Wall clock time and date at job start Tue Mar 31 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21304 * 120.00126 * 2 1 4 4 N 1.34779 * 120.00242 * 179.97438 * 2 1 3 5 5 C 1.40152 * 120.00324 * 184.48539 * 4 2 1 6 6 C 1.38672 * 120.09510 * 325.31761 * 5 4 2 7 7 C 1.38230 * 120.00442 * 179.97438 * 6 5 4 8 8 C 1.38289 * 120.19769 * 359.96400 * 7 6 5 9 9 C 1.38227 * 120.19387 * 359.97438 * 8 7 6 10 10 C 1.38717 * 119.99409 * 0.02562 * 9 8 7 11 11 N 1.39892 * 120.09656 * 179.97438 * 10 9 8 12 12 C 1.46498 * 120.00194 * 359.97438 * 11 10 9 13 13 C 1.50705 * 109.46938 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00039 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99466 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99834 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47299 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99827 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99887 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00438 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99758 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47302 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47131 * 120.00178 * 21 19 17 24 24 H 1.48502 * 109.47295 * 239.99749 * 21 19 17 25 25 H 1.08999 * 109.47643 * 270.00735 * 1 2 3 26 26 H 1.09004 * 109.47051 * 30.00545 * 1 2 3 27 27 H 1.09003 * 109.47148 * 150.00697 * 1 2 3 28 28 H 0.97001 * 119.99618 * 4.48649 * 4 2 1 29 29 H 1.08003 * 119.99636 * 359.97438 * 6 5 4 30 30 H 1.07992 * 119.90317 * 179.97438 * 7 6 5 31 31 H 1.07994 * 119.90150 * 180.02562 * 8 7 6 32 32 H 1.08004 * 120.00154 * 179.75302 * 9 8 7 33 33 H 0.97005 * 120.00005 * 180.02562 * 11 10 9 34 34 H 1.08998 * 109.46726 * 300.00314 * 12 11 10 35 35 H 1.09001 * 109.46986 * 60.00029 * 12 11 10 36 36 H 0.97003 * 120.00495 * 0.02562 * 15 13 12 37 37 H 1.09009 * 109.46602 * 300.00440 * 16 15 13 38 38 H 1.08999 * 109.46798 * 60.00318 * 16 15 13 39 39 H 0.96995 * 120.00371 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5791 -1.1690 0.0954 6 6 4.3178 -0.1577 -0.5000 7 6 5.6969 -0.1611 -0.4047 8 6 6.3441 -1.1706 0.2840 9 6 5.6157 -2.1820 0.8817 10 6 4.2315 -2.1865 0.7911 11 7 3.4924 -3.2094 1.3947 12 6 4.1800 -4.2782 2.1233 13 6 3.1638 -5.2461 2.6725 14 8 1.9817 -5.0616 2.4744 15 7 3.5689 -6.3174 3.3830 16 6 2.5811 -7.2587 3.9165 17 6 3.2885 -8.3581 4.6661 18 1 4.3661 -8.3561 4.7376 19 6 2.5599 -9.3664 5.2606 20 7 1.2477 -9.3686 5.1739 21 14 3.4369 -10.7296 6.1892 22 1 4.9028 -10.4980 6.1405 23 1 2.9839 -10.7359 7.6034 24 1 3.1208 -12.0382 5.5624 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5137 28 1 1.6981 -2.0060 -0.0648 29 1 3.8157 0.6327 -1.0381 30 1 6.2705 0.6271 -0.8694 31 1 7.4216 -1.1683 0.3558 32 1 6.1246 -2.9711 1.4154 33 1 2.5245 -3.2114 1.3302 34 1 4.8536 -4.8041 1.4467 35 1 4.7531 -3.8477 2.9445 36 1 4.5145 -6.4652 3.5412 37 1 1.9071 -6.7333 4.5932 38 1 2.0085 -7.6889 3.0948 39 1 0.7351 -10.0781 5.5918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863354463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:53 Heat of formation + Delta-G solvation = -46.562301 kcal Electronic energy + Delta-G solvation = -22053.950855 eV Core-core repulsion = 18575.235458 eV Total energy + Delta-G solvation = -3478.715397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.69805 -39.29542 -38.50057 -35.34552 -34.76971 -34.31277 -32.48229 -31.02701 -30.02472 -28.81533 -27.68818 -25.99966 -23.28691 -22.52830 -21.54555 -20.58001 -19.93819 -18.59168 -17.20918 -17.06753 -16.64622 -16.09008 -15.63270 -15.40992 -15.33406 -14.94919 -14.62890 -14.19410 -14.03691 -13.78254 -13.62567 -13.36612 -12.91114 -12.74405 -12.71717 -12.35330 -12.07946 -11.79951 -11.74432 -11.47280 -11.04991 -10.98854 -10.46475 -10.41757 -10.15505 -9.91064 -9.50151 -9.36210 -8.86006 -8.45589 -8.08815 -7.30290 -6.26291 -4.33861 1.29433 1.56867 2.43635 2.89552 3.07251 3.17661 3.22149 3.26183 3.29058 3.86063 3.98478 4.28057 4.53910 4.85221 4.94858 5.03979 5.10381 5.14115 5.16140 5.30265 5.33557 5.38055 5.47311 5.49927 5.60959 5.81966 6.09437 6.23831 6.46917 6.61733 6.80779 7.10313 7.17352 7.20666 7.29205 7.37039 7.53626 7.65784 7.85101 7.96873 8.41281 8.61732 8.86326 9.33034 10.83875 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024001 B = 0.002866 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.327836 B = 9767.521504 C =10854.715808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.534 6.534 4 N -0.668 5.668 5 C 0.063 3.937 6 C -0.073 4.073 7 C -0.168 4.168 8 C -0.082 4.082 9 C -0.188 4.188 10 C 0.205 3.795 11 N -0.733 5.733 12 C 0.105 3.895 13 C 0.493 3.507 14 O -0.556 6.556 15 N -0.704 5.704 16 C 0.249 3.751 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.408 0.592 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.406 0.594 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.394 0.606 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 15.235 -10.865 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.410 6.410 4 N -0.315 5.315 5 C -0.034 4.034 6 C -0.094 4.094 7 C -0.189 4.189 8 C -0.101 4.101 9 C -0.212 4.212 10 C 0.100 3.900 11 N -0.366 5.366 12 C -0.024 4.024 13 C 0.277 3.723 14 O -0.435 6.435 15 N -0.352 5.352 16 C 0.129 3.871 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.244 0.756 29 H 0.154 0.846 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.245 0.755 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.227 0.773 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.154 15.831 -10.804 19.847 hybrid contribution 0.207 -1.444 0.685 1.612 sum 5.360 14.388 -10.118 18.388 Atomic orbital electron populations 1.21895 0.90865 1.05124 1.05319 1.20953 0.90791 0.83104 0.75185 1.90705 1.70451 1.31273 1.48565 1.43461 1.05225 1.09748 1.73040 1.17223 0.82416 0.99065 1.04683 1.21026 0.93600 0.97466 0.97277 1.20796 0.93814 1.00306 1.03936 1.20891 0.99445 0.93542 0.96269 1.20516 0.91086 1.02268 1.07283 1.17646 0.91478 0.88660 0.92230 1.44304 1.08991 1.24647 1.58705 1.21112 0.94997 0.89110 0.97131 1.20336 0.89464 0.82726 0.79749 1.90637 1.17893 1.75100 1.59915 1.46423 1.11861 1.24749 1.52196 1.19171 0.87422 0.86416 0.94114 1.21237 0.93588 1.08541 1.35003 0.91722 1.24956 0.94865 0.98113 0.96058 1.69973 1.05214 1.33464 1.43557 0.86341 0.79653 0.81356 0.79455 1.19571 1.20745 1.20738 0.88353 0.88625 0.89856 0.75603 0.84610 0.86269 0.86134 0.85617 0.75539 0.89478 0.89539 0.77327 0.95363 0.95348 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.31 36.00 0.37 -0.86 16 2 C 0.51 5.79 7.79 -10.99 -0.09 5.70 16 3 O -0.53 -7.93 14.52 5.54 0.08 -7.85 16 4 N -0.67 -7.36 5.02 -9.71 -0.05 -7.41 16 5 C 0.06 0.81 6.33 -83.44 -0.53 0.28 16 6 C -0.07 -0.93 8.70 -39.42 -0.34 -1.27 16 7 C -0.17 -1.86 10.04 -39.57 -0.40 -2.26 16 8 C -0.08 -0.86 10.04 -39.57 -0.40 -1.26 16 9 C -0.19 -2.13 9.31 -39.41 -0.37 -2.50 16 10 C 0.21 2.60 6.67 -83.55 -0.56 2.04 16 11 N -0.73 -9.59 5.69 -59.65 -0.34 -9.93 16 12 C 0.10 1.34 5.40 -5.19 -0.03 1.31 16 13 C 0.49 8.82 7.90 -10.98 -0.09 8.73 16 14 O -0.56 -11.96 15.67 5.56 0.09 -11.87 16 15 N -0.70 -13.52 5.55 -61.47 -0.34 -13.86 16 16 C 0.25 6.25 5.43 -5.19 -0.03 6.22 16 17 C -0.55 -14.18 9.28 -34.44 -0.32 -14.49 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.88 -25.29 13.29 55.43 0.74 -24.55 16 21 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.41 3.73 7.71 -40.82 -0.31 3.41 16 29 H 0.14 1.81 6.20 -52.48 -0.33 1.48 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.21 6.74 -52.48 -0.35 0.86 16 33 H 0.41 5.59 6.05 -40.82 -0.25 5.35 16 34 H 0.09 0.94 7.95 -51.93 -0.41 0.53 16 35 H 0.09 0.97 7.96 -51.93 -0.41 0.56 16 36 H 0.39 6.32 8.32 -40.82 -0.34 5.98 16 37 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -33.12 336.87 -7.53 -40.65 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.90 Total: 11.29 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -2.86 Total: 3.27 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.01 Total: -55.75 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.17 Total: -19.72 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.12 -7.53 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863354463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.911 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds