Wall clock time and date at job start Tue Mar 31 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46705 * 2 1 4 4 C 1.34777 * 119.99962 * 179.97438 * 3 2 1 5 5 O 1.21591 * 119.99865 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00272 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00099 * 180.02562 * 6 4 3 8 8 N 1.40101 * 119.99944 * 359.97438 * 6 4 3 9 9 C 1.34777 * 120.00126 * 255.27564 * 8 6 4 10 10 O 1.21605 * 120.00063 * 359.72735 * 9 8 6 11 11 C 1.47437 * 119.99868 * 179.72289 * 9 8 6 12 12 C 1.39222 * 120.28255 * 355.03552 * 11 9 8 13 13 C 1.38218 * 120.09161 * 180.02562 * 12 11 9 14 14 C 1.38827 * 120.67739 * 359.97438 * 13 12 11 15 15 C 1.37602 * 120.56826 * 0.02562 * 14 13 12 16 16 C 1.40709 * 119.87947 * 359.69028 * 15 14 13 17 17 C 1.40895 * 120.32679 * 180.27760 * 16 15 14 18 18 H 1.07997 * 119.99576 * 141.56284 * 17 16 15 19 19 C 1.40271 * 119.99845 * 321.57279 * 17 16 15 20 20 N 1.30634 * 119.99639 * 174.34405 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 354.33602 * 19 17 16 22 22 H 1.48499 * 109.46572 * 89.39375 * 21 19 17 23 23 H 1.48502 * 109.47137 * 209.39114 * 21 19 17 24 24 H 1.48498 * 109.46901 * 329.39368 * 21 19 17 25 25 H 1.08996 * 109.47237 * 60.00549 * 1 2 3 26 26 H 1.09009 * 109.46757 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47382 * 299.99404 * 1 2 3 28 28 H 1.09000 * 109.47056 * 240.00208 * 2 1 3 29 29 H 1.08997 * 109.46949 * 119.99909 * 2 1 3 30 30 H 0.96997 * 120.00550 * 359.97438 * 3 2 1 31 31 H 1.09006 * 109.46767 * 269.99965 * 7 6 4 32 32 H 1.09001 * 109.47181 * 29.99748 * 7 6 4 33 33 H 1.09000 * 109.47231 * 150.00254 * 7 6 4 34 34 H 0.97001 * 119.99937 * 75.00438 * 8 6 4 35 35 H 1.08002 * 119.95087 * 0.02562 * 12 11 9 36 36 H 1.07996 * 119.66305 * 179.97438 * 13 12 11 37 37 H 1.07999 * 119.71771 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.06047 * 180.02562 * 15 14 13 39 39 H 0.96998 * 119.99806 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1335 0.7035 0.0005 6 7 3.7925 2.8983 0.0010 7 6 5.2329 3.1660 0.0010 8 7 2.8821 3.9631 0.0005 9 6 2.6705 4.6683 -1.1284 10 8 3.2735 4.3834 -2.1453 11 6 1.7078 5.7850 -1.1305 12 6 0.9389 6.0512 -0.0008 13 6 0.0373 7.0988 -0.0073 14 6 -0.1136 7.8964 -1.1334 15 6 0.6322 7.6580 -2.2649 16 6 1.5614 6.6015 -2.2823 17 6 2.3341 6.3526 -3.4338 18 1 3.3676 6.0546 -3.3365 19 6 1.7611 6.4919 -4.7066 20 7 2.5039 6.3696 -5.7742 21 14 -0.0641 6.8522 -4.8749 22 1 -0.2806 8.3213 -4.8752 23 1 -0.5667 6.2775 -6.1486 24 1 -0.7958 6.2441 -3.7347 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 5.5901 3.2320 1.0288 32 1 5.7527 2.3576 -0.5131 33 1 5.4274 4.1077 -0.5123 34 1 2.4011 4.1904 0.8116 35 1 1.0472 5.4383 0.8818 36 1 -0.5559 7.2988 0.8727 37 1 -0.8231 8.7107 -1.1216 38 1 0.5084 8.2840 -3.1363 39 1 2.1077 6.4656 -6.6543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867279191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:23 Heat of formation + Delta-G solvation = -24.906873 kcal Electronic energy + Delta-G solvation = -23496.867041 eV Core-core repulsion = 20019.090693 eV Total energy + Delta-G solvation = -3477.776347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65701 -40.47951 -38.82227 -36.92249 -36.42406 -35.51781 -33.31688 -32.31151 -31.53605 -31.12336 -27.71319 -27.10729 -24.52810 -23.68695 -23.10442 -21.80838 -21.30711 -20.17795 -19.31728 -18.54734 -17.86364 -17.23503 -16.75126 -16.44770 -15.93499 -15.80346 -15.72392 -15.43791 -15.29999 -15.14892 -14.55665 -14.36906 -14.01942 -13.82341 -13.50292 -13.28884 -13.19866 -12.72059 -12.69791 -12.55989 -12.42158 -12.21627 -12.04535 -11.84716 -11.60866 -11.09747 -10.87749 -10.54250 -10.31583 -9.74533 -9.54583 -9.40861 -8.81283 -6.49795 0.29157 0.79527 0.84617 1.24872 1.37743 1.46835 1.91034 2.09415 2.12245 2.16381 2.70383 3.49731 3.51274 4.06624 4.16846 4.20764 4.23134 4.34754 4.46252 4.49496 4.50868 4.71063 4.75167 4.83200 4.88340 4.99596 5.03803 5.22637 5.29593 5.32354 5.42084 5.45645 5.66509 5.81789 5.85111 5.94742 6.23716 6.40303 6.49465 6.70563 6.77792 6.80416 7.26493 7.63368 8.24215 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.005240 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.417547 B = 5342.671571 C = 5538.258918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 N -0.733 5.733 4 C 0.707 3.293 5 O -0.617 6.617 6 N -0.427 5.427 7 C 0.111 3.889 8 N -0.521 5.521 9 C 0.559 3.441 10 O -0.556 6.556 11 C -0.253 4.253 12 C -0.036 4.036 13 C -0.221 4.221 14 C -0.058 4.058 15 C -0.243 4.243 16 C 0.104 3.896 17 C -0.443 4.443 18 H 0.060 0.940 19 C 0.032 3.968 20 N -0.855 5.855 21 Si 0.969 3.031 22 H -0.247 1.247 23 H -0.286 1.286 24 H -0.242 1.242 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.406 0.594 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.427 0.573 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 -3.717 14.984 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.004 3.996 3 N -0.389 5.389 4 C 0.408 3.592 5 O -0.496 6.496 6 N -0.254 5.254 7 C -0.031 4.031 8 N -0.276 5.276 9 C 0.352 3.648 10 O -0.432 6.432 11 C -0.260 4.260 12 C -0.054 4.054 13 C -0.240 4.240 14 C -0.077 4.077 15 C -0.262 4.262 16 C 0.100 3.900 17 C -0.472 4.472 18 H 0.078 0.922 19 C -0.181 4.181 20 N -0.483 5.483 21 Si 0.792 3.208 22 H -0.172 1.172 23 H -0.213 1.213 24 H -0.165 1.165 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.242 0.758 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.273 0.727 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.120 0.880 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.681 -4.682 13.991 16.634 hybrid contribution -0.218 0.566 -0.723 0.944 sum -7.899 -4.116 13.268 15.980 Atomic orbital electron populations 1.21975 0.91680 1.04550 1.03094 1.21358 0.96146 0.80457 1.01659 1.45227 1.04475 1.10564 1.78675 1.16081 0.83839 0.81673 0.77642 1.90889 1.56190 1.41991 1.60527 1.46287 1.03095 0.97396 1.78652 1.21781 0.76224 1.02027 1.03076 1.45060 1.41372 1.27497 1.13712 1.19053 0.81981 0.81949 0.81848 1.90836 1.50075 1.68765 1.33531 1.19484 1.06889 1.00233 0.99363 1.21265 0.92803 0.96264 0.95075 1.20995 1.04136 0.99325 0.99537 1.21300 0.95931 0.98050 0.92392 1.21276 1.04369 1.00462 1.00092 1.17754 0.90179 0.89711 0.92351 1.19711 0.99436 1.37717 0.90321 0.92190 1.27109 1.05126 0.91274 0.94627 1.69624 1.40415 1.37984 1.00230 0.85479 0.77052 0.80216 0.78102 1.17173 1.21349 1.16545 0.92573 0.88701 0.90423 0.93420 0.91043 0.75802 0.89457 0.90865 0.91951 0.72750 0.83493 0.83357 0.84488 0.88028 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 10.03 71.98 0.72 -1.65 16 2 C 0.13 2.89 6.39 86.38 0.55 3.44 16 3 N -0.73 -20.29 5.52 -478.53 -2.64 -22.93 16 4 C 0.71 24.57 8.40 179.06 1.50 26.07 16 5 O -0.62 -24.89 15.92 -4.00 -0.06 -24.96 16 6 N -0.43 -14.29 3.15 -500.18 -1.58 -15.87 16 7 C 0.11 3.47 10.52 127.77 1.34 4.81 16 8 N -0.52 -16.17 4.78 -175.88 -0.84 -17.01 16 9 C 0.56 23.65 7.72 86.67 0.67 24.32 16 10 O -0.56 -30.30 13.87 -4.05 -0.06 -30.36 16 11 C -0.25 -10.40 5.92 -19.70 -0.12 -10.52 16 12 C -0.04 -1.05 9.52 22.50 0.21 -0.84 16 13 C -0.22 -6.15 10.03 22.41 0.22 -5.92 16 14 C -0.06 -1.90 10.01 22.26 0.22 -1.68 16 15 C -0.24 -10.19 6.93 22.72 0.16 -10.04 16 16 C 0.10 5.05 5.04 -21.11 -0.11 4.94 16 17 C -0.44 -25.53 8.08 23.42 0.19 -25.34 16 18 H 0.06 3.99 6.37 -2.91 -0.02 3.97 16 19 C 0.03 1.75 5.51 85.37 0.47 2.22 16 20 N -0.86 -49.72 13.92 21.88 0.30 -49.41 16 21 Si 0.97 42.23 24.48 68.60 1.68 43.91 16 22 H -0.25 -9.76 6.70 99.48 0.67 -9.10 16 23 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.24 -10.30 6.67 99.48 0.66 -9.64 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.41 10.01 7.51 -92.71 -0.70 9.31 16 31 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.07 2.43 7.42 -2.39 -0.02 2.41 16 33 H 0.06 2.11 8.09 -2.39 -0.02 2.09 16 34 H 0.43 9.42 6.88 -213.32 -1.47 7.95 16 35 H 0.15 2.82 6.43 -2.91 -0.02 2.80 16 36 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 37 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.10 4.31 4.88 -2.91 -0.01 4.30 16 39 H 0.29 15.22 8.29 -92.71 -0.77 14.45 16 Total: -1.00 -77.29 327.06 1.70 -75.59 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -1.15 Total: 31.21 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.05 Total: 9.82 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.75 Total: -105.21 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -0.12 Total: -55.32 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.68 Total: 43.91 kcal Total: -77.29 1.70 -75.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867279191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.678 kcal (2) G-P(sol) polarization free energy of solvation -77.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds