Wall clock time and date at job start Tue Mar 31 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21277 * 119.99870 * 2 1 4 4 N 1.34772 * 120.00211 * 180.02562 * 2 1 3 5 5 C 1.39273 * 120.00093 * 183.91133 * 4 2 1 6 6 C 1.39481 * 120.55635 * 333.97842 * 5 4 2 7 7 C 1.38274 * 118.43010 * 180.26203 * 6 5 4 8 8 C 1.38784 * 119.45599 * 359.49104 * 7 6 5 9 9 N 1.31378 * 121.09974 * 0.27220 * 8 7 6 10 10 C 1.32845 * 121.71366 * 359.97438 * 9 8 7 11 11 C 1.47814 * 119.79602 * 180.02562 * 10 9 8 12 12 O 1.21560 * 119.99728 * 174.37692 * 11 10 9 13 13 N 1.34781 * 119.99925 * 354.37573 * 11 10 9 14 14 C 1.46500 * 119.99992 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46923 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46871 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47002 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99863 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99830 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99983 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46955 * 59.99949 * 21 19 17 23 23 H 1.48500 * 109.47186 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46960 * 299.99777 * 21 19 17 25 25 H 1.08996 * 109.47194 * 269.99759 * 1 2 3 26 26 H 1.09002 * 109.47157 * 29.99884 * 1 2 3 27 27 H 1.08998 * 109.47307 * 149.99818 * 1 2 3 28 28 H 0.97000 * 120.00200 * 3.90037 * 4 2 1 29 29 H 1.08006 * 120.78260 * 0.02562 * 6 5 4 30 30 H 1.07995 * 120.26794 * 179.76761 * 7 6 5 31 31 H 1.07993 * 119.44848 * 180.25344 * 8 7 6 32 32 H 0.96998 * 119.99937 * 0.02562 * 13 11 10 33 33 H 1.08999 * 109.46424 * 299.99896 * 14 13 11 34 34 H 1.08996 * 109.47091 * 59.99121 * 14 13 11 35 35 H 1.08997 * 109.46760 * 299.99443 * 15 14 13 36 36 H 1.09001 * 109.47101 * 59.99735 * 15 14 13 37 37 H 1.09001 * 109.47192 * 299.99956 * 16 15 14 38 38 H 1.08998 * 109.46750 * 60.00029 * 16 15 14 39 39 H 0.97006 * 120.00330 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5712 -1.1686 0.0818 6 6 4.3091 -0.0723 -0.3648 7 6 5.6874 -0.1229 -0.2674 8 6 6.2924 -1.2473 0.2765 9 7 5.5776 -2.2668 0.6955 10 6 4.2514 -2.2683 0.6189 11 6 3.4889 -3.4382 1.1037 12 8 2.2741 -3.4032 1.1306 13 7 4.1407 -4.5435 1.5160 14 6 3.3850 -5.7032 1.9960 15 6 4.3570 -6.8134 2.4003 16 6 3.5678 -8.0244 2.9021 17 6 4.5252 -9.1177 3.3010 18 1 5.5901 -8.9641 3.2064 19 6 4.0417 -10.3141 3.7866 20 7 2.7451 -10.5009 3.9022 21 14 5.2284 -11.6696 4.2803 22 1 6.1199 -11.1776 5.3613 23 1 4.4625 -12.8448 4.7675 24 1 6.0463 -12.0637 3.1051 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6976 -2.0062 -0.0580 29 1 3.8156 0.7939 -0.7804 30 1 6.2880 0.7077 -0.6076 31 1 7.3687 -1.2849 0.3563 32 1 5.1100 -4.5712 1.4949 33 1 2.7851 -5.4140 2.8588 34 1 2.7303 -6.0639 1.2027 35 1 4.9573 -7.1026 1.5377 36 1 5.0114 -6.4523 3.1937 37 1 2.9678 -7.7348 3.7648 38 1 2.9133 -8.3855 2.1089 39 1 2.4049 -11.3425 4.2443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865167370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:55 Heat of formation + Delta-G solvation = -44.564579 kcal Electronic energy + Delta-G solvation = -22087.750251 eV Core-core repulsion = 18609.121482 eV Total energy + Delta-G solvation = -3478.628769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42589 -39.69532 -38.89616 -35.85944 -35.05267 -33.40441 -32.63388 -31.54286 -30.98295 -29.20037 -26.92478 -24.86098 -23.92996 -22.82488 -21.15004 -20.70213 -20.37516 -18.24190 -17.95125 -17.43552 -16.58463 -16.29537 -15.74014 -15.45845 -15.38858 -15.10210 -14.50726 -14.43287 -14.37874 -13.70964 -13.50346 -13.37891 -13.06508 -12.81400 -12.61838 -12.29114 -11.87162 -11.78279 -11.33876 -10.89341 -10.77517 -10.64605 -10.58828 -10.30272 -9.99696 -9.88344 -9.63221 -9.38873 -9.14500 -8.94134 -8.53075 -8.37785 -6.02729 -4.05735 0.36818 0.91235 2.22044 2.62364 2.79386 3.16743 3.32072 3.36659 3.39018 3.66363 4.03361 4.32356 4.43802 4.57059 4.58750 4.75261 4.87701 5.02292 5.06340 5.16260 5.33162 5.49163 5.58137 5.69806 5.72832 5.85044 5.90417 6.11571 6.36637 6.41321 6.56863 6.77580 6.96902 7.09222 7.39080 7.61820 7.69067 7.71511 7.74219 7.95793 8.19135 8.37374 9.00649 9.58527 11.08558 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.002753 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.257086 B =10166.638340 C =11186.134542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.512 3.488 3 O -0.534 6.534 4 N -0.651 5.651 5 C 0.160 3.840 6 C -0.105 4.105 7 C -0.129 4.129 8 C 0.076 3.924 9 N -0.436 5.436 10 C 0.041 3.959 11 C 0.571 3.429 12 O -0.550 6.550 13 N -0.697 5.697 14 C 0.113 3.887 15 C -0.122 4.122 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.430 0.570 29 H 0.167 0.833 30 H 0.143 0.857 31 H 0.165 0.835 32 H 0.411 0.589 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 22.367 -10.461 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.302 3.698 3 O -0.412 6.412 4 N -0.302 5.302 5 C 0.059 3.941 6 C -0.133 4.133 7 C -0.149 4.149 8 C -0.086 4.086 9 N -0.147 5.147 10 C -0.100 4.100 11 C 0.356 3.644 12 O -0.430 6.430 13 N -0.345 5.345 14 C -0.009 4.009 15 C -0.160 4.160 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.275 0.725 29 H 0.185 0.815 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.247 0.753 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.772 22.158 -9.987 24.317 hybrid contribution 0.534 -0.512 -0.008 0.740 sum 1.306 21.645 -9.996 23.878 Atomic orbital electron populations 1.21879 0.90098 1.05360 1.05614 1.21181 0.91364 0.82783 0.74471 1.90627 1.70307 1.31710 1.48514 1.44068 1.04438 1.11938 1.69741 1.18725 0.84509 0.95162 0.95696 1.22131 0.93781 0.99015 0.98324 1.22342 0.94874 0.99404 0.98310 1.22762 1.00470 0.88947 0.96443 1.67537 1.05159 1.28145 1.13820 1.20993 0.90487 0.95657 1.02828 1.17739 0.86540 0.82247 0.77892 1.90553 1.13189 1.82188 1.57041 1.46059 1.11600 1.14214 1.62662 1.21775 0.95355 0.84468 0.99282 1.21907 0.98035 0.95602 1.00449 1.19021 0.95307 0.90506 0.96429 1.21174 0.93071 0.98951 1.42951 0.92640 1.25021 0.95098 0.98572 0.95728 1.69951 1.11887 1.25363 1.46160 0.86637 0.80959 0.81338 0.78944 1.20224 1.21278 1.20222 0.88056 0.88384 0.89500 0.72456 0.81536 0.83902 0.81816 0.75299 0.91382 0.91347 0.92551 0.92533 0.96267 0.96266 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.31 36.00 0.37 -0.73 16 2 C 0.51 5.40 7.83 -10.99 -0.09 5.32 16 3 O -0.53 -6.97 14.08 5.56 0.08 -6.89 16 4 N -0.65 -7.43 4.82 -9.60 -0.05 -7.47 16 5 C 0.16 2.00 6.47 -83.35 -0.54 1.46 16 6 C -0.10 -1.13 8.88 -39.11 -0.35 -1.48 16 7 C -0.13 -1.09 10.10 -39.37 -0.40 -1.49 16 8 C 0.08 0.70 11.17 -17.54 -0.20 0.50 16 9 N -0.44 -5.33 9.55 -9.68 -0.09 -5.42 16 10 C 0.04 0.55 6.76 -82.84 -0.56 -0.01 16 11 C 0.57 8.67 7.78 -12.34 -0.10 8.57 16 12 O -0.55 -9.01 13.81 5.31 0.07 -8.94 16 13 N -0.70 -10.52 5.54 -61.26 -0.34 -10.86 16 14 C 0.11 1.96 5.67 -4.04 -0.02 1.93 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 21 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.43 4.85 6.07 -40.82 -0.25 4.60 16 29 H 0.17 1.83 5.67 -52.48 -0.30 1.53 16 30 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.41 5.67 7.81 -40.82 -0.32 5.35 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -33.01 336.73 -7.16 -40.17 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.06 Total: 5.15 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.56 Total: -1.30 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.26 Total: -49.68 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.15 Total: -15.84 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.01 -7.16 -40.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865167370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.397 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds