25 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 26 H 0.11 0.31 7.79 -2.38 -0.02 0.29 16 27 H 0.08 0.55 7.74 -2.39 -0.02 0.53 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.68 7.92 -2.39 -0.02 0.66 16 30 H 0.06 1.14 7.30 -2.38 -0.02 1.12 16 31 H 0.20 4.13 6.71 -2.91 -0.02 4.11 16 32 H 0.26 14.92 8.32 -92.71 -0.77 14.14 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.05 2.52 8.09 -2.39 -0.02 2.50 16 35 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 36 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.05 2.68 7.98 -2.38 -0.02 2.66 16 38 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 39 H 0.19 6.35 7.63 -2.91 -0.02 6.33 16 Total: -1.00 -77.31 334.26 4.36 -72.95 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.06 Total: 12.80 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 7.44 Total: 15.83 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -5.92 Total: -100.64 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.25 Total: -48.46 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.31 4.36 -72.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847705354.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.873 kcal (2) G-P(sol) polarization free energy of solvation -77.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds