Wall clock time and date at job start Tue Mar 31 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35290 * 117.00209 * 2 1 4 4 N 1.32472 * 119.02368 * 179.97438 * 3 2 1 5 5 C 1.32011 * 120.92006 * 180.02562 * 4 3 2 6 6 C 1.40062 * 118.98595 * 359.97438 * 5 4 3 7 7 C 1.47628 * 120.87982 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99847 * 49.95957 * 7 6 5 9 9 N 1.34780 * 120.00078 * 229.94880 * 7 6 5 10 10 C 1.46928 * 120.62922 * 356.21607 * 9 7 6 11 11 C 1.53192 * 108.77618 * 126.36525 * 10 9 7 12 12 C 1.53042 * 109.30688 * 54.63408 * 11 10 9 13 13 C 1.53040 * 109.54126 * 298.62929 * 12 11 10 14 14 H 1.08999 * 109.49820 * 301.39038 * 13 12 11 15 15 C 1.50705 * 109.49994 * 181.31713 * 13 12 11 16 16 H 1.07997 * 119.99737 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99805 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00462 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99632 * 180.27619 * 17 15 13 20 20 H 1.48500 * 109.47068 * 179.72354 * 19 17 15 21 21 H 1.48496 * 109.47409 * 299.73108 * 19 17 15 22 22 H 1.48506 * 109.46943 * 59.72961 * 19 17 15 23 23 C 1.46920 * 120.63026 * 176.18989 * 9 7 6 24 24 C 1.40056 * 118.23496 * 0.26133 * 6 5 4 25 25 N 1.32017 * 118.98877 * 359.48189 * 24 6 5 26 26 H 1.09004 * 109.47282 * 300.00017 * 1 2 3 27 27 H 1.09006 * 109.46999 * 59.99359 * 1 2 3 28 28 H 1.08994 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.50618 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.58547 * 6.57546 * 10 9 7 31 31 H 1.09000 * 109.70146 * 246.22245 * 10 9 7 32 32 H 1.08995 * 109.49579 * 294.68510 * 11 10 9 33 33 H 1.08994 * 109.52346 * 174.59909 * 11 10 9 34 34 H 1.09010 * 109.45879 * 178.61270 * 12 11 10 35 35 H 1.08997 * 109.46722 * 58.65861 * 12 11 10 36 36 H 0.97000 * 120.00535 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.58974 * 113.84372 * 23 9 7 38 38 H 1.09002 * 109.59022 * 353.42062 * 23 9 7 39 39 H 1.07992 * 120.50864 * 179.72668 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 3.3671 1.2522 0.0005 5 6 4.0051 2.4079 0.0010 6 6 3.2605 3.5942 0.0005 7 6 3.9308 4.9095 0.0016 8 8 4.8112 5.1437 -0.8034 9 7 3.5666 5.8507 0.8949 10 6 2.4492 5.6133 1.8190 11 6 2.9329 5.8604 3.2514 12 6 3.5397 7.2622 3.3458 13 6 4.7429 7.3635 2.4056 14 1 5.4807 6.6081 2.6761 15 6 5.3593 8.7337 2.5232 16 1 4.9358 9.4599 3.2012 17 6 6.4639 9.0601 1.7654 18 7 6.9794 8.1759 0.9395 19 14 7.2326 10.7558 1.9170 20 1 8.4029 10.8519 1.0079 21 1 6.2315 11.7880 1.5461 22 1 7.6745 10.9755 3.3176 23 6 4.2797 7.1334 0.9636 24 6 1.8631 3.4994 0.0050 25 7 1.3029 2.3040 -0.0008 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 5.0846 2.4382 0.0019 30 1 2.1070 4.5830 1.7214 31 1 1.6299 6.2939 1.5874 32 1 3.6875 5.1188 3.5135 33 1 2.0908 5.7814 3.9389 34 1 3.8624 7.4499 4.3700 35 1 2.7919 8.0017 3.0597 36 1 7.7567 8.4054 0.4066 37 1 3.6114 7.9398 0.6614 38 1 5.1453 7.1062 0.3017 39 1 1.2532 4.3906 0.0092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:01 Heat of formation + Delta-G solvation = -36.451455 kcal Electronic energy + Delta-G solvation = -23374.429490 eV Core-core repulsion = 19896.152532 eV Total energy + Delta-G solvation = -3478.276958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.60905 -40.92994 -39.33340 -38.33245 -35.53137 -35.01872 -33.64179 -32.70196 -31.41943 -28.71562 -27.10376 -26.72208 -25.76407 -24.79848 -23.45058 -21.80201 -20.21407 -19.98539 -19.34175 -18.60851 -17.94707 -17.55518 -17.03154 -16.54691 -16.31925 -15.95747 -15.48701 -15.27358 -15.11876 -14.89722 -14.67593 -14.51329 -14.33038 -13.80778 -13.56533 -13.05096 -12.90144 -12.83664 -12.78199 -12.41647 -12.27121 -12.22150 -12.14695 -11.77891 -11.62208 -11.19525 -10.95027 -10.76511 -10.50377 -10.49405 -10.17699 -9.45997 -8.09278 -6.25570 -0.52178 -0.21408 1.41311 1.43869 1.44237 1.52625 1.59341 2.07744 2.44096 2.50523 2.76729 3.19071 3.27766 3.43322 3.54265 3.84418 3.98505 4.14456 4.32534 4.38271 4.41965 4.54505 4.58794 4.68573 4.72885 4.78183 4.83753 4.88256 5.10371 5.24157 5.27260 5.35525 5.43823 5.53152 5.62537 5.88201 5.92183 6.01233 6.34330 6.54919 6.77180 6.86593 7.16599 7.44664 8.93986 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.003805 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.202117 B = 7356.815830 C = 7872.680151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.299 6.299 3 C 0.501 3.499 4 N -0.542 5.542 5 C 0.237 3.763 6 C -0.271 4.271 7 C 0.562 3.438 8 O -0.579 6.579 9 N -0.596 5.596 10 C 0.097 3.903 11 C -0.128 4.128 12 C -0.105 4.105 13 C 0.038 3.962 14 H -0.013 1.013 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.012 3.988 18 N -0.914 5.914 19 Si 0.955 3.045 20 H -0.290 1.290 21 H -0.267 1.267 22 H -0.270 1.270 23 C 0.127 3.873 24 C 0.233 3.767 25 N -0.558 5.558 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.187 0.813 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 -11.898 1.087 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.200 3.800 4 N -0.268 5.268 5 C 0.070 3.930 6 C -0.280 4.280 7 C 0.349 3.651 8 O -0.459 6.459 9 N -0.327 5.327 10 C -0.024 4.024 11 C -0.165 4.165 12 C -0.142 4.142 13 C 0.019 3.981 14 H 0.005 0.995 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.188 4.188 18 N -0.552 5.552 19 Si 0.780 3.220 20 H -0.216 1.216 21 H -0.192 1.192 22 H -0.196 1.196 23 C 0.005 3.995 24 C 0.067 3.933 25 N -0.288 5.288 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.204 0.796 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -16.553 -13.057 0.553 21.090 hybrid contribution 1.415 1.855 -0.143 2.338 sum -15.137 -11.202 0.411 18.836 Atomic orbital electron populations 1.23389 0.73129 1.05837 1.03511 1.86078 1.25868 1.22025 1.86000 1.21166 0.86301 0.85677 0.86832 1.67701 1.08213 1.29832 1.21016 1.23318 1.01323 0.84247 0.84078 1.21418 0.97484 0.95290 1.13792 1.18119 0.82297 0.83776 0.80952 1.90808 1.33665 1.80891 1.40563 1.48436 1.33700 1.16412 1.34146 1.22250 0.88457 1.02752 0.88991 1.21910 1.01240 0.96943 0.96455 1.21518 0.97293 0.96445 0.98993 1.18913 0.92971 0.94966 0.91280 0.99460 1.21480 1.12716 0.99482 1.23738 0.91955 1.25845 0.97417 1.00579 0.94926 1.70048 1.23318 1.35823 1.26054 0.85658 0.77896 0.80444 0.77954 1.21633 1.19167 1.19562 1.21799 0.95506 0.80953 1.01266 1.23641 0.90333 0.95511 0.83854 1.68220 1.40097 0.98618 1.21849 0.91031 0.91375 0.84843 0.79591 0.88681 0.88338 0.93513 0.87809 0.93097 0.91910 0.93102 0.93580 0.90319 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.35 113.37 1.17 1.62 16 2 O -0.30 -6.66 10.55 -85.76 -0.90 -7.57 16 3 C 0.50 12.90 8.48 180.48 1.53 14.43 16 4 N -0.54 -15.65 10.45 -312.41 -3.26 -18.92 16 5 C 0.24 6.84 11.05 85.11 0.94 7.78 16 6 C -0.27 -7.86 5.05 -19.91 -0.10 -7.96 16 7 C 0.56 21.42 7.28 86.72 0.63 22.05 16 8 O -0.58 -28.13 16.48 -3.94 -0.07 -28.19 16 9 N -0.60 -21.95 2.97 -822.56 -2.44 -24.39 16 10 C 0.10 2.47 5.39 86.36 0.47 2.93 16 11 C -0.13 -3.50 6.08 30.67 0.19 -3.31 16 12 C -0.10 -3.78 5.10 30.62 0.16 -3.63 16 13 C 0.04 1.82 2.25 -11.46 -0.03 1.80 16 14 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 15 C -0.54 -28.50 8.56 25.60 0.22 -28.28 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 17 C 0.01 0.66 5.30 84.66 0.45 1.11 16 18 N -0.91 -54.13 11.40 21.45 0.24 -53.89 16 19 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C 0.13 5.93 5.39 86.36 0.47 6.40 16 24 C 0.23 5.17 8.66 85.11 0.74 5.91 16 25 N -0.56 -12.55 9.19 -312.41 -2.87 -15.42 16 26 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 27 H 0.07 0.82 8.09 -2.38 -0.02 0.80 16 28 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.19 5.15 8.06 -2.91 -0.02 5.12 16 30 H 0.10 1.95 4.49 -2.39 -0.01 1.94 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.08 4.49 5.15 -2.39 -0.01 4.47 16 39 H 0.21 3.28 7.04 -2.91 -0.02 3.26 16 Total: -1.00 -72.16 322.95 0.62 -71.54 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.07 Total: 10.67 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 6.83 Total: 20.85 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -8.33 Total: -112.61 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.97 Total: -35.76 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -72.16 0.62 -71.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.091 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds