Wall clock time and date at job start Tue Mar 31 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21277 * 119.99870 * 2 1 4 4 N 1.34772 * 120.00211 * 180.02562 * 2 1 3 5 5 C 1.39273 * 120.00093 * 183.91133 * 4 2 1 6 6 C 1.39481 * 120.55635 * 333.97842 * 5 4 2 7 7 C 1.38274 * 118.43010 * 180.26203 * 6 5 4 8 8 C 1.38784 * 119.45599 * 359.49104 * 7 6 5 9 9 N 1.31378 * 121.09974 * 0.27220 * 8 7 6 10 10 C 1.32845 * 121.71366 * 359.97438 * 9 8 7 11 11 C 1.47814 * 119.79602 * 180.02562 * 10 9 8 12 12 O 1.21560 * 119.99728 * 174.37692 * 11 10 9 13 13 N 1.34781 * 119.99925 * 354.37573 * 11 10 9 14 14 C 1.46500 * 119.99992 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46923 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46871 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47002 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99863 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99830 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99983 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46955 * 59.99949 * 21 19 17 23 23 H 1.48500 * 109.47186 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46960 * 299.99777 * 21 19 17 25 25 H 1.08996 * 109.47194 * 269.99759 * 1 2 3 26 26 H 1.09002 * 109.47157 * 29.99884 * 1 2 3 27 27 H 1.08998 * 109.47307 * 149.99818 * 1 2 3 28 28 H 0.97000 * 120.00200 * 3.90037 * 4 2 1 29 29 H 1.08006 * 120.78260 * 0.02562 * 6 5 4 30 30 H 1.07995 * 120.26794 * 179.76761 * 7 6 5 31 31 H 1.07993 * 119.44848 * 180.25344 * 8 7 6 32 32 H 0.96998 * 119.99937 * 0.02562 * 13 11 10 33 33 H 1.08999 * 109.46424 * 299.99896 * 14 13 11 34 34 H 1.08996 * 109.47091 * 59.99121 * 14 13 11 35 35 H 1.08997 * 109.46760 * 299.99443 * 15 14 13 36 36 H 1.09001 * 109.47101 * 59.99735 * 15 14 13 37 37 H 1.09001 * 109.47192 * 299.99956 * 16 15 14 38 38 H 1.08998 * 109.46750 * 60.00029 * 16 15 14 39 39 H 0.97006 * 120.00330 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5712 -1.1686 0.0818 6 6 4.3091 -0.0723 -0.3648 7 6 5.6874 -0.1229 -0.2674 8 6 6.2924 -1.2473 0.2765 9 7 5.5776 -2.2668 0.6955 10 6 4.2514 -2.2683 0.6189 11 6 3.4889 -3.4382 1.1037 12 8 2.2741 -3.4032 1.1306 13 7 4.1407 -4.5435 1.5160 14 6 3.3850 -5.7032 1.9960 15 6 4.3570 -6.8134 2.4003 16 6 3.5678 -8.0244 2.9021 17 6 4.5252 -9.1177 3.3010 18 1 5.5901 -8.9641 3.2064 19 6 4.0417 -10.3141 3.7866 20 7 2.7451 -10.5009 3.9022 21 14 5.2284 -11.6696 4.2803 22 1 6.1199 -11.1776 5.3613 23 1 4.4625 -12.8448 4.7675 24 1 6.0463 -12.0637 3.1051 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6976 -2.0062 -0.0580 29 1 3.8156 0.7939 -0.7804 30 1 6.2880 0.7077 -0.6076 31 1 7.3687 -1.2849 0.3563 32 1 5.1100 -4.5712 1.4949 33 1 2.7851 -5.4140 2.8588 34 1 2.7303 -6.0639 1.2027 35 1 4.9573 -7.1026 1.5377 36 1 5.0114 -6.4523 3.1937 37 1 2.9678 -7.7348 3.7648 38 1 2.9133 -8.3855 2.1089 39 1 2.4049 -11.3425 4.2443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865167370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:54 Heat of formation + Delta-G solvation = -67.961536 kcal Electronic energy + Delta-G solvation = -22088.764819 eV Core-core repulsion = 18609.121482 eV Total energy + Delta-G solvation = -3479.643337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31685 -40.67254 -39.89652 -37.17041 -36.15897 -35.17429 -33.66286 -32.85642 -32.08478 -29.96121 -28.62864 -26.04156 -24.99523 -24.20714 -22.37233 -21.96905 -21.56079 -19.10516 -19.03977 -18.48243 -18.24531 -17.42779 -16.88453 -16.65693 -16.44245 -16.26376 -16.02105 -15.65354 -15.38666 -14.76848 -14.62834 -14.29925 -14.16752 -13.78269 -13.71586 -13.50337 -13.38508 -13.21906 -12.72213 -12.56488 -12.42338 -12.22009 -11.68535 -11.67367 -11.44114 -11.29846 -11.14679 -10.79512 -10.54106 -10.41351 -10.19542 -9.43027 -8.19102 -6.30268 -0.51032 0.10529 1.42114 1.42597 1.44952 1.52749 1.59918 1.94427 2.04236 2.42826 2.78302 3.11363 3.14666 3.59511 3.66378 3.83639 4.04438 4.11421 4.20198 4.21263 4.43686 4.45127 4.54585 4.57349 4.83804 4.93043 4.93366 4.99328 5.09553 5.16031 5.17027 5.34469 5.51929 5.62868 5.71221 5.84551 6.22588 6.24452 6.34152 6.74325 6.86316 6.86666 7.05718 7.39128 8.92713 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.002753 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.257086 B =10166.638340 C =11186.134542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.507 3.493 3 O -0.563 6.563 4 N -0.654 5.654 5 C 0.147 3.853 6 C -0.117 4.117 7 C -0.107 4.107 8 C 0.076 3.924 9 N -0.451 5.451 10 C 0.016 3.984 11 C 0.568 3.432 12 O -0.569 6.569 13 N -0.693 5.693 14 C 0.128 3.872 15 C -0.104 4.104 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.064 0.936 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.428 0.572 29 H 0.165 0.835 30 H 0.183 0.817 31 H 0.201 0.799 32 H 0.418 0.582 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.064 0.936 37 H -0.006 1.006 38 H -0.004 1.004 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 23.401 -11.016 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.442 6.442 4 N -0.304 5.304 5 C 0.045 3.955 6 C -0.145 4.145 7 C -0.127 4.127 8 C -0.086 4.086 9 N -0.163 5.163 10 C -0.123 4.123 11 C 0.355 3.645 12 O -0.450 6.450 13 N -0.343 5.343 14 C 0.005 3.995 15 C -0.142 4.142 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.274 0.726 29 H 0.182 0.818 30 H 0.200 0.800 31 H 0.218 0.782 32 H 0.256 0.744 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.012 0.988 38 H 0.014 0.986 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.785 23.203 -10.551 25.641 hybrid contribution -0.055 -0.727 0.122 0.739 sum 2.730 22.476 -10.430 24.928 Atomic orbital electron populations 1.21945 0.86984 1.06867 1.06551 1.21914 0.92840 0.82018 0.73390 1.90602 1.71229 1.32458 1.49905 1.44175 1.04371 1.12199 1.69668 1.18971 0.85129 0.95495 0.95902 1.22264 0.94944 0.98422 0.98840 1.22789 0.94072 1.00022 0.95848 1.23444 1.01956 0.88173 0.95045 1.67509 1.04641 1.29640 1.14471 1.20659 0.91161 0.95362 1.05094 1.18077 0.86536 0.82598 0.77320 1.90533 1.14080 1.82647 1.57708 1.45846 1.11780 1.13657 1.62985 1.21381 0.94692 0.84705 0.98713 1.21613 0.97700 0.94014 1.00850 1.18920 0.95026 0.92428 0.94783 1.21660 0.93914 0.99830 1.42747 0.91745 1.25987 0.96863 1.01383 0.95682 1.70092 1.13985 1.26159 1.47170 0.85495 0.78634 0.77889 0.79001 1.19148 1.21064 1.19057 0.87209 0.87016 0.87871 0.72634 0.81810 0.79953 0.78200 0.74429 0.92446 0.91992 0.91520 0.91726 0.98761 0.98593 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.31 71.24 0.73 -1.22 16 2 C 0.51 10.58 7.83 87.66 0.69 11.26 16 3 O -0.56 -14.57 14.08 -3.02 -0.04 -14.62 16 4 N -0.65 -15.03 4.82 -302.68 -1.46 -16.49 16 5 C 0.15 3.62 6.47 38.69 0.25 3.87 16 6 C -0.12 -2.38 8.88 22.58 0.20 -2.18 16 7 C -0.11 -1.49 10.10 22.41 0.23 -1.27 16 8 C 0.08 1.19 11.17 84.89 0.95 2.14 16 9 N -0.45 -10.36 9.55 -184.53 -1.76 -12.12 16 10 C 0.02 0.43 6.76 41.96 0.28 0.71 16 11 C 0.57 17.41 7.78 86.78 0.68 18.09 16 12 O -0.57 -19.07 13.81 -3.90 -0.05 -19.12 16 13 N -0.69 -20.88 5.54 -466.00 -2.58 -23.46 16 14 C 0.13 4.50 5.67 86.38 0.49 4.99 16 15 C -0.10 -4.05 5.27 30.60 0.16 -3.89 16 16 C 0.03 1.35 4.97 29.85 0.15 1.50 16 17 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 18 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 21 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.43 9.89 6.07 -92.71 -0.56 9.33 16 29 H 0.16 3.46 5.67 -2.91 -0.02 3.44 16 30 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 31 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.42 11.26 7.81 -92.71 -0.72 10.53 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 37 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -72.53 336.73 1.71 -70.81 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.20 Total: 21.42 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.50 Total: 4.21 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -5.52 Total: -108.50 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.10 Total: -33.74 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.53 1.71 -70.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865167370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.850 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds