Wall clock time and date at job start Tue Mar 31 2020 06:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99972 * 2 1 4 4 H 1.08993 * 110.64272 * 328.31701 * 3 2 1 5 5 C 1.55160 * 110.71922 * 204.97386 * 3 2 1 6 6 C 1.55129 * 101.48500 * 205.96963 * 5 3 2 7 7 N 1.47428 * 104.71913 * 37.30220 * 6 5 3 8 8 C 1.34779 * 125.64579 * 155.81895 * 7 6 5 9 9 O 1.21584 * 119.99791 * 179.68480 * 8 7 6 10 10 N 1.34773 * 120.00126 * 359.68278 * 8 7 6 11 11 C 1.39455 * 119.99994 * 175.61272 * 10 8 7 12 12 C 1.38645 * 119.65048 * 186.28709 * 11 10 8 13 13 C 1.40816 * 118.67652 * 179.72372 * 12 11 10 14 14 C 1.41553 * 120.99623 * 180.29964 * 13 12 11 15 15 H 1.08002 * 119.99515 * 158.71972 * 14 13 12 16 16 C 1.40027 * 120.00276 * 338.71939 * 14 13 12 17 17 N 1.30744 * 119.99645 * 347.93454 * 16 14 13 18 18 Si 1.86797 * 120.00153 * 167.92544 * 16 14 13 19 19 H 1.48505 * 109.46787 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46830 * 120.00026 * 18 16 14 21 21 H 1.48496 * 109.47259 * 240.00435 * 18 16 14 22 22 C 1.41159 * 118.00835 * 0.28211 * 13 12 11 23 23 C 1.36595 * 119.12735 * 359.97438 * 22 13 12 24 24 N 1.32069 * 121.25460 * 0.02562 * 23 22 13 25 25 C 1.47021 * 108.70270 * 335.54668 * 7 6 5 26 26 H 1.08998 * 109.46718 * 59.99760 * 1 2 3 27 27 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47193 * 299.99903 * 1 2 3 29 29 H 1.08992 * 111.00686 * 324.21486 * 5 3 2 30 30 H 1.08997 * 110.99688 * 88.06438 * 5 3 2 31 31 H 1.08996 * 110.50055 * 278.45471 * 6 5 3 32 32 H 1.09001 * 110.34200 * 156.05975 * 6 5 3 33 33 H 0.97000 * 120.00290 * 355.62100 * 10 8 7 34 34 H 1.08001 * 120.66261 * 0.02562 * 12 11 10 35 35 H 0.97006 * 119.99671 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.43908 * 180.02562 * 22 13 12 37 37 H 1.07997 * 119.37162 * 180.02562 * 23 22 13 38 38 H 1.08996 * 109.88004 * 120.71147 * 25 7 6 39 39 H 1.09003 * 109.88400 * 241.87251 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3737 2.0095 -0.5357 5 6 3.4354 1.2719 -0.6127 6 6 4.0953 2.4969 0.0729 7 7 3.5563 2.4937 1.4451 8 6 4.1459 3.0498 2.5220 9 8 3.6050 2.9912 3.6092 10 7 5.3352 3.6707 2.3936 11 6 5.9019 4.3249 3.4870 12 6 7.0581 5.0708 3.3163 13 6 7.6095 5.7277 4.4331 14 6 8.7849 6.5073 4.3134 15 1 9.0080 7.2646 5.0504 16 6 9.6584 6.2967 3.2394 17 7 9.5221 5.2383 2.4839 18 14 11.0181 7.5278 2.8860 19 1 10.9586 8.6297 3.8798 20 1 12.3360 6.8496 2.9778 21 1 10.8408 8.0826 1.5200 22 6 6.9547 5.5859 5.6756 23 6 5.8224 4.8252 5.7475 24 7 5.3327 4.2227 4.6791 25 6 2.2658 1.7892 1.4430 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9515 0.3483 -0.3510 30 1 3.3988 1.4042 -1.6940 31 1 3.8185 3.4172 -0.4413 32 1 5.1792 2.3828 0.0909 33 1 5.7970 3.6626 1.5406 34 1 7.5238 5.1504 2.3451 35 1 10.1275 5.0922 1.7401 36 1 7.3434 6.0730 6.5577 37 1 5.3181 4.7143 6.6960 38 1 2.3089 0.9348 2.1183 39 1 1.4718 2.4690 1.7521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871726525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:07 Heat of formation + Delta-G solvation = -43.475124 kcal Electronic energy + Delta-G solvation = -22755.158498 eV Core-core repulsion = 19276.576971 eV Total energy + Delta-G solvation = -3478.581527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63742 -40.28880 -39.23634 -37.26022 -36.14530 -35.53912 -32.51441 -32.07900 -30.44133 -29.47703 -27.93729 -27.41223 -24.81403 -23.78559 -23.07117 -22.08784 -21.01330 -19.55867 -19.33827 -18.16089 -17.64558 -17.08606 -16.72315 -16.33657 -16.23492 -16.01627 -15.73679 -15.54973 -15.15966 -14.68058 -14.61653 -14.33963 -14.05574 -13.86164 -13.48245 -13.13797 -12.98889 -12.85063 -12.69682 -12.62210 -12.30826 -12.04390 -11.86391 -11.67928 -11.55576 -11.31905 -11.19777 -10.68666 -9.95575 -9.75150 -9.62554 -8.85314 -8.57262 -6.57822 0.82599 1.00959 1.40446 1.42864 1.56911 1.58501 2.18699 2.21526 2.71597 2.84470 2.95892 3.46202 3.51999 3.77380 4.01150 4.12072 4.23040 4.30829 4.48420 4.55807 4.56922 4.67243 4.70850 4.75477 4.84244 4.89439 4.91382 4.96118 5.09024 5.11058 5.25554 5.29589 5.50594 5.64291 5.83364 5.97870 6.19837 6.23308 6.55893 6.77888 6.82497 6.86308 7.52252 7.89098 8.27349 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.003463 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.459524 B = 8083.441223 C = 9050.899061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.086 3.914 4 H 0.108 0.892 5 C -0.115 4.115 6 C 0.089 3.911 7 N -0.636 5.636 8 C 0.705 3.295 9 O -0.581 6.581 10 N -0.656 5.656 11 C 0.349 3.651 12 C -0.264 4.264 13 C 0.110 3.890 14 C -0.475 4.475 15 H 0.084 0.916 16 C 0.036 3.964 17 N -0.811 5.811 18 Si 0.992 3.008 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.261 1.261 22 C -0.298 4.298 23 C 0.113 3.887 24 N -0.585 5.585 25 C 0.103 3.897 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.418 0.582 34 H 0.138 0.862 35 H 0.293 0.707 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.051 0.949 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 -5.374 -13.426 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.312 6.312 3 C 0.028 3.972 4 H 0.125 0.875 5 C -0.153 4.153 6 C -0.032 4.032 7 N -0.377 5.377 8 C 0.407 3.593 9 O -0.456 6.456 10 N -0.306 5.306 11 C 0.122 3.878 12 C -0.290 4.290 13 C 0.102 3.898 14 C -0.506 4.506 15 H 0.102 0.898 16 C -0.181 4.181 17 N -0.436 5.436 18 Si 0.812 3.188 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.322 4.322 23 C -0.040 4.040 24 N -0.305 5.305 25 C -0.021 4.021 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.256 0.744 34 H 0.155 0.845 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.070 0.930 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.398 -6.244 -12.723 17.577 hybrid contribution 1.322 0.992 -0.050 1.654 sum -9.076 -5.252 -12.772 16.525 Atomic orbital electron populations 1.23042 0.79291 1.04083 1.01080 1.87935 1.21693 1.26907 1.94683 1.23171 0.96313 0.85533 0.92228 0.87466 1.22882 0.92868 0.97546 1.01956 1.22700 0.99893 1.00201 0.80425 1.47501 1.23174 1.59195 1.07807 1.15759 0.81042 0.78984 0.83559 1.90967 1.65151 1.63381 1.26130 1.42406 1.20296 1.54950 1.12916 1.18220 0.90549 0.92413 0.86626 1.21747 0.97694 1.08054 1.01544 1.18034 0.91913 0.89412 0.90463 1.19936 1.04132 1.17375 1.09151 0.89767 1.26873 1.00850 0.96648 0.93741 1.69772 1.35296 1.24081 1.14488 0.85004 0.76423 0.78064 0.79297 1.18272 1.19057 1.18505 1.21835 1.02141 1.10014 0.98179 1.21894 0.93317 0.93064 0.95762 1.67308 1.35734 1.28856 0.98621 1.22342 0.84184 0.95827 0.99779 0.91880 0.88367 0.93929 0.90323 0.85759 0.88868 0.89800 0.74398 0.84458 0.89627 0.86532 0.83651 0.93035 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.88 113.37 1.23 1.50 16 2 O -0.39 -7.55 10.43 -148.98 -1.55 -9.10 16 3 C 0.09 1.52 3.40 31.78 0.11 1.62 16 4 H 0.11 1.33 7.88 -2.39 -0.02 1.31 16 5 C -0.11 -1.75 6.82 32.06 0.22 -1.53 16 6 C 0.09 1.77 6.63 86.93 0.58 2.35 16 7 N -0.64 -19.55 3.32 -829.32 -2.76 -22.31 16 8 C 0.71 30.03 8.45 179.05 1.51 31.54 16 9 O -0.58 -30.44 14.93 -3.98 -0.06 -30.50 16 10 N -0.66 -27.92 5.35 -322.37 -1.72 -29.64 16 11 C 0.35 18.02 7.42 132.76 0.98 19.01 16 12 C -0.26 -13.95 8.67 23.00 0.20 -13.75 16 13 C 0.11 5.99 5.65 -21.11 -0.12 5.87 16 14 C -0.48 -24.65 9.15 23.52 0.22 -24.43 16 15 H 0.08 4.18 7.88 -2.91 -0.02 4.15 16 16 C 0.04 1.68 5.31 85.29 0.45 2.13 16 17 N -0.81 -39.10 10.51 21.84 0.23 -38.88 16 18 Si 0.99 35.48 29.58 68.60 2.03 37.51 16 19 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 20 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 21 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 22 C -0.30 -15.20 9.85 22.60 0.22 -14.97 16 23 C 0.11 5.71 11.10 84.27 0.94 6.65 16 24 N -0.59 -32.07 7.86 -194.27 -1.53 -33.60 16 25 C 0.10 2.73 6.64 86.73 0.58 3.31 16 26 H 0.06 0.56 8.11 -2.39 -0.02 0.54 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.60 7.22 -2.39 -0.02 1.58 16 33 H 0.42 14.59 7.15 -92.71 -0.66 13.93 16 34 H 0.14 7.12 5.82 -2.91 -0.02 7.10 16 35 H 0.29 12.46 8.29 -92.70 -0.77 11.69 16 36 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 37 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 38 H 0.05 1.60 8.06 -2.39 -0.02 1.58 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -73.73 328.63 2.16 -71.56 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.41 Total: 35.68 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 7.12 Total: 19.28 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.78 Total: -124.43 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.61 Total: -39.61 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -73.73 2.16 -71.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.089 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds