Wall clock time and date at job start Tue Mar 31 2020 06:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35290 * 117.00209 * 2 1 4 4 N 1.32472 * 119.02368 * 179.97438 * 3 2 1 5 5 C 1.32011 * 120.92006 * 180.02562 * 4 3 2 6 6 C 1.40062 * 118.98595 * 359.97438 * 5 4 3 7 7 C 1.47628 * 120.87982 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99847 * 49.95957 * 7 6 5 9 9 N 1.34780 * 120.00078 * 229.94880 * 7 6 5 10 10 C 1.46928 * 120.62922 * 356.21607 * 9 7 6 11 11 C 1.53192 * 108.77618 * 126.36525 * 10 9 7 12 12 C 1.53042 * 109.30688 * 54.63408 * 11 10 9 13 13 C 1.53040 * 109.54126 * 298.62929 * 12 11 10 14 14 H 1.08999 * 109.49820 * 301.39038 * 13 12 11 15 15 C 1.50705 * 109.49994 * 181.31713 * 13 12 11 16 16 H 1.07997 * 119.99737 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99805 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00462 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99632 * 180.27619 * 17 15 13 20 20 H 1.48500 * 109.47068 * 179.72354 * 19 17 15 21 21 H 1.48496 * 109.47409 * 299.73108 * 19 17 15 22 22 H 1.48506 * 109.46943 * 59.72961 * 19 17 15 23 23 C 1.46920 * 120.63026 * 176.18989 * 9 7 6 24 24 C 1.40056 * 118.23496 * 0.26133 * 6 5 4 25 25 N 1.32017 * 118.98877 * 359.48189 * 24 6 5 26 26 H 1.09004 * 109.47282 * 300.00017 * 1 2 3 27 27 H 1.09006 * 109.46999 * 59.99359 * 1 2 3 28 28 H 1.08994 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.50618 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.58547 * 6.57546 * 10 9 7 31 31 H 1.09000 * 109.70146 * 246.22245 * 10 9 7 32 32 H 1.08995 * 109.49579 * 294.68510 * 11 10 9 33 33 H 1.08994 * 109.52346 * 174.59909 * 11 10 9 34 34 H 1.09010 * 109.45879 * 178.61270 * 12 11 10 35 35 H 1.08997 * 109.46722 * 58.65861 * 12 11 10 36 36 H 0.97000 * 120.00535 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.58974 * 113.84372 * 23 9 7 38 38 H 1.09002 * 109.59022 * 353.42062 * 23 9 7 39 39 H 1.07992 * 120.50864 * 179.72668 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 3.3671 1.2522 0.0005 5 6 4.0051 2.4079 0.0010 6 6 3.2605 3.5942 0.0005 7 6 3.9308 4.9095 0.0016 8 8 4.8112 5.1437 -0.8034 9 7 3.5666 5.8507 0.8949 10 6 2.4492 5.6133 1.8190 11 6 2.9329 5.8604 3.2514 12 6 3.5397 7.2622 3.3458 13 6 4.7429 7.3635 2.4056 14 1 5.4807 6.6081 2.6761 15 6 5.3593 8.7337 2.5232 16 1 4.9358 9.4599 3.2012 17 6 6.4639 9.0601 1.7654 18 7 6.9794 8.1759 0.9395 19 14 7.2326 10.7558 1.9170 20 1 8.4029 10.8519 1.0079 21 1 6.2315 11.7880 1.5461 22 1 7.6745 10.9755 3.3176 23 6 4.2797 7.1334 0.9636 24 6 1.8631 3.4994 0.0050 25 7 1.3029 2.3040 -0.0008 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 5.0846 2.4382 0.0019 30 1 2.1070 4.5830 1.7214 31 1 1.6299 6.2939 1.5874 32 1 3.6875 5.1188 3.5135 33 1 2.0908 5.7814 3.9389 34 1 3.8624 7.4499 4.3700 35 1 2.7919 8.0017 3.0597 36 1 7.7567 8.4054 0.4066 37 1 3.6114 7.9398 0.6614 38 1 5.1453 7.1062 0.3017 39 1 1.2532 4.3906 0.0092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:02 Heat of formation + Delta-G solvation = -12.928758 kcal Electronic energy + Delta-G solvation = -23373.409469 eV Core-core repulsion = 19896.152532 eV Total energy + Delta-G solvation = -3477.256937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51189 -39.55758 -38.29391 -36.77030 -34.20719 -33.46628 -32.06884 -31.44037 -29.78760 -27.92051 -25.43049 -25.30536 -24.60642 -23.54572 -21.91660 -20.28304 -19.07645 -18.67137 -18.23614 -17.03257 -16.63670 -16.13325 -15.58343 -15.29325 -14.82078 -14.66845 -14.26907 -13.97728 -13.86378 -13.69139 -13.47062 -12.87764 -12.69064 -12.28438 -12.23216 -12.06497 -11.77655 -11.58037 -11.17206 -11.01399 -10.91031 -10.58544 -10.45469 -10.29634 -9.97745 -9.56854 -9.43072 -9.23108 -9.05554 -8.97098 -8.48682 -7.88614 -6.04720 -4.13553 0.59647 0.84603 2.33444 3.00678 3.29076 3.35843 3.36653 3.44443 3.68491 3.76770 4.34787 4.39415 4.50623 4.70115 4.91215 4.97515 4.98679 5.15925 5.25733 5.26951 5.37901 5.54409 5.55766 5.84221 5.90337 6.07490 6.22345 6.44149 6.52602 6.58156 6.76649 6.85758 6.89481 7.04350 7.14127 7.56081 7.79418 7.82035 7.91858 8.09893 8.31805 8.64726 8.90293 9.52514 11.00764 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.003805 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.202117 B = 7356.815830 C = 7872.680151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.288 6.288 3 C 0.503 3.497 4 N -0.523 5.523 5 C 0.236 3.764 6 C -0.260 4.260 7 C 0.561 3.439 8 O -0.524 6.524 9 N -0.595 5.595 10 C 0.101 3.899 11 C -0.133 4.133 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.030 0.970 15 C -0.523 4.523 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.881 5.881 19 Si 0.893 3.107 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.113 3.887 24 C 0.215 3.785 25 N -0.569 5.569 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.187 0.813 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.046 0.954 38 H 0.124 0.876 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.547 -11.473 0.084 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.189 6.189 3 C 0.201 3.799 4 N -0.248 5.248 5 C 0.069 3.931 6 C -0.268 4.268 7 C 0.345 3.655 8 O -0.401 6.401 9 N -0.327 5.327 10 C -0.023 4.023 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.048 0.952 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.518 5.518 19 Si 0.721 3.279 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.007 4.007 24 C 0.049 3.951 25 N -0.298 5.298 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.204 0.796 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.142 0.858 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.349 -12.601 -0.489 18.364 hybrid contribution 0.512 1.818 0.147 1.894 sum -12.838 -10.783 -0.343 16.769 Atomic orbital electron populations 1.23022 0.75564 1.03581 1.03038 1.86057 1.23481 1.22729 1.86636 1.20889 0.86364 0.84787 0.87828 1.67676 1.07259 1.29971 1.19893 1.23287 1.01018 0.84199 0.84549 1.21831 0.96405 0.97657 1.10927 1.17658 0.83080 0.82757 0.81993 1.90840 1.31107 1.79768 1.38348 1.48480 1.32993 1.17842 1.33399 1.21900 0.89457 1.00285 0.90661 1.21941 1.00293 1.00045 0.94895 1.21635 0.99080 0.93488 1.00643 1.18974 0.91843 0.97499 0.89570 0.95221 1.21027 1.12607 0.98213 1.24260 0.92355 1.25045 0.96653 0.97138 0.95123 1.69851 1.23006 1.33925 1.25025 0.86639 0.78819 0.84481 0.77958 1.21230 1.20240 1.20282 1.22398 0.96615 0.78797 1.02871 1.23224 0.91392 0.94524 0.85978 1.68064 1.40946 0.98982 1.21851 0.91705 0.91766 0.87842 0.79646 0.91355 0.91384 0.92129 0.92110 0.92886 0.93050 0.92497 0.93547 0.85766 0.80450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.35 101.05 1.05 1.39 16 2 O -0.29 -3.55 10.55 -17.56 -0.19 -3.74 16 3 C 0.50 7.00 8.48 -90.98 -0.77 6.23 16 4 N -0.52 -7.80 10.45 -14.39 -0.15 -7.95 16 5 C 0.24 3.43 11.05 -16.79 -0.19 3.24 16 6 C -0.26 -3.89 5.05 -104.70 -0.53 -4.42 16 7 C 0.56 10.54 7.28 -12.43 -0.09 10.45 16 8 O -0.52 -12.09 16.48 5.30 0.09 -12.00 16 9 N -0.60 -11.06 2.97 -173.96 -0.52 -11.57 16 10 C 0.10 1.44 5.39 -3.71 -0.02 1.42 16 11 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 12 C -0.11 -2.08 5.10 -26.69 -0.14 -2.21 16 13 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 14 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.52 -13.65 8.56 -34.44 -0.29 -13.95 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.88 -24.88 11.40 55.43 0.63 -24.25 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.11 2.57 5.39 -3.71 -0.02 2.55 16 24 C 0.21 2.71 8.66 -16.79 -0.15 2.56 16 25 N -0.57 -7.28 9.19 -14.39 -0.13 -7.41 16 26 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.06 0.48 8.09 -51.93 -0.42 0.07 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 30 H 0.07 0.84 4.49 -51.93 -0.23 0.61 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.12 3.35 5.15 -51.93 -0.27 3.08 16 39 H 0.18 1.80 7.04 -52.49 -0.37 1.43 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -31.27 322.95 -7.09 -38.35 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.06 Total: 0.54 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.61 Total: 7.42 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.17 Total: -51.19 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.10 Total: -15.74 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.27 -7.09 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.426 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds