Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46705 * 2 1 4 4 C 1.34777 * 119.99962 * 179.97438 * 3 2 1 5 5 O 1.21591 * 119.99865 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00272 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00099 * 180.02562 * 6 4 3 8 8 N 1.40101 * 119.99944 * 359.97438 * 6 4 3 9 9 C 1.34777 * 120.00126 * 255.27564 * 8 6 4 10 10 O 1.21605 * 120.00063 * 359.72735 * 9 8 6 11 11 C 1.47437 * 119.99868 * 179.72289 * 9 8 6 12 12 C 1.39222 * 120.28255 * 355.03552 * 11 9 8 13 13 C 1.38218 * 120.09161 * 180.02562 * 12 11 9 14 14 C 1.38827 * 120.67739 * 359.97438 * 13 12 11 15 15 C 1.37602 * 120.56826 * 0.02562 * 14 13 12 16 16 C 1.40709 * 119.87947 * 359.69028 * 15 14 13 17 17 C 1.40895 * 120.32679 * 180.27760 * 16 15 14 18 18 H 1.07997 * 119.99576 * 141.56284 * 17 16 15 19 19 C 1.40271 * 119.99845 * 321.57279 * 17 16 15 20 20 N 1.30634 * 119.99639 * 174.34405 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 354.33602 * 19 17 16 22 22 H 1.48499 * 109.46572 * 89.39375 * 21 19 17 23 23 H 1.48502 * 109.47137 * 209.39114 * 21 19 17 24 24 H 1.48498 * 109.46901 * 329.39368 * 21 19 17 25 25 H 1.08996 * 109.47237 * 60.00549 * 1 2 3 26 26 H 1.09009 * 109.46757 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47382 * 299.99404 * 1 2 3 28 28 H 1.09000 * 109.47056 * 240.00208 * 2 1 3 29 29 H 1.08997 * 109.46949 * 119.99909 * 2 1 3 30 30 H 0.96997 * 120.00550 * 359.97438 * 3 2 1 31 31 H 1.09006 * 109.46767 * 269.99965 * 7 6 4 32 32 H 1.09001 * 109.47181 * 29.99748 * 7 6 4 33 33 H 1.09000 * 109.47231 * 150.00254 * 7 6 4 34 34 H 0.97001 * 119.99937 * 75.00438 * 8 6 4 35 35 H 1.08002 * 119.95087 * 0.02562 * 12 11 9 36 36 H 1.07996 * 119.66305 * 179.97438 * 13 12 11 37 37 H 1.07999 * 119.71771 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.06047 * 180.02562 * 15 14 13 39 39 H 0.96998 * 119.99806 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1335 0.7035 0.0005 6 7 3.7925 2.8983 0.0010 7 6 5.2329 3.1660 0.0010 8 7 2.8821 3.9631 0.0005 9 6 2.6705 4.6683 -1.1284 10 8 3.2735 4.3834 -2.1453 11 6 1.7078 5.7850 -1.1305 12 6 0.9389 6.0512 -0.0008 13 6 0.0373 7.0988 -0.0073 14 6 -0.1136 7.8964 -1.1334 15 6 0.6322 7.6580 -2.2649 16 6 1.5614 6.6015 -2.2823 17 6 2.3341 6.3526 -3.4338 18 1 3.3676 6.0546 -3.3365 19 6 1.7611 6.4919 -4.7066 20 7 2.5039 6.3696 -5.7742 21 14 -0.0641 6.8522 -4.8749 22 1 -0.2806 8.3213 -4.8752 23 1 -0.5667 6.2775 -6.1486 24 1 -0.7958 6.2441 -3.7347 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 5.5901 3.2320 1.0288 32 1 5.7527 2.3576 -0.5131 33 1 5.4274 4.1077 -0.5123 34 1 2.4011 4.1904 0.8116 35 1 1.0472 5.4383 0.8818 36 1 -0.5559 7.2988 0.8727 37 1 -0.8231 8.7107 -1.1216 38 1 0.5084 8.2840 -3.1363 39 1 2.1077 6.4656 -6.6543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867279191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = -1.866775 kcal Electronic energy + Delta-G solvation = -23495.867947 eV Core-core repulsion = 20019.090693 eV Total energy + Delta-G solvation = -3476.777253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20390 -38.88319 -37.20981 -35.49531 -35.08935 -33.75639 -31.73663 -30.61405 -30.51723 -29.59829 -26.37630 -25.44071 -23.05459 -22.52924 -21.53776 -20.32653 -19.77307 -18.75929 -17.58495 -16.96357 -16.54778 -15.64667 -15.37153 -15.03114 -14.48278 -14.32316 -14.23473 -14.10009 -13.81422 -13.53685 -12.88265 -12.78967 -12.72320 -12.51720 -12.13272 -12.00620 -11.86990 -11.66899 -11.52370 -11.06049 -10.87703 -10.59844 -10.36442 -10.29057 -9.91158 -9.39026 -9.31534 -9.00159 -8.85601 -8.32891 -7.98673 -7.73263 -6.99430 -4.60475 1.91900 2.18744 2.46726 3.00815 3.10319 3.19420 3.29590 3.38000 3.78684 3.86646 4.46223 4.83795 4.99069 5.05698 5.22323 5.29574 5.57182 5.59565 5.68368 5.71801 5.77560 5.88058 5.89417 5.97918 6.04133 6.18865 6.34774 6.56581 6.64266 6.71820 6.95615 7.06659 7.13847 7.22037 7.42032 7.57348 7.84759 7.94365 8.12925 8.35799 8.46710 8.63648 8.69195 9.19937 9.98440 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.005240 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.417547 B = 5342.671571 C = 5538.258918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.742 5.742 4 C 0.716 3.284 5 O -0.589 6.589 6 N -0.422 5.422 7 C 0.113 3.887 8 N -0.547 5.547 9 C 0.558 3.442 10 O -0.502 6.502 11 C -0.245 4.245 12 C -0.042 4.042 13 C -0.249 4.249 14 C -0.064 4.064 15 C -0.221 4.221 16 C 0.118 3.882 17 C -0.393 4.393 18 H 0.115 0.885 19 C 0.077 3.923 20 N -0.790 5.790 21 Si 0.909 3.091 22 H -0.267 1.267 23 H -0.289 1.289 24 H -0.242 1.242 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.400 0.600 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.404 0.596 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 -4.295 10.700 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.399 5.399 4 C 0.417 3.583 5 O -0.465 6.465 6 N -0.248 5.248 7 C -0.030 4.030 8 N -0.302 5.302 9 C 0.351 3.649 10 O -0.375 6.375 11 C -0.252 4.252 12 C -0.061 4.061 13 C -0.268 4.268 14 C -0.083 4.083 15 C -0.240 4.240 16 C 0.113 3.887 17 C -0.420 4.420 18 H 0.132 0.868 19 C -0.143 4.143 20 N -0.414 5.414 21 Si 0.736 3.264 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.165 1.165 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.235 0.765 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.246 0.754 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.930 -5.273 9.630 11.661 hybrid contribution -1.325 0.783 0.184 1.550 sum -5.255 -4.490 9.814 12.004 Atomic orbital electron populations 1.22015 0.94484 1.03016 1.02809 1.21142 0.93904 0.81914 1.02131 1.45137 1.05573 1.09228 1.79922 1.15841 0.82981 0.81942 0.77569 1.90914 1.55206 1.41243 1.59165 1.46131 1.02593 0.97404 1.78721 1.21709 0.76806 1.03253 1.01241 1.45549 1.41910 1.28562 1.14218 1.18880 0.82603 0.81735 0.81672 1.90821 1.48189 1.67422 1.31039 1.19177 1.06615 1.00659 0.98717 1.20772 0.94497 0.95765 0.95036 1.20305 1.05987 1.01697 0.98859 1.20774 0.96673 0.97319 0.93494 1.21197 1.03580 1.00693 0.98496 1.17501 0.89862 0.88911 0.92384 1.19976 1.00678 1.33261 0.88122 0.86779 1.26341 1.01066 0.91586 0.95325 1.69542 1.38657 1.33441 0.99710 0.86367 0.82277 0.79376 0.78422 1.19306 1.21573 1.16527 0.91728 0.90791 0.91997 0.91706 0.91748 0.76515 0.92970 0.89797 0.90513 0.75424 0.88643 0.88288 0.88357 0.87538 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.03 37.16 0.37 -1.12 16 2 C 0.13 1.61 6.39 -4.04 -0.03 1.59 16 3 N -0.74 -10.85 5.52 -65.23 -0.36 -11.21 16 4 C 0.72 12.67 8.40 -86.92 -0.73 11.94 16 5 O -0.59 -11.86 15.92 5.29 0.08 -11.78 16 6 N -0.42 -7.20 3.15 -72.07 -0.23 -7.43 16 7 C 0.11 1.75 10.52 59.85 0.63 2.38 16 8 N -0.55 -9.00 4.78 30.44 0.15 -8.86 16 9 C 0.56 11.79 7.72 -12.51 -0.10 11.70 16 10 O -0.50 -12.90 13.87 5.27 0.07 -12.82 16 11 C -0.25 -5.23 5.92 -104.37 -0.62 -5.85 16 12 C -0.04 -0.73 9.52 -39.22 -0.37 -1.11 16 13 C -0.25 -4.38 10.03 -39.37 -0.39 -4.77 16 14 C -0.06 -1.22 10.01 -39.60 -0.40 -1.61 16 15 C -0.22 -4.85 6.93 -38.88 -0.27 -5.12 16 16 C 0.12 2.85 5.04 -106.54 -0.54 2.31 16 17 C -0.39 -10.54 8.08 -37.81 -0.31 -10.85 16 18 H 0.11 3.40 6.37 -52.49 -0.33 3.07 16 19 C 0.08 2.00 5.51 -17.30 -0.10 1.91 16 20 N -0.79 -21.03 13.92 55.56 0.77 -20.26 16 21 Si 0.91 19.94 24.48 -169.99 -4.16 15.77 16 22 H -0.27 -5.54 6.70 56.52 0.38 -5.16 16 23 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.24 -5.37 6.67 56.52 0.38 -4.99 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.40 5.44 7.51 -40.82 -0.31 5.13 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.34 7.42 -51.93 -0.39 0.96 16 33 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 34 H 0.40 5.31 6.88 -182.60 -1.26 4.05 16 35 H 0.10 1.28 6.43 -52.49 -0.34 0.95 16 36 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.11 2.32 4.88 -52.49 -0.26 2.06 16 39 H 0.29 6.90 8.29 -40.82 -0.34 6.56 16 LS Contribution 327.06 15.07 4.93 4.93 Total: -1.00 -31.51 327.06 -7.45 -38.95 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.86 Total: 11.30 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.84 Total: 1.39 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.33 Total: -47.75 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.16 Total: -24.60 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.16 Total: 15.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.51 -7.45 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867279191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.086 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds