Wall clock time and date at job start Tue Mar 31 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00047 * 2 1 4 4 N 1.46508 * 109.47440 * 125.00290 * 3 2 1 5 5 C 1.46493 * 119.99729 * 270.00317 * 4 3 2 6 6 C 1.50703 * 109.46865 * 269.99266 * 5 4 3 7 7 H 1.08000 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99763 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99955 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00431 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47230 * 89.99932 * 10 8 6 12 12 H 1.48500 * 109.47053 * 210.00087 * 10 8 6 13 13 H 1.48495 * 109.46938 * 329.99873 * 10 8 6 14 14 C 1.34774 * 119.99755 * 89.99245 * 4 3 2 15 15 O 1.21586 * 119.99545 * 180.02562 * 14 4 3 16 16 N 1.34770 * 120.00449 * 0.02562 * 14 4 3 17 17 C 1.39969 * 120.00084 * 184.63996 * 16 14 4 18 18 C 1.38922 * 120.45768 * 145.05134 * 17 16 14 19 19 N 1.31783 * 120.78462 * 179.97438 * 18 17 16 20 20 C 1.31845 * 121.85021 * 359.97438 * 19 18 17 21 21 C 1.38755 * 120.83251 * 0.02562 * 20 19 18 22 22 O 1.35910 * 120.43173 * 179.97438 * 21 20 19 23 23 C 1.42904 * 117.00310 * 0.02562 * 22 21 20 24 24 C 1.39013 * 119.13253 * 359.97438 * 21 20 19 25 25 H 1.08006 * 119.99509 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99931 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.99883 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47627 * 4.99785 * 3 2 1 29 29 H 1.09004 * 109.47507 * 244.99936 * 3 2 1 30 30 H 1.08999 * 109.47503 * 29.99496 * 5 4 3 31 31 H 1.09002 * 109.47399 * 149.99802 * 5 4 3 32 32 H 0.96997 * 119.99964 * 179.97438 * 9 8 6 33 33 H 0.96997 * 120.00072 * 4.63863 * 16 14 4 34 34 H 1.07999 * 119.60949 * 359.97438 * 18 17 16 35 35 H 1.07994 * 119.58322 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47423 * 180.02562 * 23 22 21 37 37 H 1.09004 * 109.46610 * 299.99602 * 23 22 21 38 38 H 1.08993 * 109.46977 * 59.99299 * 23 22 21 39 39 H 1.07995 * 120.83783 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5590 1.8649 2.4248 6 6 2.8445 3.3436 2.4804 7 1 3.3035 3.8370 1.6364 8 6 2.5196 4.0664 3.6086 9 7 2.7683 5.3570 3.6569 10 14 1.7262 3.2129 5.0686 11 1 2.7829 2.7226 5.9895 12 1 0.8499 4.1728 5.7869 13 1 0.9151 2.0648 4.5899 14 6 4.2497 0.8660 0.9823 15 8 5.0217 0.8879 1.9214 16 7 4.6499 0.3760 -0.2077 17 6 5.9206 -0.1965 -0.3372 18 6 6.1225 -1.2780 -1.1854 19 7 7.3163 -1.8216 -1.3127 20 6 8.3614 -1.3687 -0.6488 21 6 8.2413 -0.2918 0.2179 22 8 9.3240 0.1681 0.8987 23 6 10.5647 -0.5050 0.6754 24 6 6.9991 0.3104 0.3809 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 1.4889 1.6966 2.5459 31 1 3.0991 1.3603 3.2259 32 1 2.5394 5.8656 4.4505 33 1 4.0574 0.4200 -0.9743 34 1 5.2914 -1.6780 -1.7472 35 1 9.3231 -1.8418 -0.7812 36 1 11.3442 -0.0395 1.2785 37 1 10.4652 -1.5532 0.9573 38 1 10.8308 -0.4360 -0.3793 39 1 6.8742 1.1500 1.0486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880548991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:45 Heat of formation + Delta-G solvation = -12.932103 kcal Electronic energy + Delta-G solvation = -22944.042090 eV Core-core repulsion = 19466.785008 eV Total energy + Delta-G solvation = -3477.257082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.13941 -41.03272 -39.14746 -37.47928 -36.22351 -34.95980 -33.84599 -32.62913 -31.08859 -29.72217 -28.28491 -27.01146 -25.28890 -24.53260 -23.29909 -21.45341 -20.77852 -19.77757 -19.12879 -18.85824 -18.01007 -17.77946 -17.38837 -16.83465 -16.53882 -16.44203 -15.91005 -15.58009 -15.18499 -15.12517 -14.63721 -14.43075 -14.29303 -14.08525 -13.59568 -13.52099 -13.21770 -12.93210 -12.76728 -12.53614 -12.42514 -12.30294 -11.98299 -11.92714 -11.74195 -11.35855 -10.82954 -10.58774 -10.34569 -9.96443 -9.55869 -9.17017 -8.33749 -6.38829 -0.00524 0.21520 1.20837 1.33781 1.37381 1.45385 1.66909 2.06168 2.24545 2.31008 2.76496 2.93198 3.01845 3.56459 3.65752 3.89044 3.99036 4.05109 4.16934 4.22933 4.34780 4.38039 4.40286 4.68792 4.74388 4.81069 4.84225 4.89514 4.97510 5.07224 5.13692 5.43305 5.45376 5.63783 5.72000 5.86028 5.90738 6.24357 6.25707 6.62574 6.84473 6.88735 7.22557 7.48842 8.83202 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.004676 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.557204 B = 5985.962302 C = 7438.409778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.186 4.186 3 C 0.130 3.870 4 N -0.601 5.601 5 C 0.244 3.756 6 C -0.536 4.536 7 H 0.029 0.971 8 C 0.014 3.986 9 N -0.945 5.945 10 Si 0.945 3.055 11 H -0.279 1.279 12 H -0.275 1.275 13 H -0.236 1.236 14 C 0.696 3.304 15 O -0.615 6.615 16 N -0.666 5.666 17 C 0.156 3.844 18 C 0.046 3.954 19 N -0.437 5.437 20 C -0.001 4.001 21 C 0.094 3.906 22 O -0.336 6.336 23 C 0.013 3.987 24 C -0.149 4.149 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.268 0.732 33 H 0.425 0.575 34 H 0.195 0.805 35 H 0.191 0.809 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -16.535 -12.392 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C 0.009 3.991 4 N -0.334 5.334 5 C 0.122 3.878 6 C -0.574 4.574 7 H 0.048 0.952 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.768 3.232 11 H -0.204 1.204 12 H -0.200 1.200 13 H -0.159 1.159 14 C 0.398 3.602 15 O -0.494 6.494 16 N -0.318 5.318 17 C 0.057 3.943 18 C -0.116 4.116 19 N -0.146 5.146 20 C -0.160 4.160 21 C 0.046 3.954 22 O -0.249 6.249 23 C -0.080 4.080 24 C -0.178 4.178 25 H 0.119 0.881 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.267 0.733 34 H 0.211 0.789 35 H 0.208 0.792 36 H 0.136 0.864 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.126 -16.852 -11.997 21.312 hybrid contribution -0.349 1.277 1.212 1.795 sum 4.777 -15.575 -10.785 19.538 Atomic orbital electron populations 1.24094 0.95426 1.03086 0.97412 1.23271 0.96828 0.97798 1.02623 1.20856 0.92768 0.97215 0.88307 1.47157 1.09778 1.62600 1.13873 1.19243 0.95498 0.91890 0.81217 1.21564 1.40558 0.93468 1.01852 0.95233 1.25801 0.95930 0.95311 1.01414 1.70050 1.49420 1.08520 1.30517 0.85761 0.79058 0.79465 0.78954 1.20443 1.19965 1.15887 1.16103 0.82778 0.78428 0.82907 1.90887 1.53941 1.63055 1.41527 1.42470 1.15476 1.62438 1.11416 1.18497 0.83895 0.93890 0.98004 1.22861 0.96454 0.91940 1.00310 1.67577 0.99003 1.27509 1.20471 1.23201 1.00077 0.96031 0.96679 1.19964 0.87555 0.94624 0.93304 1.86114 1.17503 1.57616 1.63630 1.23488 0.82028 0.98614 1.03913 1.21066 0.90514 1.02662 1.03531 0.88088 0.86381 0.86562 0.89637 0.88445 0.92826 0.96306 0.92285 0.73317 0.78873 0.79217 0.86384 0.90914 0.90488 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 14.32 67.78 0.97 -2.18 16 2 C -0.19 -4.16 9.85 25.64 0.25 -3.91 16 3 C 0.13 3.69 5.65 85.63 0.48 4.17 16 4 N -0.60 -24.02 2.44 -848.57 -2.07 -26.09 16 5 C 0.24 11.79 4.23 85.64 0.36 12.15 16 6 C -0.54 -31.38 9.94 25.60 0.25 -31.12 16 7 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 8 C 0.01 0.80 5.47 84.65 0.46 1.26 16 9 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 10 Si 0.94 44.41 27.47 68.60 1.88 46.29 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 14 C 0.70 28.82 8.14 179.06 1.46 30.28 16 15 O -0.61 -31.71 13.40 -3.99 -0.05 -31.77 16 16 N -0.67 -20.14 5.23 -316.93 -1.66 -21.79 16 17 C 0.16 4.74 6.32 38.22 0.24 4.98 16 18 C 0.05 1.08 11.12 84.86 0.94 2.02 16 19 N -0.44 -10.76 10.35 -194.92 -2.02 -12.77 16 20 C 0.00 -0.03 10.22 84.81 0.87 0.83 16 21 C 0.09 2.79 6.71 22.58 0.15 2.94 16 22 O -0.34 -9.47 10.51 -92.54 -0.97 -10.44 16 23 C 0.01 0.20 9.82 113.37 1.11 1.32 16 24 C -0.15 -5.36 8.76 22.67 0.20 -5.17 16 25 H 0.10 1.96 7.84 -2.91 -0.02 1.94 16 26 H 0.12 1.80 8.06 -2.91 -0.02 1.78 16 27 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 28 H 0.09 2.59 7.72 -2.39 -0.02 2.57 16 29 H 0.10 2.15 6.30 -2.38 -0.02 2.14 16 30 H 0.05 2.37 7.13 -2.39 -0.02 2.36 16 31 H 0.02 0.99 6.85 -2.39 -0.02 0.97 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.43 9.24 6.52 -92.71 -0.60 8.63 16 34 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.19 3.00 6.31 -2.91 -0.02 2.98 16 36 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 0.87 7.68 -2.39 -0.02 0.86 16 38 H 0.08 0.86 7.68 -2.39 -0.02 0.84 16 39 H 0.12 5.38 6.31 -2.91 -0.02 5.36 16 Total: -1.00 -81.50 333.65 3.59 -77.91 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.41 Total: 20.63 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 7.76 Total: 17.59 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -5.44 Total: -120.22 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.03 Total: -42.21 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -81.50 3.59 -77.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880548991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.983 kcal (2) G-P(sol) polarization free energy of solvation -81.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds