Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21304 * 120.00126 * 2 1 4 4 N 1.34779 * 120.00242 * 179.97438 * 2 1 3 5 5 C 1.40152 * 120.00324 * 184.48539 * 4 2 1 6 6 C 1.38672 * 120.09510 * 325.31761 * 5 4 2 7 7 C 1.38230 * 120.00442 * 179.97438 * 6 5 4 8 8 C 1.38289 * 120.19769 * 359.96400 * 7 6 5 9 9 C 1.38227 * 120.19387 * 359.97438 * 8 7 6 10 10 C 1.38717 * 119.99409 * 0.02562 * 9 8 7 11 11 N 1.39892 * 120.09656 * 179.97438 * 10 9 8 12 12 C 1.46498 * 120.00194 * 359.97438 * 11 10 9 13 13 C 1.50705 * 109.46938 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00039 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99466 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99834 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47299 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99827 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99887 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00438 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99758 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47302 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47131 * 120.00178 * 21 19 17 24 24 H 1.48502 * 109.47295 * 239.99749 * 21 19 17 25 25 H 1.08999 * 109.47643 * 270.00735 * 1 2 3 26 26 H 1.09004 * 109.47051 * 30.00545 * 1 2 3 27 27 H 1.09003 * 109.47148 * 150.00697 * 1 2 3 28 28 H 0.97001 * 119.99618 * 4.48649 * 4 2 1 29 29 H 1.08003 * 119.99636 * 359.97438 * 6 5 4 30 30 H 1.07992 * 119.90317 * 179.97438 * 7 6 5 31 31 H 1.07994 * 119.90150 * 180.02562 * 8 7 6 32 32 H 1.08004 * 120.00154 * 179.75302 * 9 8 7 33 33 H 0.97005 * 120.00005 * 180.02562 * 11 10 9 34 34 H 1.08998 * 109.46726 * 300.00314 * 12 11 10 35 35 H 1.09001 * 109.46986 * 60.00029 * 12 11 10 36 36 H 0.97003 * 120.00495 * 0.02562 * 15 13 12 37 37 H 1.09009 * 109.46602 * 300.00440 * 16 15 13 38 38 H 1.08999 * 109.46798 * 60.00318 * 16 15 13 39 39 H 0.96995 * 120.00371 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5791 -1.1690 0.0954 6 6 4.3178 -0.1577 -0.5000 7 6 5.6969 -0.1611 -0.4047 8 6 6.3441 -1.1706 0.2840 9 6 5.6157 -2.1820 0.8817 10 6 4.2315 -2.1865 0.7911 11 7 3.4924 -3.2094 1.3947 12 6 4.1800 -4.2782 2.1233 13 6 3.1638 -5.2461 2.6725 14 8 1.9817 -5.0616 2.4744 15 7 3.5689 -6.3174 3.3830 16 6 2.5811 -7.2587 3.9165 17 6 3.2885 -8.3581 4.6661 18 1 4.3661 -8.3561 4.7376 19 6 2.5599 -9.3664 5.2606 20 7 1.2477 -9.3686 5.1739 21 14 3.4369 -10.7296 6.1892 22 1 4.9028 -10.4980 6.1405 23 1 2.9839 -10.7359 7.6034 24 1 3.1208 -12.0382 5.5624 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5137 28 1 1.6981 -2.0060 -0.0648 29 1 3.8157 0.6327 -1.0381 30 1 6.2705 0.6271 -0.8694 31 1 7.4216 -1.1683 0.3558 32 1 6.1246 -2.9711 1.4154 33 1 2.5245 -3.2114 1.3302 34 1 4.8536 -4.8041 1.4467 35 1 4.7531 -3.8477 2.9445 36 1 4.5145 -6.4652 3.5412 37 1 1.9071 -6.7333 4.5932 38 1 2.0085 -7.6889 3.0948 39 1 0.7351 -10.0781 5.5918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863354463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -71.465685 kcal Electronic energy + Delta-G solvation = -22055.030747 eV Core-core repulsion = 18575.235458 eV Total energy + Delta-G solvation = -3479.795289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.61489 -40.68119 -39.52165 -36.50342 -35.98505 -35.68095 -34.39282 -31.80398 -31.12315 -29.81640 -29.12061 -27.28358 -24.71567 -23.84229 -22.52634 -21.61823 -21.29135 -19.70123 -18.67822 -17.96637 -17.75267 -17.49010 -16.91000 -16.74787 -16.66058 -16.29804 -15.65236 -15.41099 -14.99042 -14.96079 -14.70459 -14.56882 -14.15819 -14.01863 -13.86790 -13.47811 -13.36121 -13.05850 -12.91741 -12.76034 -12.56787 -12.33060 -12.22529 -11.46652 -11.36096 -11.09776 -10.93155 -10.83163 -10.82480 -9.89232 -9.34626 -8.30160 -8.23276 -6.46103 0.41297 0.66826 1.44379 1.44539 1.57168 1.57979 1.62892 1.96733 2.19107 2.38707 2.73486 2.98581 3.05673 3.78689 3.81586 3.97502 4.25189 4.33900 4.40059 4.41061 4.50278 4.57742 4.63527 4.66868 4.90779 5.03306 5.09422 5.23084 5.23797 5.39459 5.44863 5.61552 5.63738 5.75310 5.83249 5.92258 6.26169 6.41750 6.61131 6.65550 6.83263 7.10948 7.21995 7.39171 8.82005 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024001 B = 0.002866 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.327836 B = 9767.521504 C =10854.715808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.504 3.496 3 O -0.575 6.575 4 N -0.664 5.664 5 C 0.045 3.955 6 C -0.092 4.092 7 C -0.170 4.170 8 C -0.080 4.080 9 C -0.190 4.190 10 C 0.192 3.808 11 N -0.741 5.741 12 C 0.120 3.880 13 C 0.492 3.508 14 O -0.596 6.596 15 N -0.700 5.700 16 C 0.266 3.734 17 C -0.554 4.554 18 H 0.086 0.914 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.982 3.018 22 H -0.252 1.252 23 H -0.281 1.281 24 H -0.280 1.280 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.415 0.585 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.401 0.599 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.412 0.588 37 H -0.011 1.011 38 H -0.009 1.009 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.331 14.842 -10.675 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.294 3.706 3 O -0.455 6.455 4 N -0.311 5.311 5 C -0.052 4.052 6 C -0.113 4.113 7 C -0.191 4.191 8 C -0.099 4.099 9 C -0.213 4.213 10 C 0.088 3.912 11 N -0.374 5.374 12 C -0.007 4.007 13 C 0.279 3.721 14 O -0.478 6.478 15 N -0.349 5.349 16 C 0.143 3.857 17 C -0.592 4.592 18 H 0.104 0.896 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.805 3.195 22 H -0.175 1.175 23 H -0.207 1.207 24 H -0.206 1.206 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.253 0.747 29 H 0.140 0.860 30 H 0.155 0.845 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.237 0.763 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.249 0.751 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.815 15.448 -10.635 20.318 hybrid contribution -0.608 -1.242 0.566 1.495 sum 7.206 14.206 -10.068 18.844 Atomic orbital electron populations 1.21927 0.87628 1.06630 1.06251 1.21717 0.92355 0.82460 0.74038 1.90679 1.71598 1.32602 1.50590 1.43512 1.04946 1.10147 1.72475 1.17465 0.83222 0.99404 1.05118 1.21073 0.94596 0.97470 0.98121 1.21096 0.93277 1.01037 1.03654 1.21239 1.00967 0.92604 0.95104 1.20865 0.90518 1.02932 1.06950 1.17771 0.92140 0.88568 0.92768 1.44296 1.08769 1.25027 1.59301 1.21103 0.93238 0.87992 0.98375 1.21231 0.89952 0.82560 0.78401 1.90622 1.20265 1.75910 1.61010 1.46095 1.11785 1.24479 1.52590 1.18575 0.87958 0.87032 0.92126 1.21655 0.94658 1.08436 1.34472 0.89611 1.26026 0.95506 1.00979 0.97037 1.70127 1.07213 1.34655 1.44934 0.85147 0.79245 0.77549 0.77512 1.17515 1.20689 1.20605 0.87515 0.87851 0.87639 0.74725 0.86013 0.84481 0.83107 0.83459 0.76257 0.86446 0.86935 0.75126 0.99272 0.99110 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.31 71.23 0.73 -1.52 16 2 C 0.50 11.58 7.79 87.65 0.68 12.27 16 3 O -0.58 -17.71 14.52 -3.10 -0.05 -17.75 16 4 N -0.66 -14.76 5.02 -303.02 -1.52 -16.28 16 5 C 0.05 1.15 6.33 38.21 0.24 1.39 16 6 C -0.09 -2.34 8.70 22.37 0.19 -2.14 16 7 C -0.17 -3.52 10.04 22.28 0.22 -3.29 16 8 C -0.08 -1.43 10.04 22.28 0.22 -1.21 16 9 C -0.19 -3.72 9.31 22.38 0.21 -3.52 16 10 C 0.19 4.56 6.67 38.26 0.26 4.81 16 11 N -0.74 -18.30 5.69 -342.63 -1.95 -20.25 16 12 C 0.12 2.76 5.40 85.64 0.46 3.22 16 13 C 0.49 17.23 7.90 87.66 0.69 17.92 16 14 O -0.60 -26.15 15.67 -3.01 -0.05 -26.20 16 15 N -0.70 -26.40 5.55 -466.77 -2.59 -28.99 16 16 C 0.27 13.70 5.43 85.63 0.46 14.16 16 17 C -0.55 -28.63 9.28 25.60 0.24 -28.39 16 18 H 0.09 3.97 7.60 -2.91 -0.02 3.95 16 19 C 0.00 0.23 5.46 84.65 0.46 0.69 16 20 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 21 Si 0.98 40.83 29.54 68.60 2.03 42.86 16 22 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.42 7.64 7.71 -92.71 -0.71 6.93 16 29 H 0.12 3.39 6.20 -2.91 -0.02 3.37 16 30 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.15 2.18 6.74 -2.91 -0.02 2.16 16 33 H 0.40 10.89 6.05 -92.70 -0.56 10.33 16 34 H 0.12 2.06 7.95 -2.39 -0.02 2.04 16 35 H 0.11 2.08 7.96 -2.39 -0.02 2.06 16 36 H 0.41 12.34 8.32 -92.71 -0.77 11.56 16 37 H -0.01 -0.63 8.14 -2.38 -0.02 -0.64 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -74.72 336.87 0.30 -74.42 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.94 Total: 31.91 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.08 Total: 14.39 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -5.77 Total: -119.63 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.09 Total: -43.95 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -74.72 0.30 -74.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863354463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.953 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds