Wall clock time and date at job start Tue Mar 31 2020 07:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.93707 * 2 1 4 4 C 1.53530 * 109.88888 * 121.06465 * 2 1 3 5 5 C 1.51888 * 108.96339 * 192.03734 * 4 2 1 6 6 H 1.09000 * 108.66460 * 60.49176 * 5 4 2 7 7 N 1.46897 * 108.66518 * 178.38953 * 5 4 2 8 8 C 1.46907 * 110.99756 * 273.80722 * 7 5 4 9 9 C 1.52996 * 109.46978 * 185.19349 * 8 7 5 10 10 C 1.50705 * 109.47053 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99799 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00082 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00252 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00116 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46958 * 90.00016 * 14 12 10 16 16 H 1.48493 * 109.47387 * 210.00344 * 14 12 10 17 17 H 1.48501 * 109.47196 * 330.00608 * 14 12 10 18 18 C 1.50047 * 113.55445 * 299.43919 * 5 4 2 19 19 C 1.39327 * 116.42929 * 203.07364 * 18 5 4 20 20 C 1.37762 * 121.05305 * 180.70646 * 19 18 5 21 21 C 1.38342 * 120.01426 * 0.10046 * 20 19 18 22 22 C 1.37743 * 119.51292 * 359.64160 * 21 20 19 23 23 C 1.38175 * 124.75205 * 23.21634 * 18 5 4 24 24 S 1.76460 * 122.30026 * 358.14274 * 23 18 5 25 25 H 1.09003 * 109.46876 * 298.93053 * 1 2 3 26 26 H 1.08998 * 109.47422 * 58.93201 * 1 2 3 27 27 H 1.08995 * 109.47104 * 178.93690 * 1 2 3 28 28 H 1.08999 * 109.46989 * 181.07096 * 3 2 1 29 29 H 1.09005 * 109.46738 * 301.06777 * 3 2 1 30 30 H 1.08999 * 109.46754 * 61.06795 * 3 2 1 31 31 H 1.08995 * 109.55766 * 311.88407 * 4 2 1 32 32 H 1.08999 * 109.54980 * 72.19311 * 4 2 1 33 33 H 1.00900 * 110.99946 * 37.76040 * 7 5 4 34 34 H 1.08996 * 109.46745 * 305.19781 * 8 7 5 35 35 H 1.09003 * 109.46756 * 65.18993 * 8 7 5 36 36 H 1.09001 * 109.47047 * 299.99728 * 9 8 7 37 37 H 1.09001 * 109.47160 * 60.00216 * 9 8 7 38 38 H 0.97000 * 120.00158 * 179.97438 * 13 12 10 39 39 H 1.08001 * 119.47298 * 0.67677 * 19 18 5 40 40 H 1.08008 * 119.99444 * 180.08238 * 20 19 18 41 41 H 1.07998 * 120.24232 * 179.65751 * 21 20 19 42 42 H 1.07996 * 119.68859 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0517 1.4384 0.0000 4 6 2.0523 -0.7450 1.2367 5 6 3.5413 -0.4812 1.3794 6 1 3.6953 0.5906 1.5036 7 7 4.0263 -1.1650 2.5857 8 6 3.8469 -0.3232 3.7762 9 6 4.4785 -1.0117 4.9876 10 6 4.2939 -0.1484 6.2090 11 1 3.7781 0.7971 6.1290 12 6 4.7836 -0.5655 7.4284 13 7 5.4123 -1.7165 7.5258 14 14 4.5554 0.5050 8.9422 15 1 3.2792 0.1487 9.6126 16 1 5.6856 0.2840 9.8797 17 1 4.5199 1.9334 8.5376 18 6 4.3485 -0.9496 0.2045 19 6 5.6973 -1.2060 0.4415 20 6 6.5296 -1.6264 -0.5726 21 6 6.0303 -1.7983 -1.8512 22 6 4.6974 -1.5534 -2.0978 23 6 3.8492 -1.1356 -1.0703 24 16 2.1477 -0.8813 -1.4629 25 1 -0.3633 0.4972 0.8995 26 1 -0.3634 0.5303 -0.8802 27 1 -0.3633 -1.0274 -0.0191 28 1 3.1415 1.4295 -0.0192 29 1 1.6770 1.9607 -0.8803 30 1 1.7082 1.9494 0.8994 31 1 1.5316 -0.3874 2.1249 32 1 1.8810 -1.8148 1.1174 33 1 3.5716 -2.0582 2.7026 34 1 4.3278 0.6415 3.6147 35 1 2.7826 -0.1726 3.9576 36 1 3.9975 -1.9764 5.1490 37 1 5.5427 -1.1622 4.8061 38 1 5.7571 -2.0098 8.3837 39 1 6.0969 -1.0726 1.4360 40 1 7.5724 -1.8215 -0.3694 41 1 6.6807 -2.1224 -2.6502 42 1 4.3047 -1.6863 -3.0950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872060777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:51 Heat of formation + Delta-G solvation = -3.512775 kcal Electronic energy + Delta-G solvation = -21050.817318 eV Core-core repulsion = 18120.261903 eV Total energy + Delta-G solvation = -2930.555415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79996 -38.61010 -36.63486 -35.01159 -32.99124 -31.86639 -30.77801 -28.80342 -28.42862 -26.30260 -24.67205 -23.48959 -22.54594 -22.23454 -21.00595 -18.53395 -18.23606 -17.14176 -16.97525 -16.50833 -16.44141 -16.06486 -15.57820 -15.18685 -14.84760 -14.70646 -14.47120 -14.16516 -13.97747 -13.84092 -13.53313 -13.27472 -13.18503 -12.96620 -12.85837 -12.74787 -12.47968 -12.24635 -12.12941 -12.01197 -11.87786 -11.63762 -11.41678 -11.28197 -10.90690 -10.58676 -10.55005 -9.68442 -9.31874 -8.34609 -8.20441 -6.31896 0.26866 0.45983 0.61934 1.38476 1.40263 1.41487 1.52496 2.39872 2.76077 3.13425 3.18255 3.51301 3.53471 3.78791 3.97193 4.10770 4.13449 4.17009 4.34360 4.43546 4.50878 4.58241 4.64421 4.66464 4.70509 4.76412 4.79321 4.83384 4.88787 4.98425 5.06230 5.13378 5.13869 5.22050 5.38231 5.43011 5.56782 5.65186 5.68304 5.78536 6.03934 6.11527 6.24340 6.44541 6.85614 7.37645 8.91632 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.004017 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.896835 B = 6968.863361 C = 8110.226149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.034 4.034 3 C -0.141 4.141 4 C -0.135 4.135 5 C 0.124 3.876 6 H 0.085 0.915 7 N -0.684 5.684 8 C 0.088 3.912 9 C 0.035 3.965 10 C -0.543 4.543 11 H 0.061 0.939 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.263 1.263 18 C -0.086 4.086 19 C -0.093 4.093 20 C -0.135 4.135 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.086 4.086 24 S -0.131 6.131 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.339 0.661 34 H 0.057 0.943 35 H 0.025 0.975 36 H -0.010 1.010 37 H -0.007 1.007 38 H 0.263 0.737 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 3.285 -20.617 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C -0.199 4.199 4 C -0.176 4.176 5 C 0.015 3.985 6 H 0.103 0.897 7 N -0.313 5.313 8 C -0.040 4.040 9 C -0.003 4.003 10 C -0.581 4.581 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.187 1.187 18 C -0.092 4.092 19 C -0.113 4.113 20 C -0.155 4.155 21 C -0.122 4.122 22 C -0.140 4.140 23 C -0.199 4.199 24 S 0.113 5.887 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.008 0.992 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.532 3.085 -21.552 22.730 hybrid contribution 0.076 0.344 2.391 2.417 sum -6.456 3.429 -19.161 20.508 Atomic orbital electron populations 1.21690 0.89269 1.03492 1.03957 1.23042 1.00358 0.97589 0.93510 1.22143 1.00841 0.93197 1.03745 1.22396 0.95921 1.01037 0.98222 1.20137 0.91242 0.98686 0.88471 0.89710 1.60557 1.62341 1.06444 1.01991 1.21810 0.97532 0.95762 0.88944 1.18881 0.94834 0.94703 0.91879 1.21601 1.36628 1.05658 0.94251 0.92085 1.25945 0.94664 0.96448 1.02531 1.70110 1.38855 1.22200 1.26014 0.85455 0.77851 0.79255 0.78531 1.19735 1.20859 1.18684 1.19588 0.95353 1.01935 0.92336 1.21412 0.93027 0.97210 0.99689 1.21398 1.00686 1.00159 0.93228 1.21342 0.94890 0.98609 0.97345 1.21097 0.93668 1.01127 0.98153 1.21505 0.97508 1.05219 0.95674 1.85222 1.02584 1.72181 1.28730 0.89721 0.90562 0.91483 0.93243 0.90243 0.90638 0.89720 0.90920 0.84236 0.92447 0.95693 0.99168 0.98830 0.92797 0.86264 0.84353 0.82761 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.55 71.98 0.62 -1.42 16 2 C -0.03 -0.71 0.90 -10.61 -0.01 -0.72 16 3 C -0.14 -2.78 7.72 71.98 0.56 -2.23 16 4 C -0.14 -3.34 4.06 30.41 0.12 -3.22 16 5 C 0.12 3.61 1.75 43.60 0.08 3.68 16 6 H 0.09 2.54 5.73 -2.39 -0.01 2.53 16 7 N -0.68 -23.87 4.83 -498.43 -2.41 -26.28 16 8 C 0.09 3.58 5.41 86.30 0.47 4.05 16 9 C 0.03 1.82 5.28 29.85 0.16 1.98 16 10 C -0.54 -30.63 9.11 25.60 0.23 -30.39 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.00 0.12 5.46 84.65 0.46 0.58 16 13 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 14 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 C -0.09 -2.48 5.18 -19.82 -0.10 -2.59 16 19 C -0.09 -2.78 9.12 22.42 0.20 -2.58 16 20 C -0.13 -3.30 10.03 22.18 0.22 -3.07 16 21 C -0.10 -2.15 10.06 22.18 0.22 -1.93 16 22 C -0.12 -2.70 9.65 22.49 0.22 -2.48 16 23 C -0.09 -2.27 5.90 22.59 0.13 -2.13 16 24 S -0.13 -3.01 20.77 -56.49 -1.17 -4.19 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.14 5.87 -2.39 -0.01 1.13 16 29 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 2.08 7.47 -2.39 -0.02 2.06 16 32 H 0.07 1.88 8.02 -2.39 -0.02 1.87 16 33 H 0.34 11.84 8.47 -89.69 -0.76 11.08 16 34 H 0.06 2.34 7.89 -2.39 -0.02 2.32 16 35 H 0.02 0.97 7.53 -2.39 -0.02 0.95 16 36 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.12 4.03 7.23 -2.91 -0.02 4.01 16 40 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 42 H 0.14 2.63 8.05 -2.91 -0.02 2.61 16 Total: -1.00 -63.81 343.35 2.55 -61.27 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.24 Total: 22.26 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.58 Total: -42.48 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.12 Total: -82.82 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -1.17 Total: -4.19 kcal Total: -63.81 2.55 -61.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872060777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.755 kcal (2) G-P(sol) polarization free energy of solvation -63.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds