Wall clock time and date at job start Tue Mar 31 2020 06:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00160 * 2 1 4 4 C 1.53004 * 109.47264 * 180.02562 * 3 2 1 5 5 N 1.46499 * 115.55057 * 300.83369 * 4 3 2 6 6 C 1.34773 * 119.99797 * 300.15762 * 5 4 3 7 7 O 1.21583 * 120.00278 * 4.32033 * 6 5 4 8 8 N 1.34775 * 119.99851 * 184.32158 * 6 5 4 9 9 C 1.39459 * 120.00160 * 185.28351 * 8 6 5 10 10 C 1.38645 * 119.64981 * 174.67560 * 9 8 6 11 11 C 1.40823 * 118.67095 * 180.02562 * 10 9 8 12 12 C 1.41548 * 120.99396 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00113 * 127.12884 * 12 11 10 14 14 C 1.40032 * 119.99765 * 307.12502 * 12 11 10 15 15 N 1.30743 * 120.00032 * 157.27136 * 14 12 11 16 16 Si 1.86804 * 120.00170 * 337.27781 * 14 12 11 17 17 H 1.48498 * 109.47223 * 84.13203 * 16 14 12 18 18 H 1.48501 * 109.47140 * 204.13160 * 16 14 12 19 19 H 1.48498 * 109.46894 * 324.12914 * 16 14 12 20 20 C 1.41157 * 118.00819 * 359.97438 * 11 10 9 21 21 C 1.36589 * 119.12733 * 0.02562 * 20 11 10 22 22 N 1.32065 * 121.25969 * 0.02562 * 21 20 11 23 23 C 1.53003 * 117.49631 * 86.50547 * 4 3 2 24 24 C 1.53001 * 117.49601 * 155.15914 * 4 3 2 25 25 H 1.09002 * 109.46735 * 299.99283 * 1 2 3 26 26 H 1.08991 * 109.47078 * 59.99409 * 1 2 3 27 27 H 1.09003 * 109.46702 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46983 * 60.00592 * 3 2 1 29 29 H 1.09000 * 109.47257 * 300.00662 * 3 2 1 30 30 H 0.96997 * 119.99673 * 120.16098 * 5 4 3 31 31 H 0.97004 * 119.99879 * 5.27113 * 8 6 5 32 32 H 1.07998 * 120.66233 * 0.03812 * 10 9 8 33 33 H 0.96997 * 120.00226 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.43575 * 180.02562 * 20 11 10 35 35 H 1.08004 * 119.37031 * 179.97438 * 21 20 11 36 36 H 1.09002 * 117.49752 * 215.00510 * 23 4 3 37 37 H 1.08999 * 117.49806 * 0.02562 * 23 4 3 38 38 H 1.08998 * 117.50197 * 359.97438 * 24 4 3 39 39 H 1.09005 * 117.49809 * 144.97394 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1124 0.4592 1.1339 6 6 3.9088 0.9018 2.3905 7 8 3.1825 1.8565 2.5886 8 7 4.5104 0.2861 3.4275 9 6 4.2149 0.6724 4.7346 10 6 4.7519 -0.0374 5.7976 11 6 4.4395 0.3702 7.1088 12 6 4.9602 -0.3192 8.2300 13 1 5.4820 0.2245 9.0037 14 6 4.7988 -1.7061 8.3361 15 7 5.6143 -2.4040 9.0827 16 14 3.4185 -2.5593 7.4106 17 1 3.8554 -2.8412 6.0197 18 1 3.0806 -3.8350 8.0915 19 1 2.2222 -1.6799 7.3851 20 6 3.5915 1.4869 7.2715 21 6 3.1102 2.1234 6.1629 22 7 3.4231 1.7132 4.9472 23 6 4.2326 1.0466 -1.3556 24 6 4.3367 2.3567 -0.5709 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 4.6408 -0.3396 0.9806 31 1 5.1489 -0.4258 3.2648 32 1 5.3971 -0.8858 5.6235 33 1 5.5027 -3.3647 9.1559 34 1 3.3267 1.8335 8.2595 35 1 2.4607 2.9780 6.2829 36 1 5.1204 0.4160 -1.4029 37 1 3.6047 1.0423 -2.2465 38 1 3.7772 3.2137 -0.9460 39 1 5.2929 2.5884 -0.1016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871726740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:47 Heat of formation + Delta-G solvation = 2.994009 kcal Electronic energy + Delta-G solvation = -22988.015732 eV Core-core repulsion = 19511.449258 eV Total energy + Delta-G solvation = -3476.566474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23707 -38.93284 -37.76884 -36.69195 -34.26826 -33.64841 -32.52035 -31.16550 -28.82387 -28.14199 -25.95319 -25.58510 -22.91250 -22.48293 -22.17920 -20.42619 -19.72490 -18.19332 -17.74424 -16.88414 -16.18733 -15.93834 -15.72120 -15.13677 -14.85392 -14.72506 -14.49831 -14.34048 -14.08855 -13.71099 -13.09652 -12.97655 -12.66832 -12.47423 -12.29371 -11.76118 -11.59929 -11.53893 -11.13898 -11.03169 -10.77594 -10.66677 -10.40476 -10.13640 -9.95964 -9.83807 -9.44303 -9.13334 -8.86836 -8.04759 -7.95048 -7.29309 -6.84780 -4.58061 2.35839 2.60358 2.74681 3.13776 3.15172 3.29251 3.31731 3.66852 3.88062 4.02878 4.26326 4.54268 4.64081 4.75577 4.88978 5.15449 5.28537 5.28723 5.32129 5.39681 5.44882 5.59072 5.66128 5.68930 5.83212 5.88508 6.21559 6.34096 6.50590 6.52163 6.67214 7.00644 7.02855 7.10298 7.17667 7.34106 7.78670 7.93573 8.20181 8.36302 8.54149 8.82686 8.99515 9.38004 10.19976 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.004115 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.138665 B = 6802.774761 C = 7070.399492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.087 3.913 4 C 0.132 3.868 5 N -0.715 5.715 6 C 0.698 3.302 7 O -0.526 6.526 8 N -0.671 5.671 9 C 0.372 3.628 10 C -0.277 4.277 11 C 0.139 3.861 12 C -0.490 4.490 13 H 0.096 0.904 14 C 0.100 3.900 15 N -0.818 5.818 16 Si 0.887 3.113 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.256 1.256 20 C -0.253 4.253 21 C 0.119 3.881 22 N -0.534 5.534 23 C -0.167 4.167 24 C -0.168 4.168 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.395 0.605 31 H 0.405 0.595 32 H 0.113 0.887 33 H 0.281 0.719 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 2.441 -18.564 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.009 3.991 4 C 0.043 3.957 5 N -0.372 5.372 6 C 0.398 3.602 7 O -0.396 6.396 8 N -0.319 5.319 9 C 0.142 3.858 10 C -0.302 4.302 11 C 0.130 3.870 12 C -0.522 4.522 13 H 0.114 0.886 14 C -0.117 4.117 15 N -0.445 5.445 16 Si 0.711 3.289 17 H -0.188 1.188 18 H -0.207 1.207 19 H -0.180 1.180 20 C -0.276 4.276 21 C -0.034 4.034 22 N -0.252 5.252 23 C -0.205 4.205 24 C -0.207 4.207 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.229 0.771 31 H 0.240 0.760 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.148 0.852 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.778 3.415 -19.004 19.891 hybrid contribution 0.216 -1.621 0.304 1.663 sum -4.562 1.794 -18.700 19.332 Atomic orbital electron populations 1.22706 0.81207 1.02527 0.99892 1.87859 1.19398 1.27677 1.95442 1.22305 0.90092 0.85140 1.01546 1.20090 0.90295 0.99412 0.85921 1.44373 1.58173 1.31130 1.03499 1.15985 0.81270 0.83100 0.79844 1.90976 1.38758 1.27096 1.82784 1.42617 1.45894 1.39699 1.03722 1.17946 0.93671 0.92020 0.82114 1.21784 1.09999 1.06188 0.92274 1.17764 0.86788 0.90513 0.91894 1.19090 1.34802 0.91916 1.06347 0.88591 1.25751 0.95287 0.96815 0.93873 1.69709 1.31853 1.08432 1.34471 0.86603 0.83149 0.78758 0.80399 1.18820 1.20743 1.17951 1.22154 1.03576 1.03063 0.98763 1.21745 0.96930 0.97402 0.87354 1.67315 1.18233 1.15097 1.24593 1.23337 1.02666 1.00479 0.94031 1.23394 1.02287 0.92449 1.02547 0.93909 0.94393 0.89830 0.90318 0.92860 0.77054 0.75998 0.86910 0.90811 0.86817 0.85154 0.88149 0.87701 0.87987 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.35 10.69 -35.23 -0.38 -5.73 16 3 C 0.09 1.14 5.62 37.16 0.21 1.35 16 4 C 0.13 1.62 2.11 -131.81 -0.28 1.34 16 5 N -0.72 -9.79 5.47 -52.41 -0.29 -10.08 16 6 C 0.70 12.80 8.39 -86.92 -0.73 12.07 16 7 O -0.53 -11.57 12.98 5.29 0.07 -11.50 16 8 N -0.67 -12.40 5.40 -15.86 -0.09 -12.49 16 9 C 0.37 8.42 7.42 -154.68 -1.15 7.27 16 10 C -0.28 -6.51 7.85 -38.45 -0.30 -6.81 16 11 C 0.14 3.48 4.35 -106.55 -0.46 3.02 16 12 C -0.49 -13.09 9.45 -37.65 -0.36 -13.44 16 13 H 0.10 2.70 8.06 -52.49 -0.42 2.28 16 14 C 0.10 2.61 5.40 -17.34 -0.09 2.51 16 15 N -0.82 -21.78 13.92 55.55 0.77 -21.01 16 16 Si 0.89 20.54 26.66 -169.99 -4.53 16.01 16 17 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.25 -5.85 9.85 -39.07 -0.38 -6.23 16 21 C 0.12 2.65 11.10 -18.05 -0.20 2.45 16 22 N -0.53 -12.79 7.86 -12.76 -0.10 -12.89 16 23 C -0.17 -1.46 10.17 -26.69 -0.27 -1.73 16 24 C -0.17 -1.72 10.17 -26.70 -0.27 -1.99 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.27 6.59 -51.93 -0.34 0.93 16 29 H 0.05 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.40 4.28 8.86 -40.82 -0.36 3.92 16 31 H 0.41 5.94 8.72 -40.82 -0.36 5.58 16 32 H 0.11 2.53 7.87 -52.49 -0.41 2.12 16 33 H 0.28 6.83 8.29 -40.82 -0.34 6.50 16 34 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -32.85 336.79 -7.90 -40.75 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.26 Total: 10.58 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -3.18 Total: 1.29 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.30 Total: -56.47 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.31 Total: -17.23 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.53 Total: 16.01 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.85 -7.90 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.740 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds