Wall clock time and date at job start Tue Mar 31 2020 06:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99972 * 2 1 4 4 H 1.08993 * 110.64272 * 328.31701 * 3 2 1 5 5 C 1.55160 * 110.71922 * 204.97386 * 3 2 1 6 6 C 1.55129 * 101.48500 * 205.96963 * 5 3 2 7 7 N 1.47428 * 104.71913 * 37.30220 * 6 5 3 8 8 C 1.34779 * 125.64579 * 155.81895 * 7 6 5 9 9 O 1.21584 * 119.99791 * 179.68480 * 8 7 6 10 10 N 1.34773 * 120.00126 * 359.68278 * 8 7 6 11 11 C 1.39455 * 119.99994 * 175.61272 * 10 8 7 12 12 C 1.38645 * 119.65048 * 186.28709 * 11 10 8 13 13 C 1.40816 * 118.67652 * 179.72372 * 12 11 10 14 14 C 1.41553 * 120.99623 * 180.29964 * 13 12 11 15 15 H 1.08002 * 119.99515 * 158.71972 * 14 13 12 16 16 C 1.40027 * 120.00276 * 338.71939 * 14 13 12 17 17 N 1.30744 * 119.99645 * 347.93454 * 16 14 13 18 18 Si 1.86797 * 120.00153 * 167.92544 * 16 14 13 19 19 H 1.48505 * 109.46787 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46830 * 120.00026 * 18 16 14 21 21 H 1.48496 * 109.47259 * 240.00435 * 18 16 14 22 22 C 1.41159 * 118.00835 * 0.28211 * 13 12 11 23 23 C 1.36595 * 119.12735 * 359.97438 * 22 13 12 24 24 N 1.32069 * 121.25460 * 0.02562 * 23 22 13 25 25 C 1.47021 * 108.70270 * 335.54668 * 7 6 5 26 26 H 1.08998 * 109.46718 * 59.99760 * 1 2 3 27 27 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47193 * 299.99903 * 1 2 3 29 29 H 1.08992 * 111.00686 * 324.21486 * 5 3 2 30 30 H 1.08997 * 110.99688 * 88.06438 * 5 3 2 31 31 H 1.08996 * 110.50055 * 278.45471 * 6 5 3 32 32 H 1.09001 * 110.34200 * 156.05975 * 6 5 3 33 33 H 0.97000 * 120.00290 * 355.62100 * 10 8 7 34 34 H 1.08001 * 120.66261 * 0.02562 * 12 11 10 35 35 H 0.97006 * 119.99671 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.43908 * 180.02562 * 22 13 12 37 37 H 1.07997 * 119.37162 * 180.02562 * 23 22 13 38 38 H 1.08996 * 109.88004 * 120.71147 * 25 7 6 39 39 H 1.09003 * 109.88400 * 241.87251 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3737 2.0095 -0.5357 5 6 3.4354 1.2719 -0.6127 6 6 4.0953 2.4969 0.0729 7 7 3.5563 2.4937 1.4451 8 6 4.1459 3.0498 2.5220 9 8 3.6050 2.9912 3.6092 10 7 5.3352 3.6707 2.3936 11 6 5.9019 4.3249 3.4870 12 6 7.0581 5.0708 3.3163 13 6 7.6095 5.7277 4.4331 14 6 8.7849 6.5073 4.3134 15 1 9.0080 7.2646 5.0504 16 6 9.6584 6.2967 3.2394 17 7 9.5221 5.2383 2.4839 18 14 11.0181 7.5278 2.8860 19 1 10.9586 8.6297 3.8798 20 1 12.3360 6.8496 2.9778 21 1 10.8408 8.0826 1.5200 22 6 6.9547 5.5859 5.6756 23 6 5.8224 4.8252 5.7475 24 7 5.3327 4.2227 4.6791 25 6 2.2658 1.7892 1.4430 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9515 0.3483 -0.3510 30 1 3.3988 1.4042 -1.6940 31 1 3.8185 3.4172 -0.4413 32 1 5.1792 2.3828 0.0909 33 1 5.7970 3.6626 1.5406 34 1 7.5238 5.1504 2.3451 35 1 10.1275 5.0922 1.7401 36 1 7.3434 6.0730 6.5577 37 1 5.3181 4.7143 6.6960 38 1 2.3089 0.9348 2.1183 39 1 1.4718 2.4690 1.7521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871726525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:08 Heat of formation + Delta-G solvation = -21.803151 kcal Electronic energy + Delta-G solvation = -22754.218731 eV Core-core repulsion = 19276.576971 eV Total energy + Delta-G solvation = -3477.641760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19103 -38.87496 -37.80470 -36.14402 -34.30987 -33.73002 -31.06713 -30.42418 -29.07856 -28.15722 -26.68855 -25.99677 -23.58675 -21.88103 -21.67171 -20.96199 -19.44190 -18.06014 -17.62786 -17.26243 -16.02371 -15.52507 -15.33050 -15.26776 -15.09062 -14.42660 -14.19211 -14.14623 -13.77895 -13.31508 -12.95334 -12.80503 -12.61662 -12.57852 -12.27306 -12.02546 -11.90635 -11.59395 -11.43696 -11.15655 -10.91773 -10.88360 -10.26101 -10.08534 -9.93814 -9.76141 -9.55852 -9.38576 -8.44761 -7.97808 -7.70008 -6.99883 -6.73223 -4.62284 2.70183 2.77752 2.81376 3.01161 3.06707 3.26130 3.52005 3.83904 3.86263 4.20714 4.33929 4.48630 4.70726 4.75855 5.00145 5.05584 5.11673 5.21174 5.41500 5.44031 5.58039 5.65540 5.72322 5.77566 5.85951 5.95591 6.34598 6.62330 6.66648 6.83763 6.89480 6.95867 7.18285 7.31590 7.46996 7.51842 7.88901 8.10425 8.36725 8.48980 8.74714 8.77093 9.18087 9.76716 10.06809 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.003463 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.459524 B = 8083.441223 C = 9050.899061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.375 6.375 3 C 0.076 3.924 4 H 0.079 0.921 5 C -0.125 4.125 6 C 0.098 3.902 7 N -0.641 5.641 8 C 0.711 3.289 9 O -0.529 6.529 10 N -0.664 5.664 11 C 0.353 3.647 12 C -0.249 4.249 13 C 0.140 3.860 14 C -0.448 4.448 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.791 5.791 18 Si 0.915 3.085 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.272 1.272 22 C -0.285 4.285 23 C 0.120 3.880 24 N -0.555 5.555 25 C 0.109 3.891 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.404 0.596 34 H 0.139 0.861 35 H 0.280 0.720 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.816 -5.709 -10.969 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.017 3.983 4 H 0.097 0.903 5 C -0.163 4.163 6 C -0.025 4.025 7 N -0.384 5.384 8 C 0.412 3.588 9 O -0.399 6.399 10 N -0.312 5.312 11 C 0.127 3.873 12 C -0.275 4.275 13 C 0.131 3.869 14 C -0.480 4.480 15 H 0.100 0.900 16 C -0.144 4.144 17 N -0.417 5.417 18 Si 0.739 3.261 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.309 4.309 23 C -0.034 4.034 24 N -0.274 5.274 25 C -0.016 4.016 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.239 0.761 34 H 0.156 0.844 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.792 -6.539 -10.190 16.219 hybrid contribution 1.490 1.173 -0.777 2.049 sum -9.302 -5.366 -10.967 15.349 Atomic orbital electron populations 1.22837 0.80821 1.02947 1.00228 1.87952 1.19914 1.26675 1.94796 1.23171 0.95177 0.85063 0.94891 0.90276 1.22872 0.94066 0.99155 1.00208 1.22316 0.99347 0.97945 0.82930 1.47538 1.22749 1.60893 1.07244 1.15581 0.81305 0.78969 0.82934 1.91018 1.63986 1.61355 1.23564 1.42552 1.20026 1.55404 1.13253 1.18000 0.90655 0.92597 0.86007 1.21761 0.97110 1.06935 1.01670 1.17588 0.91008 0.88708 0.89593 1.19647 1.03621 1.16943 1.07749 0.90003 1.25984 0.98736 0.94997 0.94683 1.69753 1.34415 1.23144 1.14395 0.86154 0.79811 0.80911 0.79242 1.18327 1.19872 1.19670 1.21648 1.01853 1.09476 0.97913 1.21463 0.93272 0.93628 0.95050 1.67195 1.34786 1.27694 0.97738 1.22130 0.85320 0.96899 0.97204 0.93900 0.89485 0.93666 0.89308 0.89366 0.91230 0.90282 0.76119 0.84356 0.90884 0.88065 0.86063 0.90699 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.88 101.05 1.10 1.31 16 2 O -0.38 -3.96 10.43 -35.23 -0.37 -4.32 16 3 C 0.08 0.75 3.40 -24.90 -0.08 0.67 16 4 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 5 C -0.12 -1.14 6.82 -24.46 -0.17 -1.31 16 6 C 0.10 1.08 6.63 -2.41 -0.02 1.06 16 7 N -0.64 -9.97 3.32 -176.10 -0.59 -10.55 16 8 C 0.71 14.83 8.45 -86.92 -0.73 14.09 16 9 O -0.53 -13.34 14.93 5.29 0.08 -13.26 16 10 N -0.66 -13.90 5.35 -15.86 -0.08 -13.99 16 11 C 0.35 8.90 7.42 -154.68 -1.15 7.75 16 12 C -0.25 -6.42 8.67 -38.46 -0.33 -6.75 16 13 C 0.14 3.71 5.65 -106.55 -0.60 3.11 16 14 C -0.45 -11.55 9.15 -37.65 -0.34 -11.89 16 15 H 0.08 2.02 7.88 -52.49 -0.41 1.61 16 16 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 17 N -0.79 -19.28 10.51 55.55 0.58 -18.70 16 18 Si 0.91 17.85 29.58 -169.99 -5.03 12.82 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 C -0.28 -7.12 9.85 -39.07 -0.38 -7.51 16 23 C 0.12 2.97 11.10 -18.04 -0.20 2.77 16 24 N -0.55 -14.79 7.86 -12.76 -0.10 -14.89 16 25 C 0.11 1.46 6.64 -3.07 -0.02 1.44 16 26 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.83 7.22 -51.93 -0.38 0.45 16 33 H 0.40 7.04 7.15 -40.82 -0.29 6.75 16 34 H 0.14 3.52 5.82 -52.49 -0.31 3.22 16 35 H 0.28 6.13 8.29 -40.82 -0.34 5.80 16 36 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 38 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -33.06 328.63 -8.73 -41.79 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.15 Total: 9.73 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -3.03 Total: 6.42 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.19 Total: -58.13 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.29 Total: -17.58 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.06 -8.73 -41.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.988 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds