Wall clock time and date at job start Tue Mar 31 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00160 * 2 1 4 4 C 1.53004 * 109.47264 * 180.02562 * 3 2 1 5 5 N 1.46499 * 115.55057 * 300.83369 * 4 3 2 6 6 C 1.34773 * 119.99797 * 300.15762 * 5 4 3 7 7 O 1.21583 * 120.00278 * 4.32033 * 6 5 4 8 8 N 1.34775 * 119.99851 * 184.32158 * 6 5 4 9 9 C 1.39459 * 120.00160 * 185.28351 * 8 6 5 10 10 C 1.38645 * 119.64981 * 174.67560 * 9 8 6 11 11 C 1.40823 * 118.67095 * 180.02562 * 10 9 8 12 12 C 1.41548 * 120.99396 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00113 * 127.12884 * 12 11 10 14 14 C 1.40032 * 119.99765 * 307.12502 * 12 11 10 15 15 N 1.30743 * 120.00032 * 157.27136 * 14 12 11 16 16 Si 1.86804 * 120.00170 * 337.27781 * 14 12 11 17 17 H 1.48498 * 109.47223 * 84.13203 * 16 14 12 18 18 H 1.48501 * 109.47140 * 204.13160 * 16 14 12 19 19 H 1.48498 * 109.46894 * 324.12914 * 16 14 12 20 20 C 1.41157 * 118.00819 * 359.97438 * 11 10 9 21 21 C 1.36589 * 119.12733 * 0.02562 * 20 11 10 22 22 N 1.32065 * 121.25969 * 0.02562 * 21 20 11 23 23 C 1.53003 * 117.49631 * 86.50547 * 4 3 2 24 24 C 1.53001 * 117.49601 * 155.15914 * 4 3 2 25 25 H 1.09002 * 109.46735 * 299.99283 * 1 2 3 26 26 H 1.08991 * 109.47078 * 59.99409 * 1 2 3 27 27 H 1.09003 * 109.46702 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46983 * 60.00592 * 3 2 1 29 29 H 1.09000 * 109.47257 * 300.00662 * 3 2 1 30 30 H 0.96997 * 119.99673 * 120.16098 * 5 4 3 31 31 H 0.97004 * 119.99879 * 5.27113 * 8 6 5 32 32 H 1.07998 * 120.66233 * 0.03812 * 10 9 8 33 33 H 0.96997 * 120.00226 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.43575 * 180.02562 * 20 11 10 35 35 H 1.08004 * 119.37031 * 179.97438 * 21 20 11 36 36 H 1.09002 * 117.49752 * 215.00510 * 23 4 3 37 37 H 1.08999 * 117.49806 * 0.02562 * 23 4 3 38 38 H 1.08998 * 117.50197 * 359.97438 * 24 4 3 39 39 H 1.09005 * 117.49809 * 144.97394 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1124 0.4592 1.1339 6 6 3.9088 0.9018 2.3905 7 8 3.1825 1.8565 2.5886 8 7 4.5104 0.2861 3.4275 9 6 4.2149 0.6724 4.7346 10 6 4.7519 -0.0374 5.7976 11 6 4.4395 0.3702 7.1088 12 6 4.9602 -0.3192 8.2300 13 1 5.4820 0.2245 9.0037 14 6 4.7988 -1.7061 8.3361 15 7 5.6143 -2.4040 9.0827 16 14 3.4185 -2.5593 7.4106 17 1 3.8554 -2.8412 6.0197 18 1 3.0806 -3.8350 8.0915 19 1 2.2222 -1.6799 7.3851 20 6 3.5915 1.4869 7.2715 21 6 3.1102 2.1234 6.1629 22 7 3.4231 1.7132 4.9472 23 6 4.2326 1.0466 -1.3556 24 6 4.3367 2.3567 -0.5709 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 4.6408 -0.3396 0.9806 31 1 5.1489 -0.4258 3.2648 32 1 5.3971 -0.8858 5.6235 33 1 5.5027 -3.3647 9.1559 34 1 3.3267 1.8335 8.2595 35 1 2.4607 2.9780 6.2829 36 1 5.1204 0.4160 -1.4029 37 1 3.6047 1.0423 -2.2465 38 1 3.7772 3.2137 -0.9460 39 1 5.2929 2.5884 -0.1016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871726740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:46 Heat of formation + Delta-G solvation = -20.217586 kcal Electronic energy + Delta-G solvation = -22989.022262 eV Core-core repulsion = 19511.449258 eV Total energy + Delta-G solvation = -3477.573004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.64678 -40.37496 -39.05505 -37.67061 -35.97222 -35.46327 -33.77166 -33.06096 -30.47260 -29.07956 -27.88236 -26.49345 -24.24327 -23.99240 -23.38007 -21.98051 -20.92019 -19.73136 -19.41107 -18.10637 -17.53162 -17.06452 -16.87823 -16.78410 -16.30674 -16.23924 -16.06635 -15.75387 -15.29437 -14.94962 -14.84719 -14.69450 -14.39278 -13.48114 -13.38027 -13.23903 -13.00313 -12.61305 -12.55680 -12.50434 -12.40594 -12.00196 -11.91740 -11.57587 -11.45409 -11.14604 -11.05497 -10.53370 -10.00995 -9.94914 -9.74839 -9.00176 -8.81783 -6.61822 0.56892 0.72395 1.26979 1.33253 1.42299 1.47302 2.13415 2.20493 2.50188 2.69958 3.00691 3.03246 3.42545 3.75910 3.91220 3.94705 4.08216 4.31604 4.43006 4.44470 4.48725 4.58498 4.62432 4.70123 4.74199 4.75833 4.78446 4.82996 4.98597 5.17230 5.19268 5.31091 5.52190 5.60275 5.76035 5.91618 6.14429 6.18129 6.33541 6.58222 6.82059 6.90993 7.49724 7.73005 8.28055 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.004115 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.138665 B = 6802.774761 C = 7070.399492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.089 3.911 4 C 0.092 3.908 5 N -0.696 5.696 6 C 0.694 3.306 7 O -0.565 6.565 8 N -0.664 5.664 9 C 0.372 3.628 10 C -0.280 4.280 11 C 0.124 3.876 12 C -0.517 4.517 13 H 0.066 0.934 14 C 0.071 3.929 15 N -0.852 5.852 16 Si 0.934 3.066 17 H -0.252 1.252 18 H -0.263 1.263 19 H -0.272 1.272 20 C -0.261 4.261 21 C 0.120 3.880 22 N -0.551 5.551 23 C -0.131 4.131 24 C -0.169 4.169 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.410 0.590 31 H 0.422 0.578 32 H 0.120 0.880 33 H 0.291 0.709 34 H 0.126 0.874 35 H 0.162 0.838 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 1.951 -21.625 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C 0.012 3.988 4 C 0.004 3.996 5 N -0.353 5.353 6 C 0.394 3.606 7 O -0.439 6.439 8 N -0.314 5.314 9 C 0.141 3.859 10 C -0.305 4.305 11 C 0.115 3.885 12 C -0.549 4.549 13 H 0.084 0.916 14 C -0.143 4.143 15 N -0.480 5.480 16 Si 0.756 3.244 17 H -0.176 1.176 18 H -0.188 1.188 19 H -0.196 1.196 20 C -0.283 4.283 21 C -0.033 4.033 22 N -0.269 5.269 23 C -0.169 4.169 24 C -0.208 4.208 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.247 0.753 31 H 0.260 0.740 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.179 0.821 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.248 2.880 -22.118 22.913 hybrid contribution 0.353 -1.346 1.146 1.803 sum -4.896 1.533 -20.972 21.590 Atomic orbital electron populations 1.22861 0.80022 1.03563 1.00348 1.87819 1.20850 1.28213 1.95523 1.22262 0.90802 0.84796 1.00970 1.20435 0.90202 1.01827 0.87143 1.44202 1.57420 1.31369 1.02296 1.16181 0.80832 0.82685 0.80890 1.90952 1.40385 1.28913 1.83627 1.42532 1.46210 1.40122 1.02530 1.18106 0.92832 0.91330 0.83640 1.21819 1.10166 1.06469 0.92061 1.17885 0.87265 0.91252 0.92062 1.19057 1.36492 0.92625 1.06726 0.91600 1.26289 0.96550 0.96939 0.94509 1.69724 1.33147 1.09260 1.35903 0.85887 0.80047 0.78273 0.80192 1.17617 1.18782 1.19644 1.22333 1.03488 1.02656 0.99852 1.22229 0.96566 0.97848 0.86638 1.67464 1.18584 1.15583 1.25276 1.23476 1.02413 0.98668 0.92322 1.23458 1.01542 0.93233 1.02562 0.95392 0.91983 0.88569 0.94235 0.90060 0.75283 0.73967 0.86201 0.89849 0.85597 0.82057 0.86474 0.85643 0.86918 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -10.58 10.69 -148.98 -1.59 -12.17 16 3 C 0.09 2.20 5.62 71.98 0.40 2.61 16 4 C 0.09 2.05 2.11 3.61 0.01 2.05 16 5 N -0.70 -17.73 5.47 -438.01 -2.39 -20.12 16 6 C 0.69 24.71 8.39 179.06 1.50 26.22 16 7 O -0.57 -24.74 12.98 -3.98 -0.05 -24.80 16 8 N -0.66 -23.69 5.40 -322.37 -1.74 -25.43 16 9 C 0.37 16.53 7.42 132.76 0.98 17.52 16 10 C -0.28 -13.03 7.85 23.00 0.18 -12.85 16 11 C 0.12 6.25 4.35 -21.11 -0.09 6.16 16 12 C -0.52 -28.38 9.45 23.52 0.22 -28.15 16 13 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 14 C 0.07 3.76 5.40 85.29 0.46 4.22 16 15 N -0.85 -45.96 13.92 21.84 0.30 -45.65 16 16 Si 0.93 41.88 26.66 68.60 1.83 43.71 16 17 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 C -0.26 -12.03 9.85 22.60 0.22 -11.81 16 21 C 0.12 5.27 11.10 84.27 0.94 6.20 16 22 N -0.55 -25.96 7.86 -194.27 -1.53 -27.49 16 23 C -0.13 -1.76 10.17 30.62 0.31 -1.45 16 24 C -0.17 -3.02 10.17 30.62 0.31 -2.71 16 25 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.28 6.59 -2.39 -0.02 1.27 16 29 H 0.08 1.48 8.11 -2.39 -0.02 1.46 16 30 H 0.41 7.80 8.86 -92.71 -0.82 6.98 16 31 H 0.42 11.62 8.72 -92.71 -0.81 10.81 16 32 H 0.12 5.31 7.87 -2.91 -0.02 5.29 16 33 H 0.29 14.15 8.29 -92.71 -0.77 13.38 16 34 H 0.13 5.37 8.06 -2.91 -0.02 5.35 16 35 H 0.16 5.92 8.06 -2.91 -0.02 5.89 16 36 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -72.03 336.79 0.99 -71.05 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -0.54 Total: 31.07 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.70 Total: 9.84 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -5.36 Total: -118.70 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -1.64 Total: -36.96 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.83 Total: 43.71 kcal Total: -72.03 0.99 -71.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.832 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds