Wall clock time and date at job start Tue Mar 31 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00047 * 2 1 4 4 N 1.46508 * 109.47440 * 125.00290 * 3 2 1 5 5 C 1.46493 * 119.99729 * 270.00317 * 4 3 2 6 6 C 1.50703 * 109.46865 * 269.99266 * 5 4 3 7 7 H 1.08000 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99763 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99955 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00431 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47230 * 89.99932 * 10 8 6 12 12 H 1.48500 * 109.47053 * 210.00087 * 10 8 6 13 13 H 1.48495 * 109.46938 * 329.99873 * 10 8 6 14 14 C 1.34774 * 119.99755 * 89.99245 * 4 3 2 15 15 O 1.21586 * 119.99545 * 180.02562 * 14 4 3 16 16 N 1.34770 * 120.00449 * 0.02562 * 14 4 3 17 17 C 1.39969 * 120.00084 * 184.63996 * 16 14 4 18 18 C 1.38922 * 120.45768 * 145.05134 * 17 16 14 19 19 N 1.31783 * 120.78462 * 179.97438 * 18 17 16 20 20 C 1.31845 * 121.85021 * 359.97438 * 19 18 17 21 21 C 1.38755 * 120.83251 * 0.02562 * 20 19 18 22 22 O 1.35910 * 120.43173 * 179.97438 * 21 20 19 23 23 C 1.42904 * 117.00310 * 0.02562 * 22 21 20 24 24 C 1.39013 * 119.13253 * 359.97438 * 21 20 19 25 25 H 1.08006 * 119.99509 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99931 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.99883 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47627 * 4.99785 * 3 2 1 29 29 H 1.09004 * 109.47507 * 244.99936 * 3 2 1 30 30 H 1.08999 * 109.47503 * 29.99496 * 5 4 3 31 31 H 1.09002 * 109.47399 * 149.99802 * 5 4 3 32 32 H 0.96997 * 119.99964 * 179.97438 * 9 8 6 33 33 H 0.96997 * 120.00072 * 4.63863 * 16 14 4 34 34 H 1.07999 * 119.60949 * 359.97438 * 18 17 16 35 35 H 1.07994 * 119.58322 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47423 * 180.02562 * 23 22 21 37 37 H 1.09004 * 109.46610 * 299.99602 * 23 22 21 38 38 H 1.08993 * 109.46977 * 59.99299 * 23 22 21 39 39 H 1.07995 * 120.83783 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5590 1.8649 2.4248 6 6 2.8445 3.3436 2.4804 7 1 3.3035 3.8370 1.6364 8 6 2.5196 4.0664 3.6086 9 7 2.7683 5.3570 3.6569 10 14 1.7262 3.2129 5.0686 11 1 2.7829 2.7226 5.9895 12 1 0.8499 4.1728 5.7869 13 1 0.9151 2.0648 4.5899 14 6 4.2497 0.8660 0.9823 15 8 5.0217 0.8879 1.9214 16 7 4.6499 0.3760 -0.2077 17 6 5.9206 -0.1965 -0.3372 18 6 6.1225 -1.2780 -1.1854 19 7 7.3163 -1.8216 -1.3127 20 6 8.3614 -1.3687 -0.6488 21 6 8.2413 -0.2918 0.2179 22 8 9.3240 0.1681 0.8987 23 6 10.5647 -0.5050 0.6754 24 6 6.9991 0.3104 0.3809 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 1.4889 1.6966 2.5459 31 1 3.0991 1.3603 3.2259 32 1 2.5394 5.8656 4.4505 33 1 4.0574 0.4200 -0.9743 34 1 5.2914 -1.6780 -1.7472 35 1 9.3231 -1.8418 -0.7812 36 1 11.3442 -0.0395 1.2785 37 1 10.4652 -1.5532 0.9573 38 1 10.8308 -0.4360 -0.3793 39 1 6.8742 1.1500 1.0486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880548991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:45 Heat of formation + Delta-G solvation = 12.360749 kcal Electronic energy + Delta-G solvation = -22942.945309 eV Core-core repulsion = 19466.785008 eV Total energy + Delta-G solvation = -3476.160302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90841 -39.71749 -38.07066 -36.07504 -34.81756 -33.19761 -32.27997 -31.43060 -29.75648 -28.08435 -27.45938 -25.70743 -23.90306 -23.13013 -21.85132 -20.22918 -19.52278 -18.57387 -17.61804 -16.98603 -16.85208 -16.58868 -16.14939 -15.89818 -15.09718 -14.95574 -14.47661 -14.21309 -13.89411 -13.83333 -13.29209 -13.14858 -12.88828 -12.55991 -12.38102 -12.00729 -11.96422 -11.69021 -11.60205 -11.32408 -10.99586 -10.69056 -10.55240 -10.18218 -9.88850 -9.60473 -9.36605 -9.29719 -8.69940 -8.60873 -8.21833 -7.79824 -6.10972 -4.10236 1.11836 1.37950 2.24789 2.86843 3.24101 3.28843 3.34508 3.36932 3.54237 3.92102 4.24572 4.37768 4.51755 4.69171 4.90437 4.99312 5.02662 5.05742 5.13575 5.21607 5.23324 5.30095 5.37826 5.44042 5.84425 5.97678 6.00809 6.10555 6.28681 6.48470 6.63601 6.75503 6.81242 6.84636 7.15590 7.22719 7.36297 7.57739 7.92622 8.30586 8.43789 8.91050 9.00730 9.48868 11.02285 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.004676 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.557204 B = 5985.962302 C = 7438.409778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.175 4.175 3 C 0.136 3.864 4 N -0.595 5.595 5 C 0.232 3.768 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.701 3.299 15 O -0.563 6.563 16 N -0.688 5.688 17 C 0.171 3.829 18 C 0.030 3.970 19 N -0.433 5.433 20 C -0.015 4.015 21 C 0.099 3.901 22 O -0.308 6.308 23 C 0.025 3.975 24 C -0.116 4.116 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.407 0.593 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -13.422 -11.108 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.012 3.988 4 N -0.329 5.329 5 C 0.111 3.889 6 C -0.570 4.570 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.402 3.598 15 O -0.438 6.438 16 N -0.338 5.338 17 C 0.071 3.929 18 C -0.132 4.132 19 N -0.141 5.141 20 C -0.174 4.174 21 C 0.050 3.950 22 O -0.219 6.219 23 C -0.070 4.070 24 C -0.144 4.144 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.245 0.755 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.895 -13.708 -10.621 18.315 hybrid contribution -0.723 0.272 0.912 1.195 sum 5.172 -13.436 -9.709 17.365 Atomic orbital electron populations 1.23865 0.95810 1.01960 0.99875 1.23453 0.96540 0.98924 1.00493 1.20588 0.93227 0.95885 0.89107 1.47222 1.08915 1.62965 1.13763 1.19634 0.94859 0.95033 0.79346 1.21330 1.41365 0.91108 1.03168 0.90692 1.24829 0.95233 0.94704 0.98076 1.69896 1.47653 1.06605 1.29291 0.86876 0.79890 0.79672 0.83416 1.19860 1.21042 1.19015 1.15899 0.83149 0.78532 0.82170 1.90917 1.52538 1.61029 1.39334 1.42863 1.15119 1.63336 1.12484 1.18320 0.84683 0.92787 0.97072 1.22394 0.95566 0.93588 1.01662 1.67432 0.98716 1.27559 1.20422 1.22707 0.98830 0.97381 0.98477 1.19923 0.88001 0.94244 0.92800 1.86139 1.16114 1.56323 1.63354 1.23099 0.83959 0.97846 1.02073 1.21181 0.88077 1.02542 1.02641 0.88109 0.88619 0.87597 0.88617 0.91109 0.94885 0.94365 0.92521 0.75501 0.82571 0.82753 0.88031 0.92498 0.92505 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 14.32 29.01 0.42 -1.59 16 2 C -0.17 -2.18 9.85 -36.03 -0.35 -2.53 16 3 C 0.14 1.99 5.65 -5.19 -0.03 1.96 16 4 N -0.60 -11.76 2.44 -182.18 -0.44 -12.21 16 5 C 0.23 5.53 4.23 -5.20 -0.02 5.51 16 6 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 7 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 10 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 14 C 0.70 14.09 8.14 -86.93 -0.71 13.39 16 15 O -0.56 -13.70 13.40 5.29 0.07 -13.63 16 16 N -0.69 -10.47 5.23 -14.14 -0.07 -10.54 16 17 C 0.17 2.62 6.32 -83.56 -0.53 2.09 16 18 C 0.03 0.39 11.12 -17.32 -0.19 0.20 16 19 N -0.43 -5.95 10.35 -12.96 -0.13 -6.08 16 20 C -0.02 -0.20 10.22 -17.35 -0.18 -0.38 16 21 C 0.10 1.47 6.71 -39.10 -0.26 1.20 16 22 O -0.31 -4.30 10.51 -19.46 -0.20 -4.50 16 23 C 0.03 0.22 9.82 101.05 0.99 1.21 16 24 C -0.12 -1.99 8.76 -38.96 -0.34 -2.33 16 25 H 0.10 1.12 7.84 -52.48 -0.41 0.70 16 26 H 0.10 0.93 8.06 -52.49 -0.42 0.50 16 27 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 28 H 0.10 1.47 7.72 -51.93 -0.40 1.07 16 29 H 0.07 0.83 6.30 -51.93 -0.33 0.51 16 30 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 31 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 33 H 0.41 4.74 6.52 -40.82 -0.27 4.48 16 34 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.16 1.51 6.31 -52.49 -0.33 1.18 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 38 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 39 H 0.16 3.32 6.31 -52.49 -0.33 2.98 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -34.89 333.65 -6.17 -41.06 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.87 Total: 5.29 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.65 Total: 5.49 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.12 Total: -55.42 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.13 Total: -18.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.89 -6.17 -41.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880548991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.422 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds