Wall clock time and date at job start Tue Mar 31 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00154 * 2 1 4 4 C 1.53000 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.73443 * 46.23828 * 4 3 2 6 6 C 1.53492 * 113.46948 * 177.06017 * 4 3 2 7 7 C 1.53234 * 83.43128 * 140.67788 * 6 4 3 8 8 N 1.47063 * 113.46921 * 275.49933 * 4 3 2 9 9 C 1.34780 * 136.05734 * 38.05732 * 8 4 3 10 10 O 1.21578 * 120.00106 * 0.02562 * 9 8 4 11 11 N 1.34773 * 120.00048 * 180.27831 * 9 8 4 12 12 C 1.39248 * 119.99956 * 174.58314 * 11 9 8 13 13 C 1.39687 * 119.57244 * 185.41773 * 12 11 9 14 14 C 1.38652 * 119.49229 * 179.77071 * 13 12 11 15 15 C 1.38352 * 118.67185 * 0.49511 * 14 13 12 16 16 C 1.40574 * 119.12803 * 359.74723 * 15 14 13 17 17 C 1.41338 * 119.78423 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99940 * 0.02646 * 17 16 15 19 19 C 1.40023 * 119.99667 * 180.02562 * 17 16 15 20 20 N 1.30740 * 120.00553 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47022 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47268 * 119.99849 * 21 19 17 24 24 H 1.48499 * 109.46955 * 239.99991 * 21 19 17 25 25 N 1.31900 * 119.57792 * 5.68861 * 12 11 9 26 26 H 1.09004 * 109.46850 * 299.99802 * 1 2 3 27 27 H 1.08999 * 109.47758 * 59.99435 * 1 2 3 28 28 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47024 * 60.00369 * 3 2 1 30 30 H 1.08999 * 109.47070 * 300.00745 * 3 2 1 31 31 H 1.08997 * 114.20752 * 254.43325 * 6 4 3 32 32 H 1.09003 * 114.20642 * 27.06723 * 6 4 3 33 33 H 1.08999 * 113.38580 * 219.29607 * 7 6 4 34 34 H 1.09000 * 113.47139 * 88.92651 * 7 6 4 35 35 H 0.97001 * 119.99997 * 354.58492 * 11 9 8 36 36 H 1.07995 * 120.25630 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.66278 * 180.22391 * 14 13 12 38 38 H 1.07998 * 120.43387 * 179.73195 * 15 14 13 39 39 H 0.97003 * 120.00556 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9002 0.4583 -0.7270 6 6 4.2558 2.5381 -0.0729 7 6 5.2177 1.8804 0.9223 8 7 4.1096 1.0093 1.3419 9 6 3.7677 0.3467 2.4646 10 8 2.7442 -0.3086 2.4959 11 7 4.5578 0.4148 3.5543 12 6 4.1502 -0.1754 4.7479 13 6 4.9204 -0.0032 5.9004 14 6 4.5104 -0.5876 7.0890 15 6 3.3476 -1.3373 7.0937 16 6 2.6192 -1.4776 5.8996 17 6 1.4296 -2.2408 5.8885 18 1 1.0829 -2.7135 6.7954 19 6 0.7008 -2.3840 4.7015 20 7 1.1203 -1.8113 3.6036 21 14 -0.8718 -3.3921 4.6868 22 1 -1.1272 -3.9307 6.0469 23 1 -2.0084 -2.5304 4.2737 24 1 -0.7296 -4.5172 3.7281 25 7 3.0446 -0.8942 4.7744 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 4.6969 2.7583 -1.0450 32 1 3.6859 3.3704 0.3402 33 1 5.5587 2.5569 1.7059 34 1 6.0359 1.3420 0.4440 35 1 5.4105 0.8749 3.5072 36 1 5.8265 0.5834 5.8667 37 1 5.0895 -0.4637 7.9922 38 1 3.0043 -1.8087 8.0027 39 1 0.6156 -1.9107 2.7812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881145934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:17 Heat of formation + Delta-G solvation = 39.112488 kcal Electronic energy + Delta-G solvation = -23983.544488 eV Core-core repulsion = 20508.544229 eV Total energy + Delta-G solvation = -3475.000259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.18235 -38.52159 -37.10707 -36.63842 -33.90012 -32.85771 -30.31318 -29.93741 -28.85987 -28.14764 -25.77381 -25.40184 -22.88446 -22.59890 -21.33803 -20.65289 -18.76217 -17.85308 -16.92430 -16.18781 -16.12549 -15.73434 -15.35608 -14.62381 -14.39849 -14.26021 -14.03299 -13.62107 -13.54994 -12.97765 -12.75762 -12.39892 -12.23211 -11.94800 -11.86687 -11.70841 -11.37295 -11.11138 -10.87292 -10.85472 -10.59158 -10.54411 -10.38627 -9.83329 -9.60551 -9.24619 -8.94143 -8.86942 -8.07218 -7.86580 -7.10694 -6.84190 -6.01239 -4.30413 2.90805 3.01210 3.20756 3.22084 3.25599 3.33361 3.98584 4.13618 4.31493 4.48049 4.53446 4.99157 5.08286 5.24608 5.33075 5.36018 5.43991 5.51155 5.59352 5.65508 5.73931 5.85522 6.05171 6.07743 6.13420 6.19695 6.30634 6.57258 6.81572 6.90906 6.93139 7.33033 7.56565 7.57800 7.72042 7.89407 7.93482 8.27033 8.39750 8.82093 8.89399 9.15210 9.75997 10.36661 10.59475 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.007328 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.229868 B = 3820.048742 C = 5866.912756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.364 6.364 3 C 0.063 3.937 4 C 0.161 3.839 5 H 0.090 0.910 6 C -0.148 4.148 7 C 0.096 3.904 8 N -0.668 5.668 9 C 0.688 3.312 10 O -0.435 6.435 11 N -0.671 5.671 12 C 0.389 3.611 13 C -0.360 4.360 14 C -0.035 4.035 15 C -0.309 4.309 16 C 0.271 3.729 17 C -0.425 4.425 18 H 0.081 0.919 19 C 0.055 3.945 20 N -0.641 5.641 21 Si 0.890 3.110 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.276 1.276 25 N -0.472 5.472 26 H 0.040 0.960 27 H 0.028 0.972 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.392 0.608 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 8.765 -10.186 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.282 6.282 3 C -0.014 4.014 4 C 0.057 3.943 5 H 0.107 0.893 6 C -0.186 4.186 7 C -0.029 4.029 8 N -0.415 5.415 9 C 0.389 3.611 10 O -0.296 6.296 11 N -0.320 5.320 12 C 0.149 3.851 13 C -0.386 4.386 14 C -0.059 4.059 15 C -0.332 4.332 16 C 0.146 3.854 17 C -0.456 4.456 18 H 0.099 0.901 19 C -0.175 4.175 20 N -0.259 5.259 21 Si 0.715 3.285 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.201 1.201 25 N -0.191 5.191 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.723 7.841 -10.955 13.744 hybrid contribution 0.258 0.183 0.743 0.808 sum 2.981 8.023 -10.211 13.324 Atomic orbital electron populations 1.22589 0.81704 1.02416 0.98837 1.88025 1.18969 1.26154 1.95060 1.22643 0.92919 0.86202 0.99676 1.22346 0.92636 0.95161 0.84204 0.89256 1.23413 0.98363 0.96584 1.00202 1.22692 0.91833 0.91867 0.96473 1.49219 1.26536 1.54325 1.11392 1.15880 0.85238 0.81064 0.78935 1.91435 1.21746 1.37480 1.78951 1.42540 1.21850 1.58380 1.09201 1.18345 0.92313 0.91660 0.82754 1.20418 1.05619 1.18632 0.93963 1.20525 0.95132 0.94915 0.95376 1.21605 1.00696 1.11512 0.99360 1.18388 0.91912 0.89360 0.85705 1.19588 1.04332 1.25802 0.95878 0.90062 1.26189 0.98818 0.96427 0.96027 1.70328 1.31735 1.25123 0.98704 0.86550 0.82477 0.80219 0.79284 1.18663 1.20208 1.20127 1.68694 1.11576 1.11809 1.26975 0.94138 0.95390 0.90045 0.92878 0.93418 0.89509 0.88880 0.91103 0.90677 0.77526 0.89307 0.88730 0.88687 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.01 101.05 1.11 1.76 16 2 O -0.36 -6.73 9.83 -43.65 -0.43 -7.16 16 3 C 0.06 0.95 5.38 37.16 0.20 1.15 16 4 C 0.16 2.20 4.33 -72.41 -0.31 1.88 16 5 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 6 C -0.15 -1.35 8.02 -26.36 -0.21 -1.56 16 7 C 0.10 1.03 8.28 -8.65 -0.07 0.96 16 8 N -0.67 -11.08 3.57 -183.40 -0.65 -11.73 16 9 C 0.69 15.32 8.65 -86.92 -0.75 14.57 16 10 O -0.43 -11.66 11.53 -3.12 -0.04 -11.70 16 11 N -0.67 -14.43 5.39 -15.79 -0.09 -14.51 16 12 C 0.39 9.99 7.43 -155.00 -1.15 8.84 16 13 C -0.36 -8.45 9.96 -38.89 -0.39 -8.84 16 14 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 15 C -0.31 -8.04 9.83 -38.66 -0.38 -8.42 16 16 C 0.27 7.88 6.55 -85.00 -0.56 7.32 16 17 C -0.43 -12.07 9.14 -37.73 -0.34 -12.41 16 18 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 19 C 0.06 1.50 5.50 -17.35 -0.10 1.41 16 20 N -0.64 -18.35 8.99 55.55 0.50 -17.85 16 21 Si 0.89 19.82 29.56 -169.99 -5.02 14.79 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 N -0.47 -13.79 5.74 -10.26 -0.06 -13.85 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 6.76 8.42 -40.82 -0.34 6.41 16 36 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 39 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -35.31 330.27 -9.55 -44.86 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.38 Total: 6.73 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -3.35 Total: 5.43 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.30 Total: -57.94 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.47 Total: -18.85 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.31 -9.55 -44.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.974 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds